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jalview.git
2020-06-02
gmungoc
JAL-3446 latest jmol zip from JAL-3253-applet (commit...
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2020-06-02
gmungoc
JAL-3446 fix broken test
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2020-06-02
BobHanson
Bob's gitignore addition
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2020-06-02
BobHanson
JAL-3626 from JAL-3253-applet Jalview.java
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2020-06-02
BobHanson
JAL-3626 from JAL-3253-applet Cache applicationProperti...
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2020-06-02
BobHanson
JAL-3626 from JAL-3253-applet Cache applicationProperti...
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2020-06-02
BobHanson
JAL-3626 from JAL-3253-applet web page embedding
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2020-06-01
BobHanson
JAL-3626 from JAL-3253-applet JalviewLite scrollTo...
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2020-06-01
BobHanson
JAL-3626 from JAL-3253-applet CalculationChooser
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2020-06-01
BobHanson
JAL-3626 from JAL-3253-applet StructureViewer/Chooser
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2020-06-01
BobHanson
JAL-3262 from JAL-3253-applet temp. Desktop instance...
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2020-06-01
BobHanson
JAL-3262 from JAL-3253-applet JalviewApp integration
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2020-06-01
BobHanson
JAL-3262 from JAL-3253-applet JalviewApp integration
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2020-06-01
BobHanson
JAL-3262 from JAL-3253-applet AppletParams + Cache...
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2020-06-01
BobHanson
JAL-3262 from JAL-3253-applet ArgsParser
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2020-06-01
BobHanson
JAL-3262 from JAL-3253-applet Platform JS interface...
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2020-06-01
BobHanson
JAL-3262 from JAL-3253-applet Preferences final static...
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2020-06-01
BobHanson
JAL-3262 from JAL-3523-applet JalviewApp and JalviewJSApi
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2020-06-01
BobHanson
JAL-3262 from JAL3253-applet core_jvjmol.z.js static...
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2020-06-01
BobHanson
JAL-3626 Regex optimization from JAL-3253-applet; also...
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2020-06-01
BobHanson
THIRDPARTYLIBS referred to intervalstore-v1.0 still
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2020-06-01
BobHanson
corrects Platform.openURL
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2020-06-01
BobHanson
JAL-3626 adding compatible Platform.java
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2020-06-01
BobHanson
SwingJS update
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2020-06-01
BobHanson
Merge branch 'Jalview-JS/develop' of https://source...
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2020-06-01
BobHanson
swingjs/api, javajs/async
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2020-06-01
soares
JAL-3225 small fixes for building within Eclipse
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2020-05-28
soares
Merge branch 'Jalview-JS/develop' of https://source...
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2020-05-28
BobHanson
JAL-3626 transpiler and SwingJS upgrade
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2020-05-28
BobHanson
Varna fix for hashtable.remove(value) [unclear]
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2020-05-28
BobHanson
JAL-3636 ColorUtils cleaner test for hex color
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2020-05-28
soares
Merge branch 'develop' into Jalview-JS/develop
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2020-05-28
BobHanson
Gitter comment 2020.05.28 Cache.log.err(msg) not appearing
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2020-05-28
gmungoc
JAL-3463 avoid Thread.sleep() as not supported in SwingJS
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2020-05-28
gmungoc
JAL-3624 use temp file for SIFT download in JS, correct...
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2020-05-28
gmungoc
JAL-3624 log when SIFTS mapping fails
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2020-05-27
Ben Soares
JAL-3541 ensure deletion of cloverReportDir
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2020-05-27
Ben Soares
JAL-3541 small fix for clover.xml location expected...
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2020-05-26
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2020-05-26
gmungoc
JAL-1889 disable test failing on build server
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2020-05-26
soares
Merge branch 'bug/JAL-3541_cloverReport_gradle_task_fai...
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2020-05-26
soares
JAL-3541 added a property/variable style comment to...
bug/JAL-3541_cloverReport_gradle_task_fails
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2020-05-26
gmungoc
JAL-3624 log when SIFTS mapping fails
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2020-05-26
gmungoc
Merge branch 'feature/JAL-3624siftsInJS' into develop
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2020-05-25
soares
JAL-3541 selectively merged build.gradle and gradle...
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2020-05-25
Jim Procter
JAL-3626 rescue automatic configuration of JALVIEW_VERS...
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2020-05-19
gmungoc
JAL-3621 corrected sequence feature sort and test
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2020-05-19
gmungoc
JAL-3624 use temp file for SIFT download in JS, correct...
feature/JAL-3624siftsInJS
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2020-05-18
gmungoc
JAL-3463 avoid Thread.sleep() as not supported in SwingJS
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2020-05-18
gmungoc
JAL-3621 update to intervalstore v1.1
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2020-05-18
gmungoc
JAL-3529 test updated for revised signature of getDBRefs()
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2020-05-18
gmungoc
Merge branch 'Jalview-JS/develop' into develop
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2020-05-18
gmungoc
JAL-3613 remove debug code committed in error
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2020-05-15
Ben Soares
JAL-3541 Fixed report path for build artifacts
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2020-05-14
Ben Soares
JAL-3541 Added mem setting and jvmArgs for cloverReporting
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2020-05-14
Ben Soares
JAL-3541 Individual tests now instrumented and reported...
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2020-05-12
Ben Soares
JAL-3541 Helpers for running tests, and other commands...
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2020-05-12
Ben Soares
JAL-3541 JavaExec tasks for cloverInstr and cloverRepor...
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2020-05-01
gmungoc
JAL-3613 check sequence overlap when matching search...
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2020-04-22
soares
JAL-3225 save auto formatting settings in org.eclipse...
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2020-04-21
Jim Procter
Merge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21
Jim Procter
JAL-3407 add GPL license to Jalview source files
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2020-04-21
Jim Procter
JAL-3407 release notes - JAL-247 - for auto-set-ID...
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2020-04-21
Jim Procter
Merge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21
Jim Procter
JAL-3407 fix JAL-3574 - remove from known issues for...
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2020-04-21
Jim Procter
Merge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21
Jim Procter
JAL-3574 JAL-3407 release notes
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2020-04-21
Jim Procter
Merge branch 'bug/JAL-3574filterByPOS' into documentati...
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2020-04-21
Jim Procter
Merge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21
Jim Procter
JAL-3407 add and document ComputePeptideVariants.groovy
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2020-04-21
Ben Soares
JAL-3577 changed default RELEASE dir in build.gradle...
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2020-04-21
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
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2020-04-21
Jim Procter
JAL-3567 JAL-3407 document sequence features report...
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2020-04-21
gmungoc
JAL-3210 try adding setup method to unit test failing...
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2020-04-21
gmungoc
JAL-1889 corrected wait for consensus to be calculated
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2020-04-21
Ben Soares
JAL-3577 Added newer install dirs to the deletion list...
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2020-04-21
Jim Procter
Merge branch 'bug/JAL-3567virtualFeatureCoordinates...
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2020-04-21
Jim Procter
JAL-367 code tidy
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2020-04-21
Jim Procter
JAL-3567 translated rather than imputed peptide
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2020-04-21
gmungoc
JAL-3603 load annotation file from RELATIVE_URL in...
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2020-04-21
Ben Soares
JAL-3602 Added configuration for enforced use of UTF...
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2020-04-17
gmungoc
JAL-3567 unit tests for linked feature tooltips
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2020-04-17
BobHanson
added .gitignore paths
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2020-04-16
BobHanson
JAL-3587 Load Project bug
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2020-04-16
gmungoc
JAL-3567 adjust layout of linked feature report, unit...
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2020-04-16
gmungoc
JAL-3567 added 'imputed by Jalview' to protein conseque...
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2020-04-16
gmungoc
JAL-3567 report mapped location for virtual features...
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2020-04-14
Jim Procter
JAL-3407 JAL-3529 release notes
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2020-04-14
Jim Procter
Merge branch 'bug/JAL-3529_uniprotidsinstockholm' into...
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2020-04-14
Jim Procter
JAL-3529 revert ordering of DBRef addition so it reflec...
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2020-04-14
Jim Procter
JAL-3597 improved Memory test suite by detecting base...
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2020-04-14
Jim Procter
JAL-3407 release date set to 16th April, known issue...
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2020-04-14
Jim Procter
Merge branch 'testing/JAL-3577_jalviewversion_autoset_f...
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2020-04-14
gmungoc
JAL-3583 remove debug logging, Javadoc added
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2020-04-13
gmungoc
JAL-3574 test coverage corners
bug/JAL-3574filterByPOS
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2020-04-13
gmungoc
JAL-3574 Matcher with integer/long value pattern (e...
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2020-04-12
gmungoc
JAL-3596 change redacted
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2020-04-12
gmungoc
JAL-3596 don't draw text over features if Show Text...
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2020-04-12
gmungoc
JAL-3583 consistent last[Formatted]Tooltip, show once...
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2020-04-09
BobHanson
JAL-3587 save and reload project file fix
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