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jalview.git
2017-06-08
kiramt
Merge branch 'bug/JAL-2589gapColour' into feature/2588
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2017-06-06
gmungoc
JAL-2589 correct colour for Gap in Score and User Defin...
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2017-06-05
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-06-05
Jim Procter
JAL-2590 release notes
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2017-06-05
Jim Procter
Merge branch 'bug/JAL-2590' into develop
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2017-06-05
Jim Procter
JAL-2590 patch for rendering eggnog trees with polytomi...
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2017-06-05
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-06-05
Jim Procter
JAL-2576 release notes
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2017-06-05
kiramt
JAL-2588 Naive implementation of gaps as grey in overview
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2017-06-05
Jim Procter
Merge branch 'bug/JAL-2576' into develop
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2017-06-05
Jim Procter
Merge branch 'bug/JAL-2586' into develop
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2017-06-05
kiramt
JAL-2586 Checkstyle flagged fix of unintended fall...
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2017-06-05
kiramt
JAL-2571 Missed (alwaysRun=true) for @BeforeMethod
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2017-06-04
Jim Procter
JAL-2228 java 1.7 compliance
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2017-06-04
Jim Procter
JAL-2291 updated docs
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2017-06-04
Jim Procter
JAL-2291 only hide/show columns intersecting with curre...
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2017-06-04
Jim Procter
JAL-2291 get bitset representing hidden columns
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2017-06-04
Jim Procter
JAL-2291 use HiddenColumns.hideMarkedBits and take...
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2017-06-04
Jim Procter
JAL-2291 method taking a BitSet for hiding columns
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2017-06-04
Jim Procter
JAL-2291 bug fix - BitSet.set is [start,end+1)
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2017-06-04
Jim Procter
JAL-2291 fixed broken asserts for SequenceI.getInsertio...
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2017-06-04
Jim Procter
JAL-2291 ‘Hide Insertions’ now operates on selection...
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2017-06-04
Jim Procter
JAL-2291 SequenceI.getInsertionsAsBits for convenient...
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2017-06-04
Jim Procter
JAL-2582 comment about IDs being lost if they resembl...
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2017-06-04
Jim Procter
JAL-2582 recognise ENS…P peptide IDs and make two getPa...
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2017-06-02
Jim Procter
Merge branch 'bug/JAL-2578' into develop
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2017-06-02
Jim Procter
Merge branch 'bug/JAL-2577' into develop
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2017-06-02
Jim Procter
Merge branch 'features/JAL-2228_featureSetCounts_minRan...
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2017-06-02
tcofoegbu
JAL-2473 revised default minimum dimension for Alignmen...
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2017-06-02
Jim Procter
JAL-2228 always create zero score annotations, since...
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2017-06-02
Jim Procter
JAL-2228 always set minimum for count to zero for annot...
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2017-06-02
kiramt
JAL-2576 Proposed fix
bug/JAL-2576
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2017-06-02
kiramt
JAL-2577 Don't allow viewport ranges below 0. Unit...
bug/JAL-2577
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2017-06-02
kiramt
JAL-2578 Moved hidden columns reveal to before selectio...
bug/JAL-2578
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2017-06-01
Jim Procter
Merge branch 'features/JAL-1648_cache_user_inputs'...
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2017-05-31
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-05-31
Jim Procter
JAL-2418 release notes for JAL-2547, JAL-2563, JAL...
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2017-05-31
Jim Procter
Merge branch 'JAL-2571' into develop
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2017-05-31
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-05-31
Jim Procter
JAL-2398 - updated groovy script for direct field modif...
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2017-05-31
Jim Procter
JAL-2418 JAL-2563 release notes
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2017-05-31
Jim Procter
JAL-2418 typo
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2017-05-31
Jim Procter
Merge branch 'develop' into documentation/JAL-2418_rele...
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2017-05-31
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2017-05-31
tcofoegbu
JAL-2375 fix unit test to reflect improvement
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2017-05-31
tcofoegbu
Fixed failing tests
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2017-05-31
tcofoegbu
JAL-2533 updated unit test to reflect improvement
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2017-05-31
gmungoc
JAL-2547 handle contact features 'around' a gap correctly
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2017-05-30
kiramt
JAL-2573 Fixes for alignment < viewport width, and...
JAL-2571
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2017-05-30
gmungoc
JAL-2547 tooltip/AmendFeatures on gap straddled by...
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2017-05-30
kiramt
JAL-2571 Corrected alignment width/height checks to...
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2017-05-30
gmungoc
JAL-2570 don't zap group colour scheme when mapping...
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2017-05-29
Jim Procter
Merge branch 'bug/JAL-2034contextchange' into develop
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2017-05-29
Jim Procter
JAL-2388 release notes
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2017-05-29
tcofoegbu
JAL-1648 improvement on finder searchbox keyboard contr...
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2017-05-29
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-05-29
Jim Procter
JAL-2520 properly documented as a fixed bug in release...
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2017-05-29
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-05-29
Jim Procter
JAL-2465,JAL-2520,JAL-2533 release notes
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2017-05-29
Jim Procter
Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...
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2017-05-29
Jim Procter
JAL-2533 update javadoc
features/JAL-2465_No-mapping_Jmol-structures-loaded-via-url
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2017-05-29
Jim Procter
JAL-2465 fixed groups for JmolViewerTest.testStructureL...
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2017-05-29
tcofoegbu
JAL-1648 code fix - enter key should pick selected...
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2017-05-29
Jim Procter
Merge branch 'bug/JAL-2536' into develop
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2017-05-29
Jim Procter
JAL-2536 tweak javadoc wording
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2017-05-29
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-05-29
Jim Procter
JAL-2517 release notes
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2017-05-29
Jim Procter
Merge branch 'bug/JAL-2517cancelAppletColour' into...
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2017-05-29
Jim Procter
release notes
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2017-05-29
Jim Procter
JAL-2418 updated JABAWS server in what’s new
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2017-05-29
Jim Procter
JAL-2491 JAL-2526 JAL-2566 JAL-2563 JAL-2547 release...
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2017-05-27
Jim Procter
Merge branch 'bug/JAL-2491' into develop
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2017-05-27
Jim Procter
Merge branch 'bug/JAL-2547tooltipOnGap' into develop
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2017-05-27
Jim Procter
Merge branch 'task/JAL-2562_SequenceI.findPosition...
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2017-05-27
Jim Procter
JAL-2563 failing test to verify SetStatus returns posit...
task/JAL-2562_SequenceI.findPosition
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2017-05-27
Jim Procter
JAL-2563 test to verify SetStatus returns -1 so mouseOv...
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2017-05-27
Jim Procter
Merge branch 'task/JAL-2562_SequenceI.findPosition...
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2017-05-27
Jim Procter
JAL-2547 JAL-2562 rejig SetStatusMessage return value...
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2017-05-27
Jim Procter
Merge branch 'task/JAL-2562_SequenceI.findPosition...
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2017-05-27
Jim Procter
JAL-2526 test and documentation for SeqPanel.setStatus...
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2017-05-27
Jim Procter
JAL-2562 javadoc TODO
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2017-05-26
kiramt
JAL-2491 Missed port to applet from JAL-1691
bug/JAL-2491
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2017-05-26
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-05-26
Jim Procter
JAL-2418 updated JPred documentation and screenshot...
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2017-05-26
Jim Procter
JAL-2418 JAL-2549 JABAWS 2.2 release notes
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2017-05-26
Jim Procter
Merge branch 'features/JAL-2549_updateJABAWSto220'...
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2017-05-26
tcofoegbu
JAL-2465 Improvement to re-instate storing recently...
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2017-05-26
tcofoegbu
JAL-2465 fix to prevent files loaded from the system...
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2017-05-26
tcofoegbu
Merge branch 'features/JAL-1648_cache_user_inputs'...
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2017-05-26
tcofoegbu
JAL-1648 fix to transfer focus back to alignment frame...
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2017-05-25
Jim Procter
Merge branch 'develop' into features/JAL-1648_cache_use...
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2017-05-25
kiramt
JAl-2034 Ported to applet
bug/JAL-2034contextchange
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2017-05-25
kiramt
JAL-2034 don't update overview after click without...
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2017-05-25
kiramt
Merge branch 'bug/JAL-2551' into bug/JAL-2034contextchange
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2017-05-24
kiramt
JAL-2551 Fix to group colouring when group extent is...
bug/JAL-2551
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2017-05-24
kiramt
JAL-2034 Added isDefined flag to SequenceGroup
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2017-05-23
Jim Procter
JAL-2549 RNAAliFold result to annotation file roundtrip...
features/JAL-2549_updateJABAWSto220
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2017-05-23
Jim Procter
JAL-2549 skip ‘Unrecognised Service’ which resolves...
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2017-05-23
Jim Procter
JAL-2549 replace JABAWS 2.1 with 2.2 client and remove...
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2017-05-23
gmungoc
JAL-2547 don't show features in tooltip over a gap
bug/JAL-2547tooltipOnGap
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