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jalview.git
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-2301 table formatted, and corrected to match the... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2281 Use DBRefs.selectRefs to uppercase URL link... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 Refactor applet too commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 Updated and checked messages, English and... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 Updated help documentation commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold... commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-98 ProfileI interface for Profile commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-98 test updated for percentage rounded commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis... commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-98 wording "negatively conserved" now "absence... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 Code tidy commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 Renamed internal use of sequence id / db acces... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 URLLink unit tests updated commit | commitdiff | tree | snapshot
2016-11-01 gmungocConservation now using ResidueCount; tests added commit | commitdiff | tree | snapshot
2016-11-01 gmungocJAL-98 use Integer constants; tests added for propHash... commit | commitdiff | tree | snapshot
2016-11-01 gmungocJAL-98 typo in javadoc commit | commitdiff | tree | snapshot
2016-11-01 gmungocJAL-98 simplified repeat() method commit | commitdiff | tree | snapshot
2016-11-01 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-01 tcofoegbuJAL-2280 refactored and improved structure file identif... commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Refactor SequenceAnnotationReport to use refac... commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Merge commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Changed DB accession id token to $DB_ACCESSION... commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Refactored URL link creation into UrlLink commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Removed unexpected ; from code commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Force double-clicking to use sequence_id cases... commit | commitdiff | tree | snapshot
2016-10-31 gmungocJAL-98 round when formatting dec places commit | commitdiff | tree | snapshot
2016-10-31 kiramtForce double-clicking to use sequence_id cases and... commit | commitdiff | tree | snapshot
2016-10-31 kiramtUpdated messages. commit | commitdiff | tree | snapshot
2016-10-31 kiramtUse ACCESSION_ID for database accession id, and SEQUENC... commit | commitdiff | tree | snapshot
2016-10-27 gmungocJAL-2282 test assertions for 'other' dbsource spikes/geoff spikes/jpred commit | commitdiff | tree | snapshot
2016-10-27 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-10-27 tcofoegbuJAL-2280 Improvement to enable drag'n'drop association... commit | commitdiff | tree | snapshot
2016-10-27 gmungocJAL-98 refactor bleachColour() to ColorUtils commit | commitdiff | tree | snapshot
2016-10-27 gmungocJAL-2287 treat Escape like Cancel in dialog box commit | commitdiff | tree | snapshot
2016-10-26 gmungocJAL-2287 Cancel option on Close Chimera? dialog commit | commitdiff | tree | snapshot
2016-10-26 gmungocMerge branch 'bug/JAL-98consensusMemory' into develop commit | commitdiff | tree | snapshot
2016-10-26 gmungocJAL-2286 modal residue check + commenting commit | commitdiff | tree | snapshot
2016-10-26 gmungocJAL-98 null reference to globalColourScheme as it has... commit | commitdiff | tree | snapshot
2016-10-26 gmungocJAL-2286 javadoc, refactor, unit tests for threshold... commit | commitdiff | tree | snapshot
2016-10-26 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-10-26 tcofoegbuMerge branch 'features/JAL-2284_export-biojsmsa-via... commit | commitdiff | tree | snapshot
2016-10-26 tcofoegbuJAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli commit | commitdiff | tree | snapshot
2016-10-25 gmungocJAL-2286 use constant for fixed colours commit | commitdiff | tree | snapshot
2016-10-25 gmungocJAL-98 javadoc corrected commit | commitdiff | tree | snapshot
2016-10-25 gmungocJAL-98 javadoc added commit | commitdiff | tree | snapshot
2016-10-25 gmungocJAL-98 minor fixes to / tests for annotation derivation commit | commitdiff | tree | snapshot
2016-10-25 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch_fixmaster... commit | commitdiff | tree | snapshot
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff | tree | snapshot
2016-10-25 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' commit | commitdiff | tree | snapshot
2016-10-25 tcofoegbuMerge branch 'bug/JAL-2277_html-output-wrapped-mode... commit | commitdiff | tree | snapshot
2016-10-25 Jim ProcterMerge branch 'sourcepub' into releases/Release_2_10_0_B... commit | commitdiff | tree | snapshot
2016-10-25 Jim ProcterMerge branch 'sourcepub' into develop commit | commitdiff | tree | snapshot
2016-10-25 Jim ProcterJAL-2089 update What's new for 2.10.0b1 commit | commitdiff | tree | snapshot
2016-10-25 tcofoegbuJAL-2277 Improvement to support html+svg export in... bug/JAL-2277_html-output-wrapped-mode commit | commitdiff | tree | snapshot
2016-10-25 gmungocJAL-98 field comments updated commit | commitdiff | tree | snapshot
2016-10-25 gmungocJAL-98 small efficiency fix + commenting commit | commitdiff | tree | snapshot
2016-10-25 gmungocJAL-98 javadoc / comments updated commit | commitdiff | tree | snapshot
2016-10-25 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' Release_2_10_0b1_sourcepub commit | commitdiff | tree | snapshot
2016-10-25 Jim ProcterMerge branch 'sourcepub' into releases/Release_2_10_0_B... commit | commitdiff | tree | snapshot
2016-10-25 Jim ProcterMerge branch 'sourcepub' into develop commit | commitdiff | tree | snapshot
2016-10-25 Jim ProcterJAL-1683 reinstate replacetoken patterns so source... commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterMerge branch 'sourcepub' into develop commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterMerge branch 'sourcepub' into releases/Release_2_10_0_B... commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterJAL-1683 replace version and year in licence header... commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' commit | commitdiff | tree | snapshot
2016-10-24 gmungocJAL-98 fixme comment removed - nothing to do commit | commitdiff | tree | snapshot
2016-10-24 gmungocJAL-98 ResidueCount 100% test coverage (and bug fixes!) commit | commitdiff | tree | snapshot
2016-10-24 kiramtMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-10-24 kiramtUnit tests for UrlLink bug/JAL-2281JAL-2282 commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterMerge branch 'develop' into releases/Release_2_10_0_Branch Release_2_10_0b1 commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterJAL-2089 bump version and release branch info commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterMerge branch 'develop' into releases/Release_2_10_0_Branch commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterJAL-2089 release notes for JAL-2234 commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterMerge branch 'patch/JAL-2234_renameFER1_ARATH' into... commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterJAL-2234 reordered seqs (after sequence data was reorde... commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterJAL-2234 rename seqs for linked jalview examples commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterMerge branch 'develop' into releases/Release_2_10_0_Branch commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterJAL-2089 tweak release note for JAL-2283 commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterJAL-2089 documented additional JAL-2272 CMD-click issue... commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterMerge branch 'bug/JAL-2272cmdClickGroupEdit' into develop commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterMerge branch 'bug/JAL-2283consColourEnabled' into develop commit | commitdiff | tree | snapshot
2016-10-24 gmungocJAL-2272 Cmd-drag to group edit sequences on Mac (Ctrl... bug/JAL-2272cmdClickGroupEdit commit | commitdiff | tree | snapshot
2016-10-24 gmungocJAL-2283 corrected preferences settings for test bug/JAL-2283consColourEnabled commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterMerge branch 'develop' into releases/Release_2_10_0_Branch commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterJAL-2089 JAL-2195 release notes commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterJAL-2089 JAL-2283 release notes commit | commitdiff | tree | snapshot
2016-10-24 kiramtFixed dialog box messages in English and Spanish. Adjus... commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterMerge branch 'bug/JAL-2283consColourEnabled' into develop commit | commitdiff | tree | snapshot
2016-10-24 Jim ProcterJAL-2044 documentation commit | commitdiff | tree | snapshot
2016-10-24 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory commit | commitdiff | tree | snapshot
2016-10-24 kiramtCorrect Preferences to check for SEQUENCE_NAME as well... commit | commitdiff | tree | snapshot
2016-10-24 gmungocJAL-2283 set 'by conservation' correctly when changing... commit | commitdiff | tree | snapshot
2016-10-24 kiramtCode tidy up. Unit test passes. commit | commitdiff | tree | snapshot
2016-10-22 kiramtWorking links menu commit | commitdiff | tree | snapshot
2016-10-21 kiramtFactored URL Link constants out into UrlConstants file. commit | commitdiff | tree | snapshot
2016-10-21 kiramtCreated (failing) unit test for addFeatureLinks commit | commitdiff | tree | snapshot
2016-10-20 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into releas... commit | commitdiff | tree | snapshot
2016-10-20 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch commit | commitdiff | tree | snapshot
2016-10-20 Jim ProcterJAL-2089 update release date for 2.10.0b1 to Tuesday... commit | commitdiff | tree | snapshot
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