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jalview.git
2017-12-08
gmungoc
JAL-2843 toStableString, fromString for Jalview feature...
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2017-12-08
gmungoc
JAL-2843 FeatureRenderer.getFeatureFilters returns...
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2017-12-05
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
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2017-12-04
gmungoc
Merge branch 'spikes/mungo' into features/JAL-1793VCF
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2017-12-04
gmungoc
JAL-2850 JAL-1766 option to load contig sequence refere...
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2017-12-04
gmungoc
JAL-2845 locate reverse strand insertion as complement...
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2017-12-04
gmungoc
JAL-2835 small refactor to only extract transcript...
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2017-12-01
gmungoc
JAL-2835 spike updated to latest (use specific SO term...
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2017-12-01
gmungoc
JAL-2835 refactored to extract specific consequence...
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2017-12-01
gmungoc
JAL-2792 sort feature attributes for output, not for...
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2017-12-01
gmungoc
JAL-2835 additional sub-terms of sequence_variant added
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2017-11-30
gmungoc
JAL-2850 improved use of htsjdk api to read contig...
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2017-11-30
gmungoc
JAL-1766 additional tests for stub htsjdk wrapper
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2017-11-30
Jim Procter
JAL-2849 release notes
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2017-11-30
Jim Procter
Merge branch 'bug/JAL-2849' into develop
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2017-11-30
Jim Procter
JAL-2849 JAL-2863 file format preferences TODO
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2017-11-30
Jim Procter
JAL-2849 fix
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2017-11-28
Jim Procter
Merge branch 'bug/JAL-2859_uniprottowrongpdbid' into...
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2017-11-28
Jim Procter
JAL-2740 release notes
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2017-11-28
Jim Procter
Merge branch 'bug/JAL-2740' into develop
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2017-11-28
Jim Procter
JAL-2827 release notes
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2017-11-28
Jim Procter
Merge branch 'bug/JAL-2827' into develop
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2017-11-28
Jim Procter
JAL-2842 release notes
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2017-11-28
Jim Procter
Merge branch 'bug/JAL-2842' into develop
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2017-11-28
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
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2017-11-28
gmungoc
JAL-2850 MapList.isToForwardStrand added
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2017-11-27
Jim Procter
JAL-2859 disambiguate with PDB ID if no file path
bug/JAL-2859_uniprottowrongpdbid
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2017-11-27
Jim Procter
JAL-2859 failing test demonstrating sequences with...
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2017-11-27
Jim Procter
JAL-2851 JAL-2858 release notes for 2.10.3b1
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2017-11-27
Jim Procter
Merge branch 'bug/JAL-2851' into develop
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2017-11-27
gmungoc
JAL-2850 VCFLoader refactored to load VCF to contig...
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2017-11-24
gmungoc
JAL-2808 update spike to latest
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2017-11-24
gmungoc
JAL-2808 refactoring to better handler filter by Score...
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2017-11-24
gmungoc
JAL-2808 relocate constants for compiler, add COLUMN_CO...
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2017-11-24
gmungoc
JAL-2808 refine FeatureMatcher interface and matcher...
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2017-11-24
gmungoc
JAL-2808 don't cache i18n - MessageManager already...
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2017-11-23
gmungoc
JAL-2808 update spike to latest (filter range tooltip...
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2017-11-23
gmungoc
JAL-2808 refactor KeyedMatcher as FeatureMatcher with...
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2017-11-23
gmungoc
JAL-2808 update spike to latest (filter range, Present...
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2017-11-23
gmungoc
JAL-2808 removed field filters; sort CSQ data by key
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2017-11-23
gmungoc
JAL-2808 added conditions Present, NotPresent as options
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2017-11-23
kiramt
Merge branch 'develop' into bug/JAL-2851
bug/JAL-2851
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2017-11-23
kiramt
JAL-2851 Fix merge error breaking vertical scrolling
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2017-11-23
gmungoc
JAL-2808 refactor conversion of table data to beans...
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2017-11-23
gmungoc
JAL-2808 pass FeatureSettings to controller as array...
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2017-11-22
gmungoc
JAL-2808 update conditions list on change of attribute...
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2017-11-22
gmungoc
JAL-2069 spike updated with latest (FeatureTypeSettings)
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2017-11-22
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
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2017-11-22
gmungoc
JAL-2808 JAL-2069 FeatureTypeSettings (with new Filters...
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2017-11-22
gmungoc
JAL-2069 renamed helper method better
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2017-11-22
gmungoc
JAL-2808 defer dispose to allow screen location to...
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2017-11-22
gmungoc
JAL-2069 Javadoc added only
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2017-11-22
gmungoc
JAL-1424 enhanced to report dynamic keys separately
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2017-11-22
gmungoc
JAL-2808 capture feature attributes datatype (Character...
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2017-11-20
Jim Procter
JAL-2698 only allow InstallAnywhere launches with versi...
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2017-11-20
Jim Procter
JAL-2698 patch path for InstallAnywhere build. Webstart...
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2017-11-17
Jim Procter
JAL-2698 tidy release notes and whats new
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2017-11-17
Jim Procter
JAL-2698 source code licencing
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2017-11-17
Jim Procter
JAL-2698 tidy up release notes
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2017-11-17
Jim Procter
JAL-2698 Cached PDB Entries -> Cached Structures in...
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2017-11-17
Jim Procter
JAL-2466 revised help text for sort by PID
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2017-11-17
Jim Procter
JAL-2698 what’s new and release notes
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2017-11-17
Jim Procter
JAL-2822 known defect for 2.10.3
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2017-11-17
Jim Procter
Merge branch 'bug/JAL-2784' into develop
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2017-11-17
Jim Procter
JAL-2841 JAL-2791 new known defect
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2017-11-17
Jim Procter
JAL-2541 known defect
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2017-11-17
Jim Procter
JAL-2684 clarify release notes
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2017-11-17
Jim Procter
Merge branch 'bug/JAL-2821' into develop
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2017-11-17
Jim Procter
JAL-2840 release notes
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2017-11-17
Jim Procter
Merge branch 'bug/JAL-2837' into develop
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2017-11-17
kiramt
Merge branch 'develop' into bug/JAL-2837
bug/JAL-2837
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2017-11-17
Jim Procter
Merge branch 'doc/JAL-2494_JAL-2828_mergefindAnnotation...
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2017-11-17
kiramt
Merge branch 'develop' into bug/JAL-2837
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2017-11-17
Jim Procter
JAL-2811 release note
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2017-11-17
Jim Procter
JAL-2541 not in 2.10.3, JAL-2831 signed off.
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2017-11-17
Jim Procter
JAL-2698 11th hour release today
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2017-11-17
Jim Procter
Merge branch 'bug/JAL-2831' into develop
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2017-11-17
gmungoc
JAL-2808 set (read-only) condition text field as disabled
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2017-11-16
Jim Procter
JAL-2541 JAL-2829 JAL-2830 JAL-2822 catch all release...
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2017-11-16
Jim Procter
Merge branch 'bug/JAL-2829deleteCharsWithGaps' into...
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2017-11-16
gmungoc
JAL-2069 fix minor bugs in variable setting
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2017-11-16
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
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2017-11-16
kiramt
JAL-2831 Removed unwanted hidden sequences checks
bug/JAL-2831
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2017-11-16
gmungoc
JAL-2069 removed unused and redundant thresholdIsMinMax
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2017-11-16
gmungoc
JAL-2816 JAL-2835 additional tests to include colour...
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2017-11-16
kiramt
JAL-2842 remove infinite loop in cursor move
bug/JAL-2842
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2017-11-16
gmungoc
JAL-2835 update test for array-valued attribute name
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2017-11-16
gmungoc
JAL-2835 update test for CSQ data held as a Map
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2017-11-16
gmungoc
JAL-2835 test updated for colour by 'nested attribute'
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2017-11-16
gmungoc
JAL-2816 tests for findFeaturesAtColumn
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2017-11-15
kiramt
JAL-2831 Don't show cursor if position in hidden region
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2017-11-15
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
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2017-11-15
gmungoc
JAL-2816 exclude filtered / thresholded out features...
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2017-11-15
kiramt
JAL-2811 Updated following review
bug/JAL-2811
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2017-11-15
kiramt
JAL-2840 fix wrapped scrolling when using cursor at...
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2017-11-15
kiramt
JAL-2834 JAL-2836 temporarily disabled wrapped mode...
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2017-11-15
gmungoc
JAL-2835 spike updated with latest
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2017-11-15
gmungoc
JAL-2835 take all CSQ fields; catch invalid field match...
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2017-11-15
gmungoc
JAL-2835 support filter/colour by nested attribute...
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2017-11-15
gmungoc
JAL-2835 code tidy (generic type constructors)
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