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jalview.git
2019-07-05 gmungocJAL-3187 initial refactoring towards peptide variant... commit | commitdiff | tree | snapshot
2019-07-05 gmungocJAL-1793 apply URL decoding when saving VCF attribute... commit | commitdiff | tree | snapshot
2019-06-18 gmungocJAL-3187 javadoc commit | commitdiff | tree | snapshot
2019-06-18 gmungocJAL-3304 option to export linked features also for... commit | commitdiff | tree | snapshot
2019-06-18 gmungocJAL-3304 option to export linked features in Jalview... commit | commitdiff | tree | snapshot
2019-06-18 gmungocJAL-3187 i18n show linked features checkboxes commit | commitdiff | tree | snapshot
2019-06-18 gmungocJAL-3305 mirror popup menu column selections in split... commit | commitdiff | tree | snapshot
2019-06-17 gmungocJAL-2792 JAL-3187 linked features (if shown) in Feature... commit | commitdiff | tree | snapshot
2019-06-17 gmungocJAL-3187 update alignAs code and unit tests for 'shared... commit | commitdiff | tree | snapshot
2019-06-17 gmungocJAL-3187 update unit test - protein variants not now... commit | commitdiff | tree | snapshot
2019-06-17 gmungocJAL-3187 add sequence to feature details table (and... commit | commitdiff | tree | snapshot
2019-06-14 gmungocJAL-3302 transfer visible 'linked' features to Chimera commit | commitdiff | tree | snapshot
2019-06-13 gmungocJAL-3303 ignore deletions when computing peptide variants commit | commitdiff | tree | snapshot
2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-06-11 gmungocJAL-3143 also parse "phase" from JSON response if present commit | commitdiff | tree | snapshot
2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-06-11 gmungocJAL-3111 update release date placeholder commit | commitdiff | tree | snapshot
2019-06-11 gmungocJAL-3288 fixes for gain/lose focus commit | commitdiff | tree | snapshot
2019-06-11 gmungocJAL-3187 CDS has same dataset sequence as transcript commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresJAL-3248 quick fix for build.gradle when pandoc not... commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresJAL-3248 building.html now generated by pandoc 'brew... commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresJAL-3248 added conversion of building.md to building... commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresMerge branch 'develop' into task/JAL-3248_rewritten_bui... commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresMerge branch 'task/JAL-3248_rewritten_building_md_instr... commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresJAL-3248 Building from source documentation in markdown... commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresJAL-3248 Building from source documentation in markdown... commit | commitdiff | tree | snapshot
2019-06-07 Ben SoaresJAL-3248 Almost completed building doc commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-3187 save and restore flags for show complement... commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-3187 change fields to local variables commit | commitdiff | tree | snapshot
2019-06-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-06-07 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into... commit | commitdiff | tree | snapshot
2019-06-07 Ben SoaresJAL-3248 a bit more commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-3187 Viewport schema attributes for showComplementF... commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-3251 added optional attributes Sequence.biotype... commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-2738 use GeneLocus extends DBRefEntry to hold chrom... commit | commitdiff | tree | snapshot
2019-06-07 Ben SoaresMerge branch 'develop' into task/JAL-3248_rewritten_bui... commit | commitdiff | tree | snapshot
2019-06-07 Ben SoaresJAL-3225 removing slightly misleading rewrite of .class... commit | commitdiff | tree | snapshot
2019-06-06 Ben SoaresJAL-3225 Classpath now made in eclipse.classpath.file... commit | commitdiff | tree | snapshot
2019-06-06 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into... commit | commitdiff | tree | snapshot
2019-06-06 gmungocJAL-3187 deletions (of Castor code) after merge from... commit | commitdiff | tree | snapshot
2019-06-06 gmungocMerge branch 'develop' into trialMerge commit | commitdiff | tree | snapshot
2019-06-06 gmungocJAL-3187 commit to enable merge from develop commit | commitdiff | tree | snapshot
2019-06-05 gmungocJAL-3288 override JInternalFrame.setSelected() to avoid... bug/JAL-3288splitFrameMenusJava11 commit | commitdiff | tree | snapshot
2019-06-04 Ben SoaresJAL-3287 correct local file URI for appbase and getdown... commit | commitdiff | tree | snapshot
2019-06-04 Ben SoaresJAL-3287 adjustment to HelpLinksChecker commit | commitdiff | tree | snapshot
2019-06-04 Ben SoaresJAL-3287 adjustment to HelpLinksChecker to run in Windo... commit | commitdiff | tree | snapshot
2019-06-04 Ben SoaresJAL-3248 small edits commit | commitdiff | tree | snapshot
2019-05-31 Ben SoaresJAL-3247 Adjusted Uninstall Old Jalview.app to just... commit | commitdiff | tree | snapshot
2019-05-31 Ben SoaresJAL-3248 extra tl;dr commit | commitdiff | tree | snapshot
2019-05-30 Ben SoaresJAL-3248 Essential tl;dr :) commit | commitdiff | tree | snapshot
2019-05-30 Ben SoaresMerge branch 'develop' into task/JAL-3248_rewritten_bui... commit | commitdiff | tree | snapshot
2019-05-29 gmungocJAL-2738 error logging if no ##reference found commit | commitdiff | tree | snapshot
2019-05-29 gmungocJAL-2738 accept .csi, default to GRCh37:homo_sapiens... commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresJAL-3277 Fixed getdown splashscreen. For unknown reason... commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresJAL-1988 Some TEST code accidentally left in now remove... commit | commitdiff | tree | snapshot
2019-05-28 Jalview Development... JAL-3247 sign the AppleScript uninstaller commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresJAL-3141 deleted TODO comment in Messages_es commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresMerge branch 'develop' into task/JAL-3141_JAL-3247_merge commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresJAL-3248 saving commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresJAL-3141 Added HashMap types for Java 1.8 compatibility commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresMerge branch 'task/JAL-3141_Customise_checkbox' into... commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresJAL-3141 Object array cast missing commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresMerge branch 'task/JAL-3247_JAL-3246_JAL-3254_JAL-3236_... commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresMerge branch 'develop' into task/JAL-3247_JAL-3246_JAL... commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresJAL-3247 Added AppleScript based App to run old Jalview... commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresJAL-3141 Generified the JvUtils.buildComboWithTooltips... commit | commitdiff | tree | snapshot
2019-05-27 gmungocJAL-3141 test file in test folder not examples commit | commitdiff | tree | snapshot
2019-05-25 Ben SoaresJAL-3141 One more error log fix commit | commitdiff | tree | snapshot
2019-05-25 Ben SoaresJAL-3141 Added tooltips on Schemes dropdown and Customi... commit | commitdiff | tree | snapshot
2019-05-24 Ben SoaresJAL-3141 Fixes recommended from gmc's test commit | commitdiff | tree | snapshot
2019-05-24 gmungocJAL-1988 Spanish typo corrección commit | commitdiff | tree | snapshot
2019-05-24 Ben SoaresJAL-3141 Fixed vertical size of the example filenames... commit | commitdiff | tree | snapshot
2019-05-24 Ben SoaresJAL-3141 Fixed tests commit | commitdiff | tree | snapshot
2019-05-24 Ben SoaresJAL-3141 Reworked a lot of BackupFiles to allow the... commit | commitdiff | tree | snapshot
2019-05-22 Ben SoaresMerge branch 'bug/JAL-3141_backupfiles_prefs_widget_dis... commit | commitdiff | tree | snapshot
2019-05-22 gmungocJAL-3111 help file spelling correction commit | commitdiff | tree | snapshot
2019-05-21 Ben SoaresJAL-3247 Launcher start improvements. RPM and DEB no... commit | commitdiff | tree | snapshot
2019-05-21 gmungocJAL-3273 small correction to expected result calculation commit | commitdiff | tree | snapshot
2019-05-20 Ben SoaresMerge branch 'task/JAL-3254_improved_max_memory_stack_s... commit | commitdiff | tree | snapshot
2019-05-20 Ben SoaresJAL-3247 Unix shell installer and tar archive corrected... commit | commitdiff | tree | snapshot
2019-05-20 Ben SoaresJAL-3254 Improved memory setting (allows mem for OS... commit | commitdiff | tree | snapshot
2019-05-13 Jim ProcterMerge branch 'task/JAL-3247_Install4j_improvements... commit | commitdiff | tree | snapshot
2019-05-13 Ben SoaresMerge branch 'task/JAL-3236_install4j_linux_unix_userla... commit | commitdiff | tree | snapshot
2019-05-13 Ben SoaresJAL-3247 nogradle option on this mac build/install... commit | commitdiff | tree | snapshot
2019-05-13 Ben SoaresJAL-3247 JAL-3254 JAL-3260 Fixed: JVL file jalview... commit | commitdiff | tree | snapshot
2019-05-10 Jim ProcterMerge branch 'task/JAL-3246_local_getdown_files' into... commit | commitdiff | tree | snapshot
2019-05-10 Ben SoaresJAL-3246 JAL-3247 Reworked JVL files as getdown.txt... commit | commitdiff | tree | snapshot
2019-05-10 Jim ProcterMerge branch 'task/JAL-3236_install4j_linux_unix_userla... commit | commitdiff | tree | snapshot
2019-05-09 Ben SoaresJAL-3236 Added unixInstaller to install4jMediaTypes... commit | commitdiff | tree | snapshot
2019-05-09 Jim ProcterMerge branch 'task/JAL-3246_local_getdown_files' into... commit | commitdiff | tree | snapshot
2019-05-09 Ben SoaresJAL-3247 JAL-3254 Ensure .jvp and .jvl appear first... commit | commitdiff | tree | snapshot
2019-05-09 Ben SoaresJAL-3247 JAL-3254 Fixed file association launch behavio... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3246 add -Pgetdown_local=true to use local files commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 JAL-3254 changing default location of jalview... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Getdown now opening any files thrown... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Automatically creating correct file... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Automatically creating correct file... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 Script to produce auto file association files... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 Note in launcher.log when using a JVL file commit | commitdiff | tree | snapshot
2019-05-07 Ben SoaresJAL-3247 Changed JVL file to be a props file, with... commit | commitdiff | tree | snapshot
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