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jalview.git
2017-02-09 gmungocJAL-2371 skip upper-casing consensus as it already is commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2405 check for circular reference in SequenceGroup... commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2405 set initial selection group alignment context commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2405 enable nucleotide/peptide colour schemes in... commit | commitdiff | tree | snapshot
2017-02-08 gmungocJAL-2405 set context on selection group for tailored... commit | commitdiff | tree | snapshot
2017-02-08 gmungocJAL-2401 fix for NPE on selectedButtons, tweak for... commit | commitdiff | tree | snapshot
2017-02-07 Jim ProcterMerge branch 'features/JAL-2371collectionColourScheme... commit | commitdiff | tree | snapshot
2017-02-07 gmungocJAL-2401 Lower Case Colour toggleable, help text added commit | commitdiff | tree | snapshot
2017-02-01 gmungocJAL-2371 (slight!) simplification of isApplicableTo() commit | commitdiff | tree | snapshot
2017-02-01 gmungocJAL-2383 and Spanish! commit | commitdiff | tree | snapshot
2017-01-31 gmungocJAL-2371 commented code removed only commit | commitdiff | tree | snapshot
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... commit | commitdiff | tree | snapshot
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane... commit | commitdiff | tree | snapshot
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader... commit | commitdiff | tree | snapshot
2017-01-27 gmungocJAL-2099 belated unit test commit | commitdiff | tree | snapshot
2017-01-27 gmungocJAL-2360 JAL-2371 updates from review CR-JAL-1 commit | commitdiff | tree | snapshot
2017-01-26 gmungocJAL-2360 corrected comment commit | commitdiff | tree | snapshot
2017-01-26 gmungocJAL-2360 C is Pink with consensus > 85% (not 100%) commit | commitdiff | tree | snapshot
2017-01-26 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-26 gmungocJAL-2344 test fix and code tidy for review comments commit | commitdiff | tree | snapshot
2017-01-26 gmungocJAL-2380 code tidy after review commit | commitdiff | tree | snapshot
2017-01-25 gmungocJAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid... commit | commitdiff | tree | snapshot
2017-01-23 gmungocJAL-2386 unit tests for change colour (and minor refact... commit | commitdiff | tree | snapshot
2017-01-23 gmungocJAL-2386 simplify changeColour (doesn't change colour... commit | commitdiff | tree | snapshot
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-20 gmungocJAL-2385 tweak to applet 'switch colour slider context' commit | commitdiff | tree | snapshot
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-20 gmungocJAL-2385 update slider settings when switching slider... commit | commitdiff | tree | snapshot
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-20 gmungocJAL-2383 fixup from last merge commit | commitdiff | tree | snapshot
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-20 gmungocJAL-2383 check for null, spelling commit | commitdiff | tree | snapshot
2017-01-20 gmungocJAL-2383 make popup colour menu order and wording consi... commit | commitdiff | tree | snapshot
2017-01-20 gmungocJAL-2383 restore group conservation slider setting... commit | commitdiff | tree | snapshot
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-19 gmungocJAL-2383 restore PID colour threshold from project... commit | commitdiff | tree | snapshot
2017-01-19 gmungocJAL-2370 unit tests for extracted ColumnSelection.stret... commit | commitdiff | tree | snapshot
2017-01-19 gmungocJAL-2370 corrected applet mouse drag, refactored into... commit | commitdiff | tree | snapshot
2017-01-17 gmungocJAL-2370 fix bug when hiding a range including two... commit | commitdiff | tree | snapshot
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-16 gmungocJAL-1270 class renamed commit | commitdiff | tree | snapshot
2017-01-16 gmungocJAL-2380 fix Matrix.postMultiply() commit | commitdiff | tree | snapshot
2017-01-16 gmungocJAL-1270 tweaks to AlignmentGenerator / client class commit | commitdiff | tree | snapshot
2017-01-12 gmungocJAL-1270 renamed AlignmentGenerator, and added peptide... commit | commitdiff | tree | snapshot
2017-01-12 gmungocJAL-2379 null references to PCA model when panel is... commit | commitdiff | tree | snapshot
2017-01-12 gmungocJAL-2344 now flagging formats as 'identifiable' instead... commit | commitdiff | tree | snapshot
2017-01-11 gmungocJAL-2344 separated AlignmentFileI into AlignmentFileRea... commit | commitdiff | tree | snapshot
2017-01-11 gmungocJAL-2344 groovy script that registers a new file format commit | commitdiff | tree | snapshot
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI... commit | commitdiff | tree | snapshot
2017-01-11 gmungocJAL-2344 addSequence() method added to support Groovy... commit | commitdiff | tree | snapshot
2017-01-10 gmungocJAL-2377 avoid infinite loop formatting 1.0E-310 commit | commitdiff | tree | snapshot
2017-01-09 gmungocJAL-2371 pull up isNucleotide to SequenceCollectionI commit | commitdiff | tree | snapshot
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter... commit | commitdiff | tree | snapshot
2017-01-06 gmungocJAL-2371 slight simplification of findColour overrides commit | commitdiff | tree | snapshot
2017-01-06 gmungocJAL-2371 correct Clustal, Blosum, PID colouring of... commit | commitdiff | tree | snapshot
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-06 gmungocJAL-2360 findColour() with no args removed from ColourS... commit | commitdiff | tree | snapshot
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-06 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-05 gmungocJAL-2374 unit test for (modified) Alignment.findGroup() commit | commitdiff | tree | snapshot
2017-01-05 gmungocJAL-2374 fix popup out by one and multiple groups bugs commit | commitdiff | tree | snapshot
2017-01-05 gmungocJAL-2371 add test for toggling ignore gaps with PID... commit | commitdiff | tree | snapshot
2017-01-05 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-05 gmungocJAL-2373 set state of Above PID, By Conservation in... commit | commitdiff | tree | snapshot
2017-01-05 gmungocJAL-2371 tests added commit | commitdiff | tree | snapshot
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI commit | commitdiff | tree | snapshot
2016-12-29 gmungocJAL-2630 first pass groovy colour scheme (with slight... commit | commitdiff | tree | snapshot
2016-12-23 gmungocJAL-2360 removed UserDefinedColours.userColourSchemes commit | commitdiff | tree | snapshot
2016-12-23 gmungocJAL-2120 JAL-2360 remove obsolete PDBViewer commit | commitdiff | tree | snapshot
2016-12-22 gmungocJAL-2360 fix bug that prematurely created a SequenceGroup commit | commitdiff | tree | snapshot
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper... commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 set new/loaded colour scheme name correctly commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 simplified code to create a new colour scheme commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 added a table to show score colours commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 ColourMenuHelper now builds and selects items... commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 comment only commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 tidy up, simplify isApplicableTo test commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 no RNAHelices colouring for groups commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2361 Blosum is enabled for peptide commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-1421 add types to Map commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 fix incorrect action on Cancel user defined... commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 tidy spelling and file contents order only commit | commitdiff | tree | snapshot
2016-12-21 gmungocJAL-2360 Javadoc and test cases for findAnnotation commit | commitdiff | tree | snapshot
2016-12-20 gmungocJAL-2360 testRegisterColourScheme to demonstrate a... commit | commitdiff | tree | snapshot
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF... commit | commitdiff | tree | snapshot
2016-12-19 gmungocJAL-2360 amended toAppletParameter() for reproducible... commit | commitdiff | tree | snapshot
2016-12-19 gmungocJAL-2361 select colour menu item by matching its name... commit | commitdiff | tree | snapshot
2016-12-16 gmungocJAL-2356 enhanced unit test to verify reuse (or not... commit | commitdiff | tree | snapshot
2016-12-16 Jim ProcterJAL-2360 report line number when threshold cannot be... commit | commitdiff | tree | snapshot
2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test... commit | commitdiff | tree | snapshot
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),... commit | commitdiff | tree | snapshot
2016-12-16 gmungocJAL-1705 JAL-98 use SortedMap as more accurate type... commit | commitdiff | tree | snapshot
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, commit | commitdiff | tree | snapshot
2016-12-16 gmungocJAL-1354 use i18n text for expected value commit | commitdiff | tree | snapshot
2016-12-14 gmungocJAL-2360 test added commit | commitdiff | tree | snapshot
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