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jalview.git
2014-10-20 Charles OfoegbuModified SequenceFetcher to include Intermine as a... commit | commitdiff | tree | snapshot
2014-10-09 Charles OfoegbuUpdated gitignore to ignore .settings/ commit | commitdiff | tree | snapshot
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support commit | commitdiff | tree | snapshot
2014-10-03 Charles Ofoegburemoved local test data commit | commitdiff | tree | snapshot
2014-10-03 Charles OfoegbuLocal branch test commit | commitdiff | tree | snapshot
2014-09-18 gmungocMerge branch 'JAL-1360_Branch' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-09-18 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... commit | commitdiff | tree | snapshot
2014-09-18 gmungocJAL-1360 tweaks to match help page conventions, size... commit | commitdiff | tree | snapshot
2014-09-18 gmungocJAL-1360 consistent (bold) help page headings commit | commitdiff | tree | snapshot
2014-09-18 gmungocJAL-1360 Javadoc, Vector replaced with ArrayList, code... commit | commitdiff | tree | snapshot
2014-09-18 gmungocJAL-1360 Javadoc/JUnit commit | commitdiff | tree | snapshot
2014-09-18 gmungocJAL-1360 refactored utility method to ColorUtils class commit | commitdiff | tree | snapshot
2014-09-18 gmungocJAL-1544 it's --> its commit | commitdiff | tree | snapshot
2014-09-17 gmungocJAL-1360 updates to online help for user define colour... commit | commitdiff | tree | snapshot
2014-09-17 gmungocCorrect colour for text when colour set commit | commitdiff | tree | snapshot
2014-09-17 gmungocJAL-1360 refactored for consistent lighter/darker for commit | commitdiff | tree | snapshot
2014-09-17 gmungocJAL-1360 workaround for user defined colours display... commit | commitdiff | tree | snapshot
2014-09-15 gmungocJAL-1542 script to show aligned positions of selected... commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... Merge branch 'Release_2_8_2_Branch' of https://source... commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... Merge branch 'bug/JAL-1486_flatfile' into Release_2_8_2... commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... JAL-1486 JAL-1543 pushed alignment viewport->view-... commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... formatting and organise imports commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... JAL-1486 fix: pass selected region to jalview.io via... commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... JAL-1199 add stockholm output to list of AppletFormatAd... commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... JAL-1486 JAL-535 refactor code for trimming alignment... commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... JAL-535 tidy interface definition and documentation commit | commitdiff | tree | snapshot
2014-09-12 gmungocJAL-1516 handle null annotations commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... JAL-1516 Annotation row score output script for jalview... commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... Merge branch 'features/JAL-1333' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... JAL-1333 fix imports commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... Merge branch 'features/JAL-1333' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... JAL-1333 log4j/slf additional jars commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... JAL-1333 add log4j-slf4j bridge commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... Merge branch 'features/JAL-1333' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... JAL-1333 finessing log4j and slf dependencies for struc... commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... JAL-1333 JAL-1533 todo to get Chimera superposing prope... commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... JAL-1333 more superposition debugging and deadlock... commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... JAL-1379 Jpred JABA client test harness commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... JAL-1333 allow reuse of existing chimera for new or... commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... JAL-1333 more refinements - deadlocks still possible... commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... JAL-674 futzing with bugs commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... JAL-795 take colour from annotation if colour is present commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... ensure the dataset is instantiated before materialising... commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... JAL-1379 new look JPred results commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... JAL-1520 switch between Protein and non-canonical RNA... commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... JAL-1028 JAL-1142 refactor test to allow reuse of secon... commit | commitdiff | tree | snapshot
2014-07-08 j.procter@dundee... JAL-1333 allow reuse of existing viewers (of a specifie... commit | commitdiff | tree | snapshot
2014-07-08 j.procter@dundee... JAL-1333 more efficient color statement commit | commitdiff | tree | snapshot
2014-07-04 j.procter@dundee... JAL-1333 more abstraction and refactoring and working... commit | commitdiff | tree | snapshot
2014-07-03 j.procter@dundee... Merge branch 'Release_2_8_2_Branch' into features/JAL... commit | commitdiff | tree | snapshot
2014-07-03 j.procter@dundee... Merge branch 'hotfix/JAL-1530' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-07-03 Jim Procterfixes JAL-1530 commit | commitdiff | tree | snapshot
2014-07-02 Jim Procterrevalidate appears to have gone away ?? (java 1.7 upgra... commit | commitdiff | tree | snapshot
2014-07-02 Jim Procterformatting commit | commitdiff | tree | snapshot
2014-07-02 Jim ProcterJAL-1333 JAL-1527 refactors to create core structure... commit | commitdiff | tree | snapshot
2014-07-02 Jim ProcterJAL-1333 test suite for key functionality of java inter... commit | commitdiff | tree | snapshot
2014-07-02 Jim Procter JAL-1333 Chimera specific code extracted from the... commit | commitdiff | tree | snapshot
2014-07-01 Jim ProcterMerge branch 'feature/JAL-1333' into features/JAL-1333 commit | commitdiff | tree | snapshot
2014-06-23 Jim ProcterMerge branch 'JAL-1526' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-06-23 Jim ProcterJAL-1526 simple function to write a snapshot of the... commit | commitdiff | tree | snapshot
2014-06-12 Jim ProcterMerge branch 'hotfix/JAL-1524' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-06-12 Jim ProcterMerge branch 'hotfix/JAL-1524' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-06-12 Jim ProcterJAL-1524 fix commit | commitdiff | tree | snapshot
2014-06-10 Jim ProcterMerge branch 'feature/JAL-1379' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-06-10 Jim ProcterJAL-1379 a JPred v3.0.1 client via JABA 2.1 commit | commitdiff | tree | snapshot
2014-06-10 Jim ProcterJAL-1379 allow services with an MSA interface to create... commit | commitdiff | tree | snapshot
2014-06-10 Jim Proctertidy source commit | commitdiff | tree | snapshot
2014-06-10 Jim ProcterJAL-1379 allow JABA2 tests to run on local or default... commit | commitdiff | tree | snapshot
2014-06-10 Jim ProcterJAL-1379 refactor Jws2 service client so dynamic servic... commit | commitdiff | tree | snapshot
2014-06-06 Jim ProcterJAL-1520 fix unicode translation errors. commit | commitdiff | tree | snapshot
2014-06-06 Jim ProcterJAL-1520 fix unicode translation errors. commit | commitdiff | tree | snapshot
2014-06-06 Jim ProcterJAL-1519 make the splash screen larger/more readable commit | commitdiff | tree | snapshot
2014-06-06 Jim ProcterJAL-1519 - tidy build properties management code commit | commitdiff | tree | snapshot
2014-06-06 Jim ProcterJAL-1519 fix author update issue (doh) commit | commitdiff | tree | snapshot
2014-06-06 Jim ProcterJAL-1140 Add Anne Menard to author list commit | commitdiff | tree | snapshot
2014-06-06 Jim ProcterJAL-1517 copyright and formatting commit | commitdiff | tree | snapshot
2014-06-06 Jim ProcterJAL-1518 drop Jalopy from utils directory commit | commitdiff | tree | snapshot
2014-06-06 Jim ProcterJAL-1517 copyright and formatting commit | commitdiff | tree | snapshot
2014-06-06 Jim ProcterJAL-1517 source formatting commit | commitdiff | tree | snapshot
2014-06-06 Jim ProcterJAL-1518 drop Jalopy from utils directory commit | commitdiff | tree | snapshot
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 commit | commitdiff | tree | snapshot
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 commit | commitdiff | tree | snapshot
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-06-04 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-06-04 Jim ProcterJAL-1503 typo commit | commitdiff | tree | snapshot
2014-06-04 Jim ProcterMerge branch 'develop' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-06-04 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-06-04 Jim ProcterJAL-1503 update author list for 2.8.1 commit | commitdiff | tree | snapshot
2014-06-04 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-06-04 Jim ProcterJAL-690 JAL-1503 make file associations optional for... commit | commitdiff | tree | snapshot
2014-06-04 Jim ProcterMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2014-06-04 Jim ProcterJAL-952 fixed unresolved conflict breaking build commit | commitdiff | tree | snapshot
2014-06-04 Jim ProcterJalview 2.8.2 release branch commit | commitdiff | tree | snapshot
2014-06-04 Jim ProcterJAL-952 fixed unresolved conflict breaking build commit | commitdiff | tree | snapshot
2014-06-04 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-06-04 Jim ProcterJAL-1503 tweak whatsNew document commit | commitdiff | tree | snapshot
2014-06-04 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-06-04 Jim ProcterJAL-1503 JAL-690 document .jvp in release notes commit | commitdiff | tree | snapshot
2014-06-04 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-06-04 Jim ProcterJAL-1514 - add jalview.org and dundee to explore if... commit | commitdiff | tree | snapshot
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