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jalview.git
2016-04-05 Jim ProcterJAL-2046 remove javadoc commit | commitdiff | tree | snapshot
2016-04-05 Jim ProcterJAL-2046 simpler deriveSequence - promote to dataset... commit | commitdiff | tree | snapshot
2016-04-05 Jim ProcterJAL-2046 clarify contract for copy constructor and... commit | commitdiff | tree | snapshot
2016-04-05 Jim ProcterJAL-2046 explicitly copy char[] when cloning sequence... commit | commitdiff | tree | snapshot
2016-04-05 Jim ProcterJAL-2046 safer createDatasetSequence manipulates privat... commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2046 basic test to make sure any derived sequence... commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterMerge branch 'optimisation/JAL-2001' into develop commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 drop isSelected(int) in favour of original... commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 catch -ve column values commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 TODO for new ColumnSelection API commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 - note about possible side effect on JalviewLi... commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2010 refactoring todo commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 use fast column selection test commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-969 refactor columnselection operation (during... commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 faster check for a column being selected commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 javadoc commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 faster getMax/getMin selected column, with... commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 JAL-1722 - store selection as ArrayList and... commit | commitdiff | tree | snapshot
2016-04-01 gmungocMerge branch 'features/JAL-653_JAL-1766_htslib_refseqsu... commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-1705 ensure the right mapping is used to align... commit | commitdiff | tree | snapshot
2016-04-01 tcofoegbuJAL-2048 Update to structureviz2 package from cytoscape commit | commitdiff | tree | snapshot
2016-04-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-2046 fix for broken test for deriveSequence commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-1705 reworked AlignmentUtils.makeCdsAlignment and... commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-653 updated test to match parsing of multi-valued... commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-1705 tweak to MapList.toString for debugging commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-1705 generalised getLength() to handle [start1... commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-1705 test updated for canonicalised UNIPROT sequenc... commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-1705 include stop codon in mapped CDS range so... commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-2037 set DBRefEntry.version to "0" not "" in EMBL... commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-1705 fetch all Ensembl xrefs (except GO terms) commit | commitdiff | tree | snapshot
2016-04-01 tcofoegbuJAL-2045 JAL-2047 improvement for sorting PDB quality... commit | commitdiff | tree | snapshot
2016-03-31 tcofoegbuJAL-2035 improvement to add binding to multiple model commit | commitdiff | tree | snapshot
2016-03-30 tcofoegbuJAL-1668 further clean-up of popup menu and NPE check... commit | commitdiff | tree | snapshot
2016-03-30 tcofoegbuJAL-2038 bug fix for NPE while setting progress message... commit | commitdiff | tree | snapshot
2016-03-28 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-03-28 tcofoegbuJAL-1919 Fixed broken test in DBRefUtilsTest commit | commitdiff | tree | snapshot
2016-03-28 tcofoegbuJAL-1668 removed redundant UI elements in PopupMenu... commit | commitdiff | tree | snapshot
2016-03-28 gmungocJAL-1705 Javadoc / debug output tweaks commit | commitdiff | tree | snapshot
2016-03-28 gmungocJAL-2016 push getFeatureColourScheme(source) into Seque... commit | commitdiff | tree | snapshot
2016-03-28 gmungocJAL-2036 update AlignFrame menus when dbreffetcher... commit | commitdiff | tree | snapshot
2016-03-25 tcofoegbuJAL-2035 improvement to bind Jalview to Chimera model... commit | commitdiff | tree | snapshot
2016-03-24 tcofoegbuJAL-1919 Settings to disable duplicate generation of... commit | commitdiff | tree | snapshot
2016-03-24 tcofoegbuJAL-1479 Commented out debug sysout's for SiftsClient commit | commitdiff | tree | snapshot
2016-03-24 tcofoegbuJAL-1919 Added ability to generate temprature factor... commit | commitdiff | tree | snapshot
2016-03-24 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-03-24 tcofoegbufixed applet build commit | commitdiff | tree | snapshot
2016-03-24 gmungocJAL-1705 removed experimental 'highlight selection... commit | commitdiff | tree | snapshot
2016-03-24 gmungocJAL-2032 structure follow mouseover in a copy of a... commit | commitdiff | tree | snapshot
2016-03-24 tcofoegbuJAL-1919 set DEFUALT_STRUCTURE_FORMAT to PDB commit | commitdiff | tree | snapshot
2016-03-23 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting... commit | commitdiff | tree | snapshot
2016-03-23 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-03-23 gmungocJAL-1705 add DBRefEntry for 'self' to retrieved transcr... commit | commitdiff | tree | snapshot
2016-03-23 gmungocJAL-1997 default empty tooltip required for correct... commit | commitdiff | tree | snapshot
2016-03-22 tcofoegburesolve conflict with Mungo's merge commit | commitdiff | tree | snapshot
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher... commit | commitdiff | tree | snapshot
2016-03-22 gmungocMerge branch 'features/JAL-653_JAL-1766_htslib_refseqsu... commit | commitdiff | tree | snapshot
2016-03-22 gmungocJAL-1705 add xref seqs to 'parent' dataset only if... commit | commitdiff | tree | snapshot
2016-03-22 gmungocJAL-1191 isolated SequenceOntology (BioJava wrapper... commit | commitdiff | tree | snapshot
2016-03-22 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-03-21 tcofoegbuJAL-1919 refactor moved StructureViewerSettings commit | commitdiff | tree | snapshot
2016-03-21 gmungocMerge branch 'features/JAL-653_JAL-1766_htslib_refseqsu... commit | commitdiff | tree | snapshot
2016-03-21 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-03-21 gmungocJAL-2029 further fixes to get correct xrefs and xrefs... commit | commitdiff | tree | snapshot
2016-03-21 tcofoegbumerged features/JAL-1919_mmCIF-Support to develop commit | commitdiff | tree | snapshot
2016-03-21 tcofoegbudevelop merge features/JAL-1919_mmCIF-Support commit | commitdiff | tree | snapshot
2016-03-21 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... commit | commitdiff | tree | snapshot
2016-03-21 gmungocJAL-1855 dbfetch from /ena_sequence/, /ena_coding/ commit | commitdiff | tree | snapshot
2016-03-21 gmungocJAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings commit | commitdiff | tree | snapshot
2016-03-21 tcofoegbuJAL-2028 added improvement for preconfigured ordering... commit | commitdiff | tree | snapshot
2016-03-21 tcofoegbudevelop merge commit | commitdiff | tree | snapshot
2016-03-21 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-03-21 tcofoegbumungo merge commit | commitdiff | tree | snapshot
2016-03-21 tcofoegbudevelop merge commit | commitdiff | tree | snapshot
2016-03-21 tcofoegbuJAL-1667 Changed PDBSearchPanel's search result layout... commit | commitdiff | tree | snapshot
2016-03-16 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-03-16 gmungocJAL-1705 xref ENST to correct (ENSP) accession id commit | commitdiff | tree | snapshot
2016-03-16 tcofoegbuJAL-2028 improvment to the displayed column customisation commit | commitdiff | tree | snapshot
2016-03-15 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... mungo_develop commit | commitdiff | tree | snapshot
2016-03-15 gmungocJAL-2016 corrected Javadoc, added test for anonymous... commit | commitdiff | tree | snapshot
2016-03-15 gmungocJAL-2016 FeatureSettingsI now FeatureSettingsModelI commit | commitdiff | tree | snapshot
2016-03-15 gmungocJAL-1705 code tidy/comment only commit | commitdiff | tree | snapshot
2016-03-15 gmungocJAL-1705 compute reverse complement of variants on... commit | commitdiff | tree | snapshot
2016-03-15 tcofoegbuJAL-1919 refined structure view annotation settings... commit | commitdiff | tree | snapshot
2016-03-11 tcofoegbuJAL-1478 Fixed ArrayIndexOutOfBoundsException while... commit | commitdiff | tree | snapshot
2016-03-11 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-03-11 tcofoegbuJAL-2026 Bug fix for best quality filter commit | commitdiff | tree | snapshot
2016-03-11 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... commit | commitdiff | tree | snapshot
2016-03-11 gmungocJAL-1270 unit test for SequenceIdMatcher.SeqIdName commit | commitdiff | tree | snapshot
2016-03-11 gmungocJAL-1705 check Retry-After response header commit | commitdiff | tree | snapshot
2016-03-11 gmungocJAL-1705 javadoc added only commit | commitdiff | tree | snapshot
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot commit | commitdiff | tree | snapshot
2016-03-11 tcofoegbuJAL-1818 reimplemented sequence and annotation processi... commit | commitdiff | tree | snapshot
2016-03-10 tcofoegbudevelop merge commit | commitdiff | tree | snapshot
2016-03-10 tcofoegbuJAL-2025 added code to stanitise query for structure... commit | commitdiff | tree | snapshot
2016-03-10 tcofoegbuJAL-2024 code to enforce case insensitivity for manual... commit | commitdiff | tree | snapshot
2016-03-07 gmungocJAL-2023 CDS sequences added to / share alignment dataset commit | commitdiff | tree | snapshot
2016-03-04 gmungocJAL-1705 EnsemblGenomes a top level db source commit | commitdiff | tree | snapshot
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