git://source.jalview.org
/
jalview.git
/ shortlog
commit
grep
author
committer
pickaxe
?
search:
re
summary
| shortlog |
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
jalview.git
2011-10-28
jprocter
JAL-885 - catch race condition when rna structure width...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-28
jprocter
JAL-969 - refactor initialisation of automatic annotati...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-28
jprocter
JAL-885 more efficient calculation and robust for misma...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-28
jprocter
(JAL-885 JAL-580) ignore invalid RNA structure lines
commit
|
commitdiff
|
tree
|
snapshot
2011-10-28
jprocter
JAL-902 structure conservation row for applet
commit
|
commitdiff
|
tree
|
snapshot
2011-10-28
jprocter
(JAL-970) interactive editing of RNA helix annotation...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-28
jprocter
(JAL-966) efficiency
commit
|
commitdiff
|
tree
|
snapshot
2011-10-28
jprocter
(JAL-889) ensure annotation row is revalidated after...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-28
jprocter
(JAL-885,JAL-580) structure consensus should only be...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-28
jprocter
(JAL-889) ensure latest version of RNA pairlist is...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-28
jprocter
JAL-580 - display position where wuss parsing error...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-28
jprocter
JAL-580 ensure WUSS annotation string is up to date...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-28
jprocter
use stack rather than vector and throw parse exceptions
commit
|
commitdiff
|
tree
|
snapshot
2011-10-28
jprocter
JAL-580 ensure WUSS annotation is reparsed if necessary...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-28
jprocter
NPE exception if annotation manually edited
commit
|
commitdiff
|
tree
|
snapshot
2011-10-28
jprocter
extend API
commit
|
commitdiff
|
tree
|
snapshot
2011-10-28
jprocter
refactor to use model API
commit
|
commitdiff
|
tree
|
snapshot
2011-10-28
jprocter
(JAL-963) refactor RNA helix helper class to schemes
commit
|
commitdiff
|
tree
|
snapshot
2011-10-27
jprocter
Merge branch 'refactor_aligcalcs' into develop
commit
|
commitdiff
|
tree
|
snapshot
2011-10-27
jprocter
(JAL-969) efficiency
commit
|
commitdiff
|
tree
|
snapshot
2011-10-27
jprocter
(JAL-969) fix logic bug introduced during refactoring
commit
|
commitdiff
|
tree
|
snapshot
2011-10-27
jprocter
(JAL-969) removed TODOs
commit
|
commitdiff
|
tree
|
snapshot
2011-10-27
jprocter
renamed menu entry to avoid field name clash
commit
|
commitdiff
|
tree
|
snapshot
2011-10-27
jprocter
(JAL-969) todo test re refactoring and possible change...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-27
jprocter
(JAL-969) refactored alignmentViewport base class to...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-27
jprocter
(JAL-961) refactored consensus and rna structure consen...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-27
jprocter
(JAL-961) use simplified notification logic to test...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-27
jprocter
(JAL-961) methods for checking calculation status
commit
|
commitdiff
|
tree
|
snapshot
2011-10-27
jprocter
(JAL-961) more calculation annotation and result object...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-27
jprocter
(JAL-967) ensure annotation panel is rendered with...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-21
jprocter
Refactored alignment viewport to use common base, exten...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-21
jprocter
new base class to hold core visualization settings...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-21
jprocter
todo
commit
|
commitdiff
|
tree
|
snapshot
2011-10-21
jprocter
static convenience methods for constructing and calcula...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-21
jprocter
use List rather than Vector
commit
|
commitdiff
|
tree
|
snapshot
2011-10-21
jprocter
extend alignPanel api with OOMHandler call to raise...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-21
jprocter
remove unnecessary import
commit
|
commitdiff
|
tree
|
snapshot
2011-10-21
jprocter
Introduced new AlignCalcWorker/manager interface.
commit
|
commitdiff
|
tree
|
snapshot
2011-10-21
jprocter
Merge branch 'Release_2_7_Branch_hotfix_JAL-962' into...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-21
jprocter
(JAL-965) new api methods to allow features to be loade...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-21
jprocter
(JAL-962) rejig parameter processing order so groups...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-21
jprocter
(JAL-962) allow group visibility to be specified before...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-20
jprocter
(JAL-963) jalviewLite RNA alignment example (reusing...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-18
jprocter
Merge branch 'logo_feature_JAL-958' into develop
commit
|
commitdiff
|
tree
|
snapshot
2011-10-18
jprocter
backout parts of the interface from another development...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-18
jprocter
Merge branch 'logo_feature_JAL-958' into develop
commit
|
commitdiff
|
tree
|
snapshot
2011-10-18
jprocter
(Jalview 3) refactored Graphics2D annotation rendering...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-17
jprocter
Merge branch 'logo_feature_JAL-958' into develop
commit
|
commitdiff
|
tree
|
snapshot
2011-10-17
jprocter
(ahem) new renderer package containing api and renderin...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-14
jprocter
Merge branch 'logo_feature_JAL-958' into develop
commit
|
commitdiff
|
tree
|
snapshot
2011-10-14
jprocter
(JAL-958) documented normalised sequence logo parameter
commit
|
commitdiff
|
tree
|
snapshot
2011-10-14
jprocter
(JAL-958) - normalised sequence logo for applet
commit
|
commitdiff
|
tree
|
snapshot
2011-10-11
jprocter
normalised logo rendering (JAL-958)
commit
|
commitdiff
|
tree
|
snapshot
2011-10-10
jprocter
(JAL-957) change splash screen and about to HTML text...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-10
jprocter
update author list in license for (JAL-826)
commit
|
commitdiff
|
tree
|
snapshot
2011-10-07
jprocter
merge Jan and Lauren's RNA GUI changes into develop...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-04
jprocter
Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-03
jprocter
Merge branch 'Release_2_7_Branch'
commit
|
commitdiff
|
tree
|
snapshot
2011-10-03
jprocter
redact previous commit - fileassociation tag not allowe...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-03
jprocter
removed unnecessary parameters and changed alignment...
commit
|
commitdiff
|
tree
|
snapshot
2011-10-03
jprocter
compile swingreader component for java 1.5 (JAL-948)
commit
|
commitdiff
|
tree
|
snapshot
2011-09-28
jprocter
Merge branch 'Release_2_7_Branch'
Release_2_7
commit
|
commitdiff
|
tree
|
snapshot
2011-09-28
jprocter
jnlps with and without file associations for default...
commit
|
commitdiff
|
tree
|
snapshot
2011-09-28
jprocter
broken link. rearranged opening pg
commit
|
commitdiff
|
tree
|
snapshot
2011-09-27
jprocter
typo
commit
|
commitdiff
|
tree
|
snapshot
2011-09-27
jprocter
switch to git release building
commit
|
commitdiff
|
tree
|
snapshot
2011-09-27
jprocter
patch name, reference and URL for Multi-Harmony : JAL-724
commit
|
commitdiff
|
tree
|
snapshot
2011-09-27
jprocter
ensure server errors return a URL and response document...
commit
|
commitdiff
|
tree
|
snapshot
2011-09-27
jprocter
use jalview properties preference to enable RSBS editor...
commit
|
commitdiff
|
tree
|
snapshot
2011-09-27
jprocter
same overzeaolous logic (JAL-915)
commit
|
commitdiff
|
tree
|
snapshot
2011-09-27
jprocter
start of Release 2.7
commit
|
commitdiff
|
tree
|
snapshot
2011-09-27
jprocter
JAL-944 - replaced stale PFAM links for 2.7 release...
commit
|
commitdiff
|
tree
|
snapshot
2011-09-27
jprocter
backout overzealous logic disabling feature links in...
commit
|
commitdiff
|
tree
|
snapshot
2011-09-27
jprocter
NPE fix
commit
|
commitdiff
|
tree
|
snapshot
2011-09-27
jprocter
apply version 2.7 copyright
commit
|
commitdiff
|
tree
|
snapshot
2011-09-26
jprocter
exclude build artefacts from repository
commit
|
commitdiff
|
tree
|
snapshot
2011-09-26
jprocter
updated documentation table of contents, menus and...
commit
|
commitdiff
|
tree
|
snapshot
2011-09-26
jprocter
documentation for news reader (JAL-943)
commit
|
commitdiff
|
tree
|
snapshot
2011-09-26
jprocter
tweak installer with IA2010 - fixes installerObjects...
commit
|
commitdiff
|
tree
|
snapshot
2011-09-26
jprocter
fix jar dependency in InstallAnywhere
commit
|
commitdiff
|
tree
|
snapshot
2011-09-26
jprocter
tidying classpath and fixing InstallAnywhere build
commit
|
commitdiff
|
tree
|
snapshot
2011-09-26
jprocter
tweaked dialog layout. should consider refactoring
commit
|
commitdiff
|
tree
|
snapshot
2011-09-26
jprocter
add new dependencies for 2.7 release
commit
|
commitdiff
|
tree
|
snapshot
2011-09-26
jprocter
make news window a modal dialog on the jalview desktop...
commit
|
commitdiff
|
tree
|
snapshot
2011-09-26
jprocter
avoid deprecation and ensure dialog close event is...
commit
|
commitdiff
|
tree
|
snapshot
2011-09-25
jprocter
organise imports
commit
|
commitdiff
|
tree
|
snapshot
2011-09-25
jprocter
more focus fixing (JAL-943)
commit
|
commitdiff
|
tree
|
snapshot
2011-09-25
jprocter
fix logic to ensure first check for news is correct...
commit
|
commitdiff
|
tree
|
snapshot
2011-09-23
jprocter
try even harder to get focus - for benefit of windows...
commit
|
commitdiff
|
tree
|
snapshot
2011-09-23
jprocter
ensure blog window gets put to front after dialogs...
commit
|
commitdiff
|
tree
|
snapshot
2011-09-23
jprocter
debugged example file again - old version had view...
commit
|
commitdiff
|
tree
|
snapshot
2011-09-22
jprocter
refactor and remove excess imports (JAL-943)
commit
|
commitdiff
|
tree
|
snapshot
2011-09-22
jprocter
jalview rss reader based on jswingreader (JAL-943)
commit
|
commitdiff
|
tree
|
snapshot
2011-09-20
jprocter
help documentation for Jalview 2.7
commit
|
commitdiff
|
tree
|
snapshot
2011-09-16
jprocter
JAL-747 - made warning message friendlier and more...
commit
|
commitdiff
|
tree
|
snapshot
2011-09-16
jprocter
fix for JAL-895 - new exampleFile_2_7.jar and logic...
commit
|
commitdiff
|
tree
|
snapshot
2011-09-16
jprocter
numerically ataxic comments.
commit
|
commitdiff
|
tree
|
snapshot
2011-09-16
jprocter
JAL-574 added option to enable/disable 'follow selectio...
commit
|
commitdiff
|
tree
|
snapshot
2011-09-16
jprocter
JAL-940 - removed legacy service options from preferenc...
commit
|
commitdiff
|
tree
|
snapshot
2011-09-16
jprocter
JAL-468 typo and label length in dialog
commit
|
commitdiff
|
tree
|
snapshot
next