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jalview.git
2019-06-17 gmungocJAL-3187 add sequence to feature details table (and... commit | commitdiff | tree | snapshot
2019-06-17 Jim ProcterJAL-3311 remove menus and documentation relating to... tasks/JAL-3311_removeVamsasMenu commit | commitdiff | tree | snapshot
2019-06-14 Ben SoaresJAL-3295 pre-merged code with JAL-3295 branch which... commit | commitdiff | tree | snapshot
2019-06-14 Ben SoaresJAL-3278 A system.out.println turned into a cache.log... commit | commitdiff | tree | snapshot
2019-06-14 Ben SoaresJAL-3300 instant Splash screen on getdown commit | commitdiff | tree | snapshot
2019-06-14 Ben SoaresJAL-3130 added a bit of gradle support for compiling... commit | commitdiff | tree | snapshot
2019-06-14 Jim ProcterMerge branch 'documentation/JAL-3111_release_211' into... commit | commitdiff | tree | snapshot
2019-06-14 Jim ProcterJAL-3111 release date now 20th June. more release note... commit | commitdiff | tree | snapshot
2019-06-14 Jim ProcterJAL-3111 report build type and commit in stdout from... commit | commitdiff | tree | snapshot
2019-06-14 Jim ProcterJAL-3299 JAL-3280 javadoc on BuildDetails bean commit | commitdiff | tree | snapshot
2019-06-14 Jim ProcterJAL-3111 report time when Jalview was built (consider... commit | commitdiff | tree | snapshot
2019-06-14 gmungocJAL-3302 transfer visible 'linked' features to Chimera commit | commitdiff | tree | snapshot
2019-06-13 Jalview Development... Merge branch 'releases/Release_2_11_Branch' into develop commit | commitdiff | tree | snapshot
2019-06-13 gmungocJAL-3303 ignore deletions when computing peptide variants commit | commitdiff | tree | snapshot
2019-06-13 Jim ProcterMerge branch 'bug/JAL-3295_CMD_select_not_working_in_se... commit | commitdiff | tree | snapshot
2019-06-13 gmungocJAL-3143 recognise lnc_RNA as transcript commit | commitdiff | tree | snapshot
2019-06-13 Ben SoaresJAL-3295 Can now compile/run/debug in Eclipse with... commit | commitdiff | tree | snapshot
2019-06-12 Ben SoaresJAL-3295 Fixed CMD-select of sequences in alignment... commit | commitdiff | tree | snapshot
2019-06-12 Ben SoaresJAL-3299 Fixed gitHash and gitBranch definitions in... commit | commitdiff | tree | snapshot
2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-06-11 gmungocJAL-3143 also parse "phase" from JSON response if present commit | commitdiff | tree | snapshot
2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-06-11 Ben SoaresMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2019-06-11 Ben SoaresJAL-3248 improved pandoc lookup. Now comma-separated... commit | commitdiff | tree | snapshot
2019-06-11 gmungocJAL-3111 update release date placeholder commit | commitdiff | tree | snapshot
2019-06-11 gmungocJAL-3288 fixes for gain/lose focus commit | commitdiff | tree | snapshot
2019-06-11 gmungocJAL-3187 CDS has same dataset sequence as transcript commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresJAL-3248 quick fix for build.gradle when pandoc not... commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresJAL-3248 building.html now generated by pandoc 'brew... commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresJAL-3248 added conversion of building.md to building... commit | commitdiff | tree | snapshot
2019-06-10 tvaJAL-3297 pad gaps in alignment to ensure hmmalign runs commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresMerge branch 'develop' into task/JAL-3248_rewritten_bui... commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresMerge branch 'task/JAL-3248_rewritten_building_md_instr... commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresJAL-3248 Building from source documentation in markdown... commit | commitdiff | tree | snapshot
2019-06-10 Ben SoaresJAL-3248 Building from source documentation in markdown... commit | commitdiff | tree | snapshot
2019-06-07 Ben SoaresJAL-3248 Almost completed building doc commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-3187 save and restore flags for show complement... commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-3187 change fields to local variables commit | commitdiff | tree | snapshot
2019-06-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-06-07 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into... commit | commitdiff | tree | snapshot
2019-06-07 tvaJAL-3291 issue fixed, passing tests added commit | commitdiff | tree | snapshot
2019-06-07 Ben SoaresJAL-3248 a bit more commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-3187 Viewport schema attributes for showComplementF... commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-3251 added optional attributes Sequence.biotype... commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-2738 use GeneLocus extends DBRefEntry to hold chrom... commit | commitdiff | tree | snapshot
2019-06-07 Ben SoaresMerge branch 'develop' into task/JAL-3248_rewritten_bui... commit | commitdiff | tree | snapshot
2019-06-07 Ben SoaresJAL-3225 removing slightly misleading rewrite of .class... commit | commitdiff | tree | snapshot
2019-06-07 tvaJAL-3285 fix errors in tests introduced by merge commit | commitdiff | tree | snapshot
2019-06-06 tvaJAL-3285 build Jalview XML file for current version commit | commitdiff | tree | snapshot
2019-06-06 tvaJAL-3285 fix incorrect file paths on HMMAlign/Search... commit | commitdiff | tree | snapshot
2019-06-06 Ben SoaresJAL-3225 Classpath now made in eclipse.classpath.file... commit | commitdiff | tree | snapshot
2019-06-06 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into... commit | commitdiff | tree | snapshot
2019-06-06 gmungocJAL-3187 deletions (of Castor code) after merge from... commit | commitdiff | tree | snapshot
2019-06-06 gmungocMerge branch 'develop' into trialMerge commit | commitdiff | tree | snapshot
2019-06-06 gmungocJAL-3187 commit to enable merge from develop commit | commitdiff | tree | snapshot
2019-06-06 tvaJAL-3285 add Cygwin environment path fix for Windows commit | commitdiff | tree | snapshot
2019-06-06 tvaJAL-3285 code changes to HMMER colour schemes not inclu... commit | commitdiff | tree | snapshot
2019-06-06 tvaJAL-3285 fix FileLoader failing to load HMMER file commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 method call change tin Information to match... commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 delete duplicate variables in AlignmentViewpor... commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 method call change to HMMBuild not included... commit | commitdiff | tree | snapshot
2019-06-05 gmungocJAL-3288 override JInternalFrame.setSelected() to avoid... bug/JAL-3288splitFrameMenusJava11 commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 method call change in SeqPanel to match develop commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 change method declaration in AAFrequency to... commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 changed method call on AnnotationRenderer... commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 code changes to Jalview2XML not included in... commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 add unmerged code to AlignmentAnnotation commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 method call name change to SeqPanel not includ... commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 method call name change in OverviewPanel not... commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 small method call name change to AnnotationLabels commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 add unmerged code to SequenceGroup commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 small method call name change missed in Consen... commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 small code changes to ConsensusThread not... commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 small code changes to AnnotationRenderer not... commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 code changes to AnnotationLabels not included... commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 add unmerged features to AlignViewportI commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 add unmerged features to AlignViewport commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 add unmerged features into AlignmentViewport commit | commitdiff | tree | snapshot
2019-06-05 tvaJAL-3285 add methods and small changes to StockholmFile... commit | commitdiff | tree | snapshot
2019-06-04 Jim ProcterMerge branch 'develop' into developtomchmmer commit | commitdiff | tree | snapshot
2019-06-04 gmungocJAL-2386 avoid duplicate pdbids in free text query bug/JAL-3286duplicatePdbQuery commit | commitdiff | tree | snapshot
2019-06-04 Ben SoaresJAL-3287 correct local file URI for appbase and getdown... commit | commitdiff | tree | snapshot
2019-06-04 Ben SoaresJAL-3287 adjustment to HelpLinksChecker commit | commitdiff | tree | snapshot
2019-06-04 Ben SoaresJAL-3287 adjustment to HelpLinksChecker to run in Windo... commit | commitdiff | tree | snapshot
2019-06-04 Ben SoaresJAL-3248 small edits commit | commitdiff | tree | snapshot
2019-05-31 Ben SoaresJAL-3247 Adjusted Uninstall Old Jalview.app to just... commit | commitdiff | tree | snapshot
2019-05-31 Ben SoaresJAL-3248 extra tl;dr commit | commitdiff | tree | snapshot
2019-05-30 Ben SoaresJAL-3248 Essential tl;dr :) commit | commitdiff | tree | snapshot
2019-05-30 Ben SoaresMerge branch 'develop' into task/JAL-3248_rewritten_bui... commit | commitdiff | tree | snapshot
2019-05-29 gmungocJAL-2738 error logging if no ##reference found commit | commitdiff | tree | snapshot
2019-05-29 gmungocJAL-2738 accept .csi, default to GRCh37:homo_sapiens... commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresJAL-3277 Fixed getdown splashscreen. For unknown reason... commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresJAL-1988 Some TEST code accidentally left in now remove... commit | commitdiff | tree | snapshot
2019-05-28 Jalview Development... Merge branch 'develop' into releases/Release_2_11_Branch commit | commitdiff | tree | snapshot
2019-05-28 Jalview Development... JAL-3247 sign the AppleScript uninstaller commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresJAL-3141 deleted TODO comment in Messages_es commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresMerge branch 'develop' into task/JAL-3141_JAL-3247_merge commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresJAL-3248 saving commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresJAL-3141 Added HashMap types for Java 1.8 compatibility commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresMerge branch 'task/JAL-3141_Customise_checkbox' into... commit | commitdiff | tree | snapshot
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