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jalview.git
2023-02-20 Ben SoaresMerge branch 'develop' into bug/JAL-4125_flatlaf_quitha... bug/JAL-4125_flatlaf_quithandler_warning_doesnt_display_properly commit | commitdiff | tree | snapshot
2023-02-16 James ProcterJAL-1713 don’t close an automatically created overview... commit | commitdiff | tree | snapshot
2023-02-15 James ProcterMerge branch 'develop' into feature/JAL-1713_overviewIn... commit | commitdiff | tree | snapshot
2023-02-15 James ProcterPassing test for JAL-4127 failing on the JAL-1713 branch commit | commitdiff | tree | snapshot
2023-02-15 James ProcterJAL-4090 move 2.11.3 series release notes to 2.11.3... commit | commitdiff | tree | snapshot
2023-02-13 Ben SoaresMerge branch 'develop' into bug/JAL-4125_flatlaf_quitha... commit | commitdiff | tree | snapshot
2023-02-13 Ben SoaresJAL-4125 Spanish translations commit | commitdiff | tree | snapshot
2023-02-13 Ben SoaresMerge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL... commit | commitdiff | tree | snapshot
2023-02-13 Ben SoaresJAL-4125 Move confirmation of closing external viewer... commit | commitdiff | tree | snapshot
2023-02-13 James ProcterMerge branch 'develop' into feature/JAL-1713_overviewIn... commit | commitdiff | tree | snapshot
2023-02-10 James ProcterJAL-3077 broken conflict resolve resulted in failing... commit | commitdiff | tree | snapshot
2023-02-10 James ProcterFix for JAL-4126 - don’t automatically create a thresho... commit | commitdiff | tree | snapshot
2023-02-10 James ProcterJAL-4126 comment out closeAll - so we can visually... commit | commitdiff | tree | snapshot
2023-02-10 James ProcterJAL-4126 failing test - colour scheme appears to be... commit | commitdiff | tree | snapshot
2023-02-09 Ben SoaresJAL-4125 Additions to JvOptionPane and QuitHandler... commit | commitdiff | tree | snapshot
2023-02-03 James ProcterJAL-1551 remove temp file in src commit | commitdiff | tree | snapshot
2023-02-03 James ProcterMerge branch 'develop' into features/r2_11_2_alphafold... commit | commitdiff | tree | snapshot
2023-01-31 James ProcterJAL-1713 update from Jalview 2.11.3 develop commit | commitdiff | tree | snapshot
2023-01-30 Ben SoaresJAL-1988 Make sensible choices if only the opening... merge/JAL-1988_JAL-3772+JAL-3416+JAL-4054+JAL-4064 commit | commitdiff | tree | snapshot
2023-01-26 Ben SoaresJAL-4118 remove unnecessary sleep from QuitHandlerTest commit | commitdiff | tree | snapshot
2023-01-26 Ben SoaresJAL-4118 fix a small buglet in BackupFiles exhibited... commit | commitdiff | tree | snapshot
2023-01-26 Ben SoaresJAL-1988 Add a sleep to file save test to give time... commit | commitdiff | tree | snapshot
2023-01-25 James ProcterJAL-4116 relegate the failed to promote warning to... commit | commitdiff | tree | snapshot
2023-01-25 James ProcterMerge branch 'new_feature/JAL-4019_ambiguous_base_colou... commit | commitdiff | tree | snapshot
2023-01-24 James ProcterJAL-4090 Release 2.11.3.0 release notes and version... commit | commitdiff | tree | snapshot
2023-01-24 James ProcterMerge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL... commit | commitdiff | tree | snapshot
2023-01-24 James ProcterMerge branch 'develop' (JAL-4102 2.11.2.6 patch release... features/r2_11_2_alphafold/JAL-2349_JAL-3855 commit | commitdiff | tree | snapshot
2023-01-23 James ProcterJAL-4104 JAL-4102 update help docs with script to add... Release_2_11_2_6 commit | commitdiff | tree | snapshot
2023-01-23 Jim ProcterJAL-4102 whatsNew for 2.11.2.6 commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterMerge branch 'patch/JAL-4114_updated_3dbeacons_api... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 model_page_url not required in v2.0 response patch/JAL-4114_updated_3dbeacons_api commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4102 update date and release notes for 2.11.2.6 commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterMerge branch 'patch/JAL-4114_updated_3dbeacons_api... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterMerge branch 'patch/Release_2_11_2_6_Branch' into develop commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-2353 primary ref candidates that should be promoted... patch/Release_2_11_2_6_Branch commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 missing mock server response commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 only rank model qualities that are computed... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 alphafold now marked as AB-INITIO so adjust... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 additional warnings when PDBe doesn’t return... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 patch REST client for changed JSON schema... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 formatting commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 updated mock tests and responses for v2.0 api commit | commitdiff | tree | snapshot
2023-01-17 Ben SoaresJAL-3416 No longer needed commit | commitdiff | tree | snapshot
2023-01-17 Ben SoaresMerge branch 'develop' into merge/JAL-1988_JAL-3772... commit | commitdiff | tree | snapshot
2023-01-16 Ben SoaresJAL-3416 More tweaking of FlatLaf. Problem with macOS... commit | commitdiff | tree | snapshot
2023-01-11 Ben SoaresJAL-1988 JAL-3772 Mark the _default_ STARTUP_FILE as... commit | commitdiff | tree | snapshot
2023-01-06 Ben SoaresJAL-3416 More explicit setting of FlatLaf macOS theme commit | commitdiff | tree | snapshot
2023-01-06 Ben SoaresJAL-3416 Upgraded FlatLaf to 3.0 and added macOS theme... commit | commitdiff | tree | snapshot
2023-01-06 Ben SoaresJAL-3416 remove a missed panel titlebar icon in TreePanel commit | commitdiff | tree | snapshot
2023-01-06 Ben SoaresJAL-3416 Fix file permissions on bundled macOS JREs commit | commitdiff | tree | snapshot
2022-11-30 Jim ProcterJAL-4102 bump version number commit | commitdiff | tree | snapshot
2022-11-30 Jim ProcterJAL-4102 2.11.2.6 hotfix release notes - JAL-4101 JAL... commit | commitdiff | tree | snapshot
2022-11-30 Ben SoaresJAL-4101 Updated Rfam* tests commit | commitdiff | tree | snapshot
2022-11-30 Ben SoaresJAL-4101 Updated DEFAULT_RFAM_BASEURL commit | commitdiff | tree | snapshot
2022-11-30 Jim ProcterJAL-2353 patch for Ensembl refs from uniprot - needs... commit | commitdiff | tree | snapshot
2022-11-29 Ben SoaresJAL-4101 Updated Rfam* tests commit | commitdiff | tree | snapshot
2022-11-29 Ben SoaresJAL-4101 Updated DEFAULT_RFAM_BASEURL commit | commitdiff | tree | snapshot
2022-11-17 Ben SoaresJAL-4019 Clarification of position on 'X' in help text commit | commitdiff | tree | snapshot
2022-11-16 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG... commit | commitdiff | tree | snapshot
2022-11-16 Ben SoaresJAL-3416 make flatlaf default for linux improvement/JAL-3416_default_to_LIVE_DRAG_MODE_for_flatlaf commit | commitdiff | tree | snapshot
2022-11-16 Ben SoaresJAL-4019 finalised a boolean option and tidied some... commit | commitdiff | tree | snapshot
2022-11-14 Ben SoaresJAL-4019 Put original test back commit | commitdiff | tree | snapshot
2022-11-14 Ben SoaresJAL-4019 Make diagnostic message debug level commit | commitdiff | tree | snapshot
2022-11-13 Ben SoaresJAL-4019 small colour fix for X in the documentation commit | commitdiff | tree | snapshot
2022-11-13 Ben SoaresJAL-4019 attribution to Suzanne commit | commitdiff | tree | snapshot
2022-11-13 Ben SoaresJAL-4019 Help pages for Nucleotide Ambiguity colour... commit | commitdiff | tree | snapshot
2022-11-13 Ben SoaresJAL-4019 small but important corrections to array order... commit | commitdiff | tree | snapshot
2022-11-13 Ben SoaresJAL-4019 Added tests for new Nucleotide sequence detection commit | commitdiff | tree | snapshot
2022-11-13 Ben SoaresJAL-4019 improvement to short sequence nucleotide detec... commit | commitdiff | tree | snapshot
2022-11-10 Ben SoaresJAL-4019 Nucleotide Ambiguity Colour Scheme added.... commit | commitdiff | tree | snapshot
2022-11-09 Ben SoaresJAL-3416 Add necessary logo to non-internal Frames commit | commitdiff | tree | snapshot
2022-11-09 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG... commit | commitdiff | tree | snapshot
2022-11-09 Ben SoaresJAL-3416 Add necessary logo to non-internal Frames commit | commitdiff | tree | snapshot
2022-11-09 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG... commit | commitdiff | tree | snapshot
2022-11-09 Ben SoaresJAL-3416 Remove all JFrame/JInternalFrame icons (set... commit | commitdiff | tree | snapshot
2022-11-09 Ben SoaresMerge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl... commit | commitdiff | tree | snapshot
2022-11-09 Ben SoaresJAL-1988 JAL-3772 Test for FORCE_QUIT whilst saving... bug/JAL-1988_JAL-3772_improved_quit_handling commit | commitdiff | tree | snapshot
2022-11-08 Ben SoaresMerge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl... commit | commitdiff | tree | snapshot
2022-11-08 Ben SoaresJAL-1988 JAL-3776 Formatting JvOptionPane commit | commitdiff | tree | snapshot
2022-11-08 Ben SoaresJAL-1988 JAL-3772 Tests for various quitting scenarios commit | commitdiff | tree | snapshot
2022-11-08 Ben SoaresJAL-1988 JAL-3772 Fixes highlighted by tests commit | commitdiff | tree | snapshot
2022-11-04 Ben SoaresMerge branch 'merge/JAL-4054+JAL-4064' into ben-big... commit | commitdiff | tree | snapshot
2022-11-04 Ben SoaresJAL-3416 Added logoIcon to quit (and potentially other... commit | commitdiff | tree | snapshot
2022-11-04 Ben SoaresJAL-1998 JAL-3772 JAL-3416 Merge conflict resolution... commit | commitdiff | tree | snapshot
2022-11-04 Ben SoaresJAL-4064 JAL-4054 Combined install4j10 template with... improvement/JAL-4064_Addition_of_macOS_AARCH64_native_DMG commit | commitdiff | tree | snapshot
2022-11-04 Ben SoaresJAL-4054 Altered file association templates and generat... commit | commitdiff | tree | snapshot
2022-11-03 Ben SoaresJAL-3416 File Chooser iconified, JvOptionPanes iconifie... commit | commitdiff | tree | snapshot
2022-11-03 Jim ProcterJAL-3855 JAL-4095 simple picking of ranges adjacent... commit | commitdiff | tree | snapshot
2022-11-03 Ben SoaresJAL-1988 JAL-3772 Allow other window closing dialogs... commit | commitdiff | tree | snapshot
2022-11-03 Ben SoaresJAL-3416 More JInternalFrame icons commit | commitdiff | tree | snapshot
2022-11-03 Ben SoaresJAL-1988 JAL-3772 Tidying of unspecified Callable decla... commit | commitdiff | tree | snapshot
2022-11-03 Ben SoaresJAL-3416 Start to add JInternalFrame icons (to replace... commit | commitdiff | tree | snapshot
2022-11-02 Ben SoaresJAL-1988 JAL-3772 Moving packages to somewhere more... commit | commitdiff | tree | snapshot
2022-11-01 Ben SoaresJAL-3416 set flatlaf default drag mode to LIVE_DRAG_MODE commit | commitdiff | tree | snapshot
2022-11-01 Ben SoaresJAL-1988 JAL-3772 Change default alignmentviewport... commit | commitdiff | tree | snapshot
2022-11-01 Ben SoaresJAL-4064 tidying build.gradle commit | commitdiff | tree | snapshot
2022-11-01 Ben SoaresJAL-4064 re-added bundled macOS JREs as Filesets, which... commit | commitdiff | tree | snapshot
2022-11-01 Ben SoaresJAL-4064 Cleaned up file sets in install4j template... commit | commitdiff | tree | snapshot
2022-11-01 Ben SoaresJAL-4064 Download JRE/JDKs from Azul if not os/arch... commit | commitdiff | tree | snapshot
2022-10-30 Jim ProcterJAL-2349 JAL-3855 bizarre resizing exception when resiz... commit | commitdiff | tree | snapshot
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