JAL-1620 version bump and release notes
[jalview.git] / help / html / misc / aminoAcids.html
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22 <head><title>Amino Acids</title>
23 <style type="text/css">
24 <!--
25 td {
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30 </style>
31 </head>
32
33 <body>
34
35
36 <div align="center">
37   <table width="450" BORDER ="1" cellpadding="3" BGCOLOR="#FFFFFF">
38     <tr> 
39       <td width="15">A</td>
40       <td width="25">Ala</td>
41       <td width="90">Alanine</td>
42       <td width="80">aliphatic<br>
43         hydrophobic<br>
44         neutral </td>
45       <td width="43" valign="middle">GCT<br>
46         GCC<br>
47         GCA<br>
48         GCG</td>
49       <td width="125"><img src="ala.jpg" width="94" height="81"></td>
50     </tr>
51     <tr> 
52       <td>B</td>
53       <td>&nbsp;</td>
54       <td>either aspartic acid or asparagine</td>
55       <td>&nbsp;</td>
56       <td>&nbsp;</td>
57       <td>&nbsp;</td>
58     </tr>
59     <tr> 
60       <td>C</td>
61       <td>Cys</td>
62       <td>Cysteine</td>
63       <td>polar<br>
64         hydrophobic<br>
65         neutral </td>
66       <td>TGT<br>
67         TGC</td>
68       <td><img src="cys.jpg" width="82" height="95"></td>
69     </tr>
70     <tr> 
71       <td>D</td>
72       <td>Asp</td>
73       <td>Aspartic Acid</td>
74       <td>polar<br>
75         hydrophilic<br>
76         charged (-) </td>
77       <td>GAT<br>
78         GAC</td>
79       <td><img src="aspartate.jpg" width="95" height="103"></td>
80     </tr>
81     <tr> 
82       <td>E</td>
83       <td>Glu</td>
84       <td>Glutamic Acid</td>
85       <td>polar<br>
86         hydrophilic<br>
87         charged (-) </td>
88       <td>GAA<br>
89         GAG</td>
90       <td><img src="glutamate.jpg" width="93" height="128"></td>
91     </tr>
92     <tr> 
93       <td>F</td>
94       <td>Phe</td>
95       <td>Phenylalanine</td>
96       <td>aromatic<br>
97         hydrophobic<br>
98         neutral</td>
99       <td>TTT<br>
100         TTC</td>
101       <td><img src="phe.jpg" width="87" height="134"></td>
102     </tr>
103     <tr> 
104       <td>G</td>
105       <td>Gly</td>
106       <td>Glycine</td>
107       <td>&nbsp;</td>
108       <td>GGT<br>
109         GGC<br>
110         GGA<br>
111         GGG</td>
112       <td><img src="gly.jpg" width="97" height="79"></td>
113     </tr>
114     <tr> 
115       <td>H</td>
116       <td>His</td>
117       <td>Histidine</td>
118       <td>aromatic<br>
119         polar<br>
120         hydrophilic<br>
121         charged (+) </td>
122       <td>CAT<br>
123         CAC</td>
124       <td><img src="his.jpg" width="97" height="142"></td>
125     </tr>
126     <tr> 
127       <td>I</td>
128       <td>Ile</td>
129       <td>Isoleucine</td>
130       <td>aliphatic<br>
131         hydrophobic<br>
132         neutral </td>
133       <td>ATT<br>
134         ATC<br>
135         ATA</td>
136       <td><img src="iso.jpg" width="101" height="125"></td>
137     </tr>
138     <tr> 
139       <td>K</td>
140       <td>Lys</td>
141       <td>Lysine</td>
142       <td>&nbsp;</td>
143       <td>AAA<br>
144         AAG</td>
145       <td><img src="lys.jpg" width="79" height="167"></td>
146     </tr>
147     <tr> 
148       <td>L</td>
149       <td>Leu</td>
150       <td>Leucine</td>
151       <td>aliphatic<br>
152         hydrophobic<br>
153         neutral </td>
154       <td>TTG<br>
155         TTA<br>
156         CTT<br>
157         CTC<br>
158         CTA<br>
159         CTG</td>
160       <td><img src="leu.jpg" width="97" height="120"></td>
161     </tr>
162     <tr> 
163       <td>M</td>
164       <td>Met</td>
165       <td>Methionine</td>
166       <td>hydrophobic<br>
167         neutral </td>
168       <td>ATG</td>
169       <td><img src="met.jpg" width="86" height="151"></td>
170     </tr>
171     <tr> 
172       <td>N</td>
173       <td>Asn</td>
174       <td>Asparagine</td>
175       <td>polar<br>
176         hydrophilic<br>
177         neutral </td>
178       <td>AAT<br>
179         AAC</td>
180       <td><img src="asparagine.jpg" width="84" height="116"></td>
181     </tr>
182     <tr> 
183       <td>P</td>
184       <td>Pro</td>
185       <td>Proline</td>
186       <td>hydrophobic<br>
187         neutral</td>
188       <td>CCT<br>
189         CCC<br>
190         CCA<br>
191         CCG</td>
192       <td><img src="pro.jpg" width="101" height="90"></td>
193     </tr>
194     <tr> 
195       <td>Q</td>
196       <td>Gln</td>
197       <td>Glutamine</td>
198       <td>polar<br>
199         hydrophilic<br>
200         neutral</td>
201       <td>CAA<br>
202         CAG</td>
203       <td><img src="glutamine.jpg" width="81" height="137"></td>
204     </tr>
205     <tr> 
206       <td>R</td>
207       <td>Arg</td>
208       <td>Arginine</td>
209       <td>polar<br>
210         hydrophilic<br>
211         charged (+) </td>
212       <td>CGT<br>
213         CGC<br>
214         CGA<br>
215         CGG<br>
216         AGA<br>
217         AGG</td>
218       <td><img src="arg.jpg" width="95" height="187"></td>
219     </tr>
220     <tr> 
221       <td>S</td>
222       <td>Ser</td>
223       <td>Serine</td>
224       <td>polar<br>
225         hydrophilic<br>
226         neutral </td>
227       <td>TCT<br>
228         TCC<br>
229         TCA<br>
230         TCG<br>
231         AGT<br>
232         AGC</td>
233       <td><img src="ser.jpg" width="96" height="74"></td>
234     </tr>
235     <tr> 
236       <td>T</td>
237       <td>Thr</td>
238       <td>Threonine</td>
239       <td>polar<br>
240         hydrophilic<br>
241         neutral </td>
242       <td>ACT<br>
243         ACC<br>
244         ACA<br>
245         ACG</td>
246       <td><img src="thr.jpg" width="94" height="96"></td>
247     </tr>
248     <tr> 
249       <td>V</td>
250       <td>Val</td>
251       <td>Valine</td>
252       <td>aliphatic<br>
253         hydrophobic<br>
254         neutral </td>
255       <td>GTT<br>
256         GTC<br>
257         GTA<br>
258         GTG</td>
259       <td><img src="val.jpg" width="99" height="98"></td>
260     </tr>
261     <tr> 
262       <td>W</td>
263       <td>Trp</td>
264       <td>Tryptophan</td>
265       <td>aromatic<br>
266         hydrophobic<br>
267         neutral</td>
268       <td>TGG</td>
269       <td><img src="tryp.jpg" width="106" height="173"></td>
270     </tr>
271     <tr> 
272       <td>X</td>
273       <td>&nbsp;</td>
274       <td>UNKNOWN</td>
275       <td>&nbsp;</td>
276       <td>&nbsp;</td>
277       <td>&nbsp;</td>
278     </tr>
279     <tr> 
280       <td>Y</td>
281       <td>Tyr</td>
282       <td>Tyrosine</td>
283       <td>aromatic<br>
284         polar<br>
285         hydrophobic </td>
286       <td>TAT<br>
287         TAC</td>
288       <td><img src="tyr.jpg" width="85" height="152"></td>
289     </tr>
290     <tr> 
291       <td>Z</td>
292       <td>&nbsp;</td>
293       <td>either glutamic acid or glutamine</td>
294       <td>&nbsp;</td>
295       <td>&nbsp;</td>
296       <td>&nbsp;</td>
297     </tr>
298     <tr> 
299       <td>&nbsp;</td>
300       <td>End</td>
301       <td>Terminator</td>
302       <td>&nbsp;</td>
303       <td>TAA<br>
304         TAG<br>
305         TGA</td>
306       <td>&nbsp;</td>
307     </tr>
308   </table>
309   </div>
310 </body>
311 </html>