src/jalview/jbgui/GStructureViewer.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
   3  * Copyright (C) 2014 The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  10  *
  11  * Jalview is distributed in the hope that it will be useful, but
  12  * WITHOUT ANY WARRANTY; without even the implied warranty
  13  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  14  * PURPOSE.  See the GNU General Public License for more details.
  15  *
  16  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  17  * The Jalview Authors are detailed in the 'AUTHORS' file.
  18  */
  19 package jalview.jbgui;
  20
  21 import jalview.util.MessageManager;
  22
  23 import javax.swing.*;
  24 import java.awt.event.ActionListener;
  25 import java.awt.event.ActionEvent;
  26
  27 public class GStructureViewer extends JInternalFrame
  28 {
  29   public GStructureViewer()
  30   {
  31     try
  32     {
  33       jbInit();
  34     } catch (Exception ex)
  35     {
  36       ex.printStackTrace();
  37     }
  38   }
  39
  40   private void jbInit() throws Exception
  41   {
  42     this.setJMenuBar(menuBar);
  43     fileMenu.setText(MessageManager.getString("action.file"));
  44     savemenu.setActionCommand(MessageManager.getString("action.save_image"));
  45     savemenu.setText(MessageManager.getString("action.save_as"));
  46     pdbFile.setText(MessageManager.getString("label.pdb_file"));
  47     pdbFile.addActionListener(new ActionListener()
  48     {
  49       public void actionPerformed(ActionEvent actionEvent)
  50       {
  51         pdbFile_actionPerformed(actionEvent);
  52       }
  53     });
  54     png.setText("PNG");
  55     png.addActionListener(new ActionListener()
  56     {
  57       public void actionPerformed(ActionEvent actionEvent)
  58       {
  59         png_actionPerformed(actionEvent);
  60       }
  61     });
  62     eps.setText("EPS");
  63     eps.addActionListener(new ActionListener()
  64     {
  65       public void actionPerformed(ActionEvent actionEvent)
  66       {
  67         eps_actionPerformed(actionEvent);
  68       }
  69     });
  70     viewMapping.setText(MessageManager.getString("label.view_mapping"));
  71     viewMapping.addActionListener(new ActionListener()
  72     {
  73       public void actionPerformed(ActionEvent actionEvent)
  74       {
  75         viewMapping_actionPerformed(actionEvent);
  76       }
  77     });
  78     viewMenu.setText(MessageManager.getString("action.view"));
  79     chainMenu.setText(MessageManager.getString("action.show_chain"));
  80     colourMenu.setText(MessageManager.getString("label.colours"));
  81     backGround.setText(MessageManager.getString("label.background_colour") + "...");
  82     backGround.addActionListener(new ActionListener()
  83     {
  84       public void actionPerformed(ActionEvent actionEvent)
  85       {
  86         backGround_actionPerformed(actionEvent);
  87       }
  88     });
  89     seqColour.setSelected(false);
  90     seqColour.setText(MessageManager.getString("action.by_sequence"));
  91     seqColour.addActionListener(new ActionListener()
  92     {
  93       public void actionPerformed(ActionEvent actionEvent)
  94       {
  95         seqColour_actionPerformed(actionEvent);
  96       }
  97     });
  98     chainColour.setText(MessageManager.getString("action.by_chain"));
  99     chainColour.addActionListener(new ActionListener()
 100     {
 101       public void actionPerformed(ActionEvent actionEvent)
 102       {
 103         chainColour_actionPerformed(actionEvent);
 104       }
 105     });
 106     chargeColour.setText(MessageManager.getString("label.charge_cysteine"));
 107     chargeColour.addActionListener(new ActionListener()
 108     {
 109       public void actionPerformed(ActionEvent actionEvent)
 110       {
 111         chargeColour_actionPerformed(actionEvent);
 112       }
 113     });
 114     zappoColour.setText(MessageManager.getString("label.zappo"));
 115     zappoColour.addActionListener(new ActionListener()
 116     {
 117       public void actionPerformed(ActionEvent actionEvent)
 118       {
 119         zappoColour_actionPerformed(actionEvent);
 120       }
 121     });
 122     taylorColour.setText(MessageManager.getString("label.taylor"));
 123     taylorColour.addActionListener(new ActionListener()
 124     {
 125       public void actionPerformed(ActionEvent actionEvent)
 126       {
 127         taylorColour_actionPerformed(actionEvent);
 128       }
 129     });
 130     hydroColour.setText(MessageManager.getString("label.hydrophobicity"));
 131     hydroColour.addActionListener(new ActionListener()
 132     {
 133       public void actionPerformed(ActionEvent actionEvent)
 134       {
 135         hydroColour_actionPerformed(actionEvent);
 136       }
 137     });
 138     strandColour.setText(MessageManager.getString("label.strand_propensity"));
 139     strandColour.addActionListener(new ActionListener()
 140     {
 141       public void actionPerformed(ActionEvent actionEvent)
 142       {
 143         strandColour_actionPerformed(actionEvent);
 144       }
 145     });
 146     helixColour.setText(MessageManager.getString("label.helix_propensity"));
 147     helixColour.addActionListener(new ActionListener()
 148     {
 149       public void actionPerformed(ActionEvent actionEvent)
 150       {
 151         helixColour_actionPerformed(actionEvent);
 152       }
 153     });
 154     turnColour.setText(MessageManager.getString("label.turn_propensity"));
 155     turnColour.addActionListener(new ActionListener()
 156     {
 157       public void actionPerformed(ActionEvent actionEvent)
 158       {
 159         turnColour_actionPerformed(actionEvent);
 160       }
 161     });
 162     buriedColour.setText(MessageManager.getString("label.buried_index"));
 163     buriedColour.addActionListener(new ActionListener()
 164     {
 165       public void actionPerformed(ActionEvent actionEvent)
 166       {
 167         buriedColour_actionPerformed(actionEvent);
 168       }
 169     });
 170     purinePyrimidineColour.setText(MessageManager.getString("label.purine_pyrimidine"));
 171     purinePyrimidineColour.addActionListener(new ActionListener()
 172     {
 173       public void actionPerformed(ActionEvent actionEvent)
 174       {
 175         purinePyrimidineColour_actionPerformed(actionEvent);
 176       }
 177     });
 178
 179     userColour.setText(MessageManager.getString("action.user_defined"));
 180     userColour.addActionListener(new ActionListener()
 181     {
 182       public void actionPerformed(ActionEvent actionEvent)
 183       {
 184         userColour_actionPerformed(actionEvent);
 185       }
 186     });
 187     jmolColour.setSelected(false);
 188     jmolColour.setText(MessageManager.getString("label.colour_with_jmol"));
 189     jmolColour.setToolTipText(MessageManager.getString("label.let_jmol_manage_structure_colours"));
 190     jmolColour.addActionListener(new ActionListener()
 191     {
 192       public void actionPerformed(ActionEvent actionEvent)
 193       {
 194         jmolColour_actionPerformed(actionEvent);
 195       }
 196     });
 197     helpMenu.setText(MessageManager.getString("action.help"));
 198     jmolHelp.setText(MessageManager.getString("label.jmol_help"));
 199     jmolHelp.addActionListener(new ActionListener()
 200     {
 201       public void actionPerformed(ActionEvent actionEvent)
 202       {
 203         jmolHelp_actionPerformed(actionEvent);
 204       }
 205     });
 206     alignStructs.setText(MessageManager.getString("label.align_structures"));
 207     alignStructs.addActionListener(new ActionListener()
 208     {
 209       public void actionPerformed(ActionEvent actionEvent)
 210       {
 211         alignStructs_actionPerformed(actionEvent);
 212       }
 213     });
 214     jmolActionMenu.setText(MessageManager.getString("label.jmol"));
 215     menuBar.add(fileMenu);
 216     menuBar.add(viewMenu);
 217     menuBar.add(colourMenu);
 218     menuBar.add(jmolActionMenu);
 219     jmolActionMenu.setVisible(false);
 220     menuBar.add(helpMenu);
 221     fileMenu.add(savemenu);
 222     fileMenu.add(viewMapping);
 223     savemenu.add(pdbFile);
 224     savemenu.add(png);
 225     savemenu.add(eps);
 226     viewMenu.add(chainMenu);
 227
 228     colourMenu.add(seqColour);
 229     colourMenu.add(chainColour);
 230     colourMenu.add(chargeColour);
 231     colourMenu.add(zappoColour);
 232     colourMenu.add(taylorColour);
 233     colourMenu.add(hydroColour);
 234     colourMenu.add(helixColour);
 235     colourMenu.add(strandColour);
 236     colourMenu.add(turnColour);
 237     colourMenu.add(buriedColour);
 238     colourMenu.add(purinePyrimidineColour);
 239     colourMenu.add(userColour);
 240     colourMenu.add(jmolColour);
 241     colourMenu.add(backGround);
 242
 243     colourButtons.add(seqColour);
 244     colourButtons.add(chainColour);
 245     colourButtons.add(chargeColour);
 246     colourButtons.add(zappoColour);
 247     colourButtons.add(taylorColour);
 248     colourButtons.add(hydroColour);
 249     colourButtons.add(helixColour);
 250     colourButtons.add(strandColour);
 251     colourButtons.add(turnColour);
 252     colourButtons.add(buriedColour);
 253     colourButtons.add(userColour);
 254     colourButtons.add(jmolColour);
 255
 256     helpMenu.add(jmolHelp);
 257     jmolActionMenu.add(alignStructs);
 258   }
 259
 260   protected void jmolColour_actionPerformed(ActionEvent actionEvent)
 261   {
 262   }
 263
 264   protected void alignStructs_actionPerformed(ActionEvent actionEvent)
 265   {
 266   }
 267
 268   JMenuBar menuBar = new JMenuBar();
 269
 270   JMenu fileMenu = new JMenu();
 271
 272   JMenu savemenu = new JMenu();
 273
 274   JMenuItem pdbFile = new JMenuItem();
 275
 276   JMenuItem png = new JMenuItem();
 277
 278   JMenuItem eps = new JMenuItem();
 279
 280   JMenuItem viewMapping = new JMenuItem();
 281
 282   protected JMenu viewMenu = new JMenu();
 283
 284   protected JMenu chainMenu = new JMenu();
 285
 286   JMenu jMenu1 = new JMenu();
 287
 288   protected JMenu colourMenu = new JMenu();
 289
 290   protected JMenu jmolActionMenu = new JMenu();
 291
 292   protected JMenuItem alignStructs = new JMenuItem();
 293
 294   JMenuItem backGround = new JMenuItem();
 295
 296   protected JRadioButtonMenuItem seqColour = new JRadioButtonMenuItem();
 297
 298   protected JRadioButtonMenuItem chainColour = new JRadioButtonMenuItem();
 299
 300   protected JRadioButtonMenuItem chargeColour = new JRadioButtonMenuItem();
 301
 302   protected JRadioButtonMenuItem zappoColour = new JRadioButtonMenuItem();
 303
 304   protected JRadioButtonMenuItem taylorColour = new JRadioButtonMenuItem();
 305
 306   protected JRadioButtonMenuItem hydroColour = new JRadioButtonMenuItem();
 307
 308   protected JRadioButtonMenuItem strandColour = new JRadioButtonMenuItem();
 309
 310   protected JRadioButtonMenuItem helixColour = new JRadioButtonMenuItem();
 311
 312   protected JRadioButtonMenuItem turnColour = new JRadioButtonMenuItem();
 313
 314   protected JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem();
 315
 316   protected JRadioButtonMenuItem purinePyrimidineColour = new JRadioButtonMenuItem();
 317
 318   protected JRadioButtonMenuItem userColour = new JRadioButtonMenuItem();
 319
 320   protected JRadioButtonMenuItem jmolColour = new JRadioButtonMenuItem();
 321
 322   protected ButtonGroup colourButtons = new ButtonGroup();
 323
 324   JMenu helpMenu = new JMenu();
 325
 326   JMenuItem jmolHelp = new JMenuItem();
 327
 328   public void pdbFile_actionPerformed(ActionEvent actionEvent)
 329   {
 330
 331   }
 332
 333   public void png_actionPerformed(ActionEvent actionEvent)
 334   {
 335
 336   }
 337
 338   public void eps_actionPerformed(ActionEvent actionEvent)
 339   {
 340
 341   }
 342
 343   public void viewMapping_actionPerformed(ActionEvent actionEvent)
 344   {
 345
 346   }
 347
 348   public void seqColour_actionPerformed(ActionEvent actionEvent)
 349   {
 350
 351   }
 352
 353   public void chainColour_actionPerformed(ActionEvent actionEvent)
 354   {
 355
 356   }
 357
 358   public void chargeColour_actionPerformed(ActionEvent actionEvent)
 359   {
 360
 361   }
 362
 363   public void zappoColour_actionPerformed(ActionEvent actionEvent)
 364   {
 365
 366   }
 367
 368   public void taylorColour_actionPerformed(ActionEvent actionEvent)
 369   {
 370
 371   }
 372
 373   public void hydroColour_actionPerformed(ActionEvent actionEvent)
 374   {
 375
 376   }
 377
 378   public void helixColour_actionPerformed(ActionEvent actionEvent)
 379   {
 380
 381   }
 382
 383   public void strandColour_actionPerformed(ActionEvent actionEvent)
 384   {
 385
 386   }
 387
 388   public void turnColour_actionPerformed(ActionEvent actionEvent)
 389   {
 390
 391   }
 392
 393   public void buriedColour_actionPerformed(ActionEvent actionEvent)
 394   {
 395
 396   }
 397
 398   public void purinePyrimidineColour_actionPerformed(ActionEvent actionEvent)
 399   {
 400
 401   }
 402
 403   public void userColour_actionPerformed(ActionEvent actionEvent)
 404   {
 405
 406   }
 407
 408   public void backGround_actionPerformed(ActionEvent actionEvent)
 409   {
 410
 411   }
 412
 413   public void jmolHelp_actionPerformed(ActionEvent actionEvent)
 414   {
 415
 416   }
 417 }