src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java

   1 /*
   2  * This class was automatically generated with
   3  * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
   4  * Schema.
   5  * $Id$
   6  */
   7
   8 package jalview.schemabinding.version2.descriptors;
   9
  10   //---------------------------------/
  11  //- Imported classes and packages -/
  12 //---------------------------------/
  13
  14 import jalview.schemabinding.version2.JSeq;
  15
  16 /**
  17  * Class JSeqDescriptor.
  18  *
  19  * @version $Revision$ $Date$
  20  */
  21 public class JSeqDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
  22
  23
  24       //--------------------------/
  25      //- Class/Member Variables -/
  26     //--------------------------/
  27
  28     /**
  29      * Field _elementDefinition.
  30      */
  31     private boolean _elementDefinition;
  32
  33     /**
  34      * Field _nsPrefix.
  35      */
  36     private java.lang.String _nsPrefix;
  37
  38     /**
  39      * Field _nsURI.
  40      */
  41     private java.lang.String _nsURI;
  42
  43     /**
  44      * Field _xmlName.
  45      */
  46     private java.lang.String _xmlName;
  47
  48
  49       //----------------/
  50      //- Constructors -/
  51     //----------------/
  52
  53     public JSeqDescriptor() {
  54         super();
  55         _nsURI = "www.jalview.org";
  56         _xmlName = "JSeq";
  57         _elementDefinition = true;
  58
  59         //-- set grouping compositor
  60         setCompositorAsSequence();
  61         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;
  62         org.exolab.castor.mapping.FieldHandler             handler        = null;
  63         org.exolab.castor.xml.FieldValidator               fieldValidator = null;
  64         //-- initialize attribute descriptors
  65
  66         //-- _colour
  67         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_colour", "colour", org.exolab.castor.xml.NodeType.Attribute);
  68         handler = new org.exolab.castor.xml.XMLFieldHandler() {
  69             public java.lang.Object getValue( java.lang.Object object )
  70                 throws IllegalStateException
  71             {
  72                 JSeq target = (JSeq) object;
  73                 if (!target.hasColour()) { return null; }
  74                 return new java.lang.Integer(target.getColour());
  75             }
  76             public void setValue( java.lang.Object object, java.lang.Object value)
  77                 throws IllegalStateException, IllegalArgumentException
  78             {
  79                 try {
  80                     JSeq target = (JSeq) object;
  81                     // if null, use delete method for optional primitives
  82                     if (value == null) {
  83                         target.deleteColour();
  84                         return;
  85                     }
  86                     target.setColour( ((java.lang.Integer) value).intValue());
  87                 } catch (java.lang.Exception ex) {
  88                     throw new IllegalStateException(ex.toString());
  89                 }
  90             }
  91             public java.lang.Object newInstance(java.lang.Object parent) {
  92                 return null;
  93             }
  94         };
  95         desc.setHandler(handler);
  96         desc.setMultivalued(false);
  97         addFieldDescriptor(desc);
  98
  99         //-- validation code for: _colour
 100         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 101         { //-- local scope
 102             org.exolab.castor.xml.validators.IntValidator typeValidator;
 103             typeValidator = new org.exolab.castor.xml.validators.IntValidator();
 104             fieldValidator.setValidator(typeValidator);
 105             typeValidator.setMinInclusive(-2147483648);
 106             typeValidator.setMaxInclusive(2147483647);
 107         }
 108         desc.setValidator(fieldValidator);
 109         //-- _start
 110         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_start", "start", org.exolab.castor.xml.NodeType.Attribute);
 111         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 112             public java.lang.Object getValue( java.lang.Object object )
 113                 throws IllegalStateException
 114             {
 115                 JSeq target = (JSeq) object;
 116                 if (!target.hasStart()) { return null; }
 117                 return new java.lang.Integer(target.getStart());
 118             }
 119             public void setValue( java.lang.Object object, java.lang.Object value)
 120                 throws IllegalStateException, IllegalArgumentException
 121             {
 122                 try {
 123                     JSeq target = (JSeq) object;
 124                     // ignore null values for non optional primitives
 125                     if (value == null) { return; }
 126
 127                     target.setStart( ((java.lang.Integer) value).intValue());
 128                 } catch (java.lang.Exception ex) {
 129                     throw new IllegalStateException(ex.toString());
 130                 }
 131             }
 132             public java.lang.Object newInstance(java.lang.Object parent) {
 133                 return null;
 134             }
 135         };
 136         desc.setHandler(handler);
 137         desc.setRequired(true);
 138         desc.setMultivalued(false);
 139         addFieldDescriptor(desc);
 140
 141         //-- validation code for: _start
 142         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 143         fieldValidator.setMinOccurs(1);
 144         { //-- local scope
 145             org.exolab.castor.xml.validators.IntValidator typeValidator;
 146             typeValidator = new org.exolab.castor.xml.validators.IntValidator();
 147             fieldValidator.setValidator(typeValidator);
 148             typeValidator.setMinInclusive(-2147483648);
 149             typeValidator.setMaxInclusive(2147483647);
 150         }
 151         desc.setValidator(fieldValidator);
 152         //-- _end
 153         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_end", "end", org.exolab.castor.xml.NodeType.Attribute);
 154         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 155             public java.lang.Object getValue( java.lang.Object object )
 156                 throws IllegalStateException
 157             {
 158                 JSeq target = (JSeq) object;
 159                 if (!target.hasEnd()) { return null; }
 160                 return new java.lang.Integer(target.getEnd());
 161             }
 162             public void setValue( java.lang.Object object, java.lang.Object value)
 163                 throws IllegalStateException, IllegalArgumentException
 164             {
 165                 try {
 166                     JSeq target = (JSeq) object;
 167                     // ignore null values for non optional primitives
 168                     if (value == null) { return; }
 169
 170                     target.setEnd( ((java.lang.Integer) value).intValue());
 171                 } catch (java.lang.Exception ex) {
 172                     throw new IllegalStateException(ex.toString());
 173                 }
 174             }
 175             public java.lang.Object newInstance(java.lang.Object parent) {
 176                 return null;
 177             }
 178         };
 179         desc.setHandler(handler);
 180         desc.setRequired(true);
 181         desc.setMultivalued(false);
 182         addFieldDescriptor(desc);
 183
 184         //-- validation code for: _end
 185         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 186         fieldValidator.setMinOccurs(1);
 187         { //-- local scope
 188             org.exolab.castor.xml.validators.IntValidator typeValidator;
 189             typeValidator = new org.exolab.castor.xml.validators.IntValidator();
 190             fieldValidator.setValidator(typeValidator);
 191             typeValidator.setMinInclusive(-2147483648);
 192             typeValidator.setMaxInclusive(2147483647);
 193         }
 194         desc.setValidator(fieldValidator);
 195         //-- _id
 196         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);
 197         desc.setImmutable(true);
 198         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 199             public java.lang.Object getValue( java.lang.Object object )
 200                 throws IllegalStateException
 201             {
 202                 JSeq target = (JSeq) object;
 203                 return target.getId();
 204             }
 205             public void setValue( java.lang.Object object, java.lang.Object value)
 206                 throws IllegalStateException, IllegalArgumentException
 207             {
 208                 try {
 209                     JSeq target = (JSeq) object;
 210                     target.setId( (java.lang.String) value);
 211                 } catch (java.lang.Exception ex) {
 212                     throw new IllegalStateException(ex.toString());
 213                 }
 214             }
 215             public java.lang.Object newInstance(java.lang.Object parent) {
 216                 return null;
 217             }
 218         };
 219         desc.setHandler(handler);
 220         desc.setRequired(true);
 221         desc.setMultivalued(false);
 222         addFieldDescriptor(desc);
 223
 224         //-- validation code for: _id
 225         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 226         fieldValidator.setMinOccurs(1);
 227         { //-- local scope
 228             org.exolab.castor.xml.validators.StringValidator typeValidator;
 229             typeValidator = new org.exolab.castor.xml.validators.StringValidator();
 230             fieldValidator.setValidator(typeValidator);
 231             typeValidator.setWhiteSpace("preserve");
 232         }
 233         desc.setValidator(fieldValidator);
 234         //-- _hidden
 235         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_hidden", "hidden", org.exolab.castor.xml.NodeType.Attribute);
 236         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 237             public java.lang.Object getValue( java.lang.Object object )
 238                 throws IllegalStateException
 239             {
 240                 JSeq target = (JSeq) object;
 241                 if (!target.hasHidden()) { return null; }
 242                 return (target.getHidden() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
 243             }
 244             public void setValue( java.lang.Object object, java.lang.Object value)
 245                 throws IllegalStateException, IllegalArgumentException
 246             {
 247                 try {
 248                     JSeq target = (JSeq) object;
 249                     // if null, use delete method for optional primitives
 250                     if (value == null) {
 251                         target.deleteHidden();
 252                         return;
 253                     }
 254                     target.setHidden( ((java.lang.Boolean) value).booleanValue());
 255                 } catch (java.lang.Exception ex) {
 256                     throw new IllegalStateException(ex.toString());
 257                 }
 258             }
 259             public java.lang.Object newInstance(java.lang.Object parent) {
 260                 return null;
 261             }
 262         };
 263         desc.setHandler(handler);
 264         desc.setMultivalued(false);
 265         addFieldDescriptor(desc);
 266
 267         //-- validation code for: _hidden
 268         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 269         { //-- local scope
 270             org.exolab.castor.xml.validators.BooleanValidator typeValidator;
 271             typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
 272             fieldValidator.setValidator(typeValidator);
 273         }
 274         desc.setValidator(fieldValidator);
 275         //-- _viewreference
 276         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_viewreference", "viewreference", org.exolab.castor.xml.NodeType.Attribute);
 277         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 278             public java.lang.Object getValue( java.lang.Object object )
 279                 throws IllegalStateException
 280             {
 281                 JSeq target = (JSeq) object;
 282                 if (!target.hasViewreference()) { return null; }
 283                 return (target.getViewreference() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
 284             }
 285             public void setValue( java.lang.Object object, java.lang.Object value)
 286                 throws IllegalStateException, IllegalArgumentException
 287             {
 288                 try {
 289                     JSeq target = (JSeq) object;
 290                     // if null, use delete method for optional primitives
 291                     if (value == null) {
 292                         target.deleteViewreference();
 293                         return;
 294                     }
 295                     target.setViewreference( ((java.lang.Boolean) value).booleanValue());
 296                 } catch (java.lang.Exception ex) {
 297                     throw new IllegalStateException(ex.toString());
 298                 }
 299             }
 300             public java.lang.Object newInstance(java.lang.Object parent) {
 301                 return null;
 302             }
 303         };
 304         desc.setHandler(handler);
 305         desc.setMultivalued(false);
 306         addFieldDescriptor(desc);
 307
 308         //-- validation code for: _viewreference
 309         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 310         { //-- local scope
 311             org.exolab.castor.xml.validators.BooleanValidator typeValidator;
 312             typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
 313             fieldValidator.setValidator(typeValidator);
 314         }
 315         desc.setValidator(fieldValidator);
 316         //-- initialize element descriptors
 317
 318         //-- _featuresList
 319         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Features.class, "_featuresList", "features", org.exolab.castor.xml.NodeType.Element);
 320         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 321             public java.lang.Object getValue( java.lang.Object object )
 322                 throws IllegalStateException
 323             {
 324                 JSeq target = (JSeq) object;
 325                 return target.getFeatures();
 326             }
 327             public void setValue( java.lang.Object object, java.lang.Object value)
 328                 throws IllegalStateException, IllegalArgumentException
 329             {
 330                 try {
 331                     JSeq target = (JSeq) object;
 332                     target.addFeatures( (jalview.schemabinding.version2.Features) value);
 333                 } catch (java.lang.Exception ex) {
 334                     throw new IllegalStateException(ex.toString());
 335                 }
 336             }
 337             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
 338                 try {
 339                     JSeq target = (JSeq) object;
 340                     target.removeAllFeatures();
 341                 } catch (java.lang.Exception ex) {
 342                     throw new IllegalStateException(ex.toString());
 343                 }
 344             }
 345             public java.lang.Object newInstance(java.lang.Object parent) {
 346                 return new jalview.schemabinding.version2.Features();
 347             }
 348         };
 349         desc.setHandler(handler);
 350         desc.setNameSpaceURI("www.jalview.org");
 351         desc.setMultivalued(true);
 352         addFieldDescriptor(desc);
 353
 354         //-- validation code for: _featuresList
 355         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 356         fieldValidator.setMinOccurs(0);
 357         { //-- local scope
 358         }
 359         desc.setValidator(fieldValidator);
 360         //-- _pdbidsList
 361         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Pdbids.class, "_pdbidsList", "pdbids", org.exolab.castor.xml.NodeType.Element);
 362         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 363             public java.lang.Object getValue( java.lang.Object object )
 364                 throws IllegalStateException
 365             {
 366                 JSeq target = (JSeq) object;
 367                 return target.getPdbids();
 368             }
 369             public void setValue( java.lang.Object object, java.lang.Object value)
 370                 throws IllegalStateException, IllegalArgumentException
 371             {
 372                 try {
 373                     JSeq target = (JSeq) object;
 374                     target.addPdbids( (jalview.schemabinding.version2.Pdbids) value);
 375                 } catch (java.lang.Exception ex) {
 376                     throw new IllegalStateException(ex.toString());
 377                 }
 378             }
 379             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
 380                 try {
 381                     JSeq target = (JSeq) object;
 382                     target.removeAllPdbids();
 383                 } catch (java.lang.Exception ex) {
 384                     throw new IllegalStateException(ex.toString());
 385                 }
 386             }
 387             public java.lang.Object newInstance(java.lang.Object parent) {
 388                 return new jalview.schemabinding.version2.Pdbids();
 389             }
 390         };
 391         desc.setHandler(handler);
 392         desc.setNameSpaceURI("www.jalview.org");
 393         desc.setMultivalued(true);
 394         addFieldDescriptor(desc);
 395
 396         //-- validation code for: _pdbidsList
 397         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 398         fieldValidator.setMinOccurs(0);
 399         { //-- local scope
 400         }
 401         desc.setValidator(fieldValidator);
 402         //-- _hiddenSequencesList
 403         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_hiddenSequencesList", "hiddenSequences", org.exolab.castor.xml.NodeType.Element);
 404         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 405             public java.lang.Object getValue( java.lang.Object object )
 406                 throws IllegalStateException
 407             {
 408                 JSeq target = (JSeq) object;
 409                 return target.getHiddenSequences();
 410             }
 411             public void setValue( java.lang.Object object, java.lang.Object value)
 412                 throws IllegalStateException, IllegalArgumentException
 413             {
 414                 try {
 415                     JSeq target = (JSeq) object;
 416                     // ignore null values for non optional primitives
 417                     if (value == null) { return; }
 418
 419                     target.addHiddenSequences( ((java.lang.Integer) value).intValue());
 420                 } catch (java.lang.Exception ex) {
 421                     throw new IllegalStateException(ex.toString());
 422                 }
 423             }
 424             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
 425                 try {
 426                     JSeq target = (JSeq) object;
 427                     target.removeAllHiddenSequences();
 428                 } catch (java.lang.Exception ex) {
 429                     throw new IllegalStateException(ex.toString());
 430                 }
 431             }
 432             public java.lang.Object newInstance(java.lang.Object parent) {
 433                 return null;
 434             }
 435         };
 436         desc.setHandler(handler);
 437         desc.setNameSpaceURI("www.jalview.org");
 438         desc.setMultivalued(true);
 439         addFieldDescriptor(desc);
 440
 441         //-- validation code for: _hiddenSequencesList
 442         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 443         fieldValidator.setMinOccurs(0);
 444         { //-- local scope
 445             org.exolab.castor.xml.validators.IntValidator typeValidator;
 446             typeValidator = new org.exolab.castor.xml.validators.IntValidator();
 447             fieldValidator.setValidator(typeValidator);
 448             typeValidator.setMinInclusive(-2147483648);
 449             typeValidator.setMaxInclusive(2147483647);
 450         }
 451         desc.setValidator(fieldValidator);
 452         //-- _rnaViewerList
 453         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.RnaViewer.class, "_rnaViewerList", "rnaViewer", org.exolab.castor.xml.NodeType.Element);
 454         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 455             public java.lang.Object getValue( java.lang.Object object )
 456                 throws IllegalStateException
 457             {
 458                 JSeq target = (JSeq) object;
 459                 return target.getRnaViewer();
 460             }
 461             public void setValue( java.lang.Object object, java.lang.Object value)
 462                 throws IllegalStateException, IllegalArgumentException
 463             {
 464                 try {
 465                     JSeq target = (JSeq) object;
 466                     target.addRnaViewer( (jalview.schemabinding.version2.RnaViewer) value);
 467                 } catch (java.lang.Exception ex) {
 468                     throw new IllegalStateException(ex.toString());
 469                 }
 470             }
 471             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
 472                 try {
 473                     JSeq target = (JSeq) object;
 474                     target.removeAllRnaViewer();
 475                 } catch (java.lang.Exception ex) {
 476                     throw new IllegalStateException(ex.toString());
 477                 }
 478             }
 479             public java.lang.Object newInstance(java.lang.Object parent) {
 480                 return new jalview.schemabinding.version2.RnaViewer();
 481             }
 482         };
 483         desc.setHandler(handler);
 484         desc.setNameSpaceURI("www.jalview.org");
 485         desc.setMultivalued(true);
 486         addFieldDescriptor(desc);
 487
 488         //-- validation code for: _rnaViewerList
 489         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 490         fieldValidator.setMinOccurs(0);
 491         { //-- local scope
 492         }
 493         desc.setValidator(fieldValidator);
 494         //-- _hmmerProfile
 495         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_hmmerProfile", "hmmerProfile", org.exolab.castor.xml.NodeType.Element);
 496         desc.setImmutable(true);
 497         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 498             public java.lang.Object getValue( java.lang.Object object )
 499                 throws IllegalStateException
 500             {
 501                 JSeq target = (JSeq) object;
 502                 return target.getHmmerProfile();
 503             }
 504             public void setValue( java.lang.Object object, java.lang.Object value)
 505                 throws IllegalStateException, IllegalArgumentException
 506             {
 507                 try {
 508                     JSeq target = (JSeq) object;
 509                     target.setHmmerProfile( (java.lang.String) value);
 510                 } catch (java.lang.Exception ex) {
 511                     throw new IllegalStateException(ex.toString());
 512                 }
 513             }
 514             public java.lang.Object newInstance(java.lang.Object parent) {
 515                 return null;
 516             }
 517         };
 518         desc.setHandler(handler);
 519         desc.setNameSpaceURI("www.jalview.org");
 520         desc.setMultivalued(false);
 521         addFieldDescriptor(desc);
 522
 523         //-- validation code for: _hmmerProfile
 524         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 525         { //-- local scope
 526             org.exolab.castor.xml.validators.StringValidator typeValidator;
 527             typeValidator = new org.exolab.castor.xml.validators.StringValidator();
 528             fieldValidator.setValidator(typeValidator);
 529             typeValidator.setWhiteSpace("preserve");
 530         }
 531         desc.setValidator(fieldValidator);
 532     }
 533
 534
 535       //-----------/
 536      //- Methods -/
 537     //-----------/
 538
 539     /**
 540      * Method getAccessMode.
 541      *
 542      * @return the access mode specified for this class.
 543      */
 544     public org.exolab.castor.mapping.AccessMode getAccessMode(
 545     ) {
 546         return null;
 547     }
 548
 549     /**
 550      * Method getIdentity.
 551      *
 552      * @return the identity field, null if this class has no
 553      * identity.
 554      */
 555     public org.exolab.castor.mapping.FieldDescriptor getIdentity(
 556     ) {
 557         return super.getIdentity();
 558     }
 559
 560     /**
 561      * Method getJavaClass.
 562      *
 563      * @return the Java class represented by this descriptor.
 564      */
 565     public java.lang.Class getJavaClass(
 566     ) {
 567         return jalview.schemabinding.version2.JSeq.class;
 568     }
 569
 570     /**
 571      * Method getNameSpacePrefix.
 572      *
 573      * @return the namespace prefix to use when marshaling as XML.
 574      */
 575     public java.lang.String getNameSpacePrefix(
 576     ) {
 577         return _nsPrefix;
 578     }
 579
 580     /**
 581      * Method getNameSpaceURI.
 582      *
 583      * @return the namespace URI used when marshaling and
 584      * unmarshaling as XML.
 585      */
 586     public java.lang.String getNameSpaceURI(
 587     ) {
 588         return _nsURI;
 589     }
 590
 591     /**
 592      * Method getValidator.
 593      *
 594      * @return a specific validator for the class described by this
 595      * ClassDescriptor.
 596      */
 597     public org.exolab.castor.xml.TypeValidator getValidator(
 598     ) {
 599         return this;
 600     }
 601
 602     /**
 603      * Method getXMLName.
 604      *
 605      * @return the XML Name for the Class being described.
 606      */
 607     public java.lang.String getXMLName(
 608     ) {
 609         return _xmlName;
 610     }
 611
 612     /**
 613      * Method isElementDefinition.
 614      *
 615      * @return true if XML schema definition of this Class is that
 616      * of a global
 617      * element or element with anonymous type definition.
 618      */
 619     public boolean isElementDefinition(
 620     ) {
 621         return _elementDefinition;
 622     }
 623
 624 }