source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	gmungoc <g.m.carstairs@dundee.ac.uk>
	Fri, 11 May 2018 11:29:53 +0000 (12:29 +0100)
committer	gmungoc <g.m.carstairs@dundee.ac.uk>
	Fri, 11 May 2018 11:29:53 +0000 (12:29 +0100)
commit	6d882bd2c72c5fe9e8d0a8eb9df4de7a86bbc773
tree	fff1400b5b68006697bb709c3293fc10a2d5afca	tree \| snapshot
parent	04a92acb1e484730552d42fdf2d356e04551c5ea	commit \| diff

JAL-2629 update spike branch to latest

65 files changed:

.classpath		diff \| blob \| history
THIRDPARTYLIBS		diff \| blob \| history
help/help.jhm		diff \| blob \| history
help/helpTOC.xml		diff \| blob \| history
help/html/features/chimera.html		diff \| blob \| history
help/html/features/jmol.html		diff \| blob \| history
help/html/features/preferences.html		diff \| blob \| history
help/html/features/schooser_enter-id.png		diff \| blob \| history
help/html/features/schooser_main.png		diff \| blob \| history
help/html/features/structurechooser.html		diff \| blob \| history
help/html/features/viewingpdbs.html		diff \| blob \| history
help/html/menus/desktopMenu.html		diff \| blob \| history
help/html/releases.html		diff \| blob \| history
help/html/whatsNew.html		diff \| blob \| history
lib/VAqua4.jar	[new file with mode: 0644]	blob
resources/lang/Messages.properties		diff \| blob \| history
resources/lang/Messages_es.properties		diff \| blob \| history
schemas/jalview.xsd		diff \| blob \| history
src/MCview/PDBChain.java		diff \| blob \| history
src/jalview/api/structures/JalviewStructureDisplayI.java		diff \| blob \| history
src/jalview/bin/Jalview.java		diff \| blob \| history
src/jalview/datamodel/HiddenMarkovModel.java		diff \| blob \| history
src/jalview/datamodel/SearchResults.java		diff \| blob \| history
src/jalview/datamodel/Sequence.java		diff \| blob \| history
src/jalview/ext/jmol/JalviewJmolBinding.java		diff \| blob \| history
src/jalview/fts/core/FTSRestClient.java		diff \| blob \| history
src/jalview/gui/AlignFrame.java		diff \| blob \| history
src/jalview/gui/AnnotationColourChooser.java		diff \| blob \| history
src/jalview/gui/AnnotationRowFilter.java		diff \| blob \| history
src/jalview/gui/AppJmol.java		diff \| blob \| history
src/jalview/gui/ChimeraViewFrame.java		diff \| blob \| history
src/jalview/gui/Desktop.java		diff \| blob \| history
src/jalview/gui/JDatabaseTree.java		diff \| blob \| history
src/jalview/gui/Jalview2XML.java		diff \| blob \| history
src/jalview/gui/OptsAndParamsPage.java		diff \| blob \| history
src/jalview/gui/PCAPanel.java		diff \| blob \| history
src/jalview/gui/SeqPanel.java		diff \| blob \| history
src/jalview/gui/SequenceFetcher.java		diff \| blob \| history
src/jalview/gui/StructureChooser.java		diff \| blob \| history
src/jalview/gui/StructureViewer.java		diff \| blob \| history
src/jalview/gui/StructureViewerBase.java		diff \| blob \| history
src/jalview/gui/WsParamSetManager.java		diff \| blob \| history
src/jalview/hmmer/HMMBuild.java		diff \| blob \| history
src/jalview/hmmer/HMMERParamStore.java		diff \| blob \| history
src/jalview/hmmer/HMMSearch.java		diff \| blob \| history
src/jalview/io/HMMFile.java		diff \| blob \| history
src/jalview/jbgui/GStructureChooser.java		diff \| blob \| history
src/jalview/schemabinding/version2/JSeq.java		diff \| blob \| history
src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java		diff \| blob \| history
src/jalview/structure/StructureMapping.java		diff \| blob \| history
src/jalview/structure/StructureSelectionManager.java		diff \| blob \| history
src/jalview/util/MapList.java		diff \| blob \| history
src/jalview/workers/InformationThread.java		diff \| blob \| history
src/jalview/ws/params/simple/LogarithmicParameter.java		diff \| blob \| history
src/jalview/ws/params/simple/StringChoiceParameter.java		diff \| blob \| history
src/jalview/ws/params/simple/StringParameter.java		diff \| blob \| history
test/MCview/PDBChainTest.java		diff \| blob \| history
test/jalview/datamodel/SequenceTest.java		diff \| blob \| history
test/jalview/datamodel/features/FeatureAttributesTest.java		diff \| blob \| history
test/jalview/ext/jmol/JmolViewerTest.java		diff \| blob \| history
test/jalview/gui/StructureChooserTest.java		diff \| blob \| history
test/jalview/io/Jalview2xmlTests.java		diff \| blob \| history
test/jalview/structure/StructureMappingTest.java		diff \| blob \| history
test/jalview/util/MapListTest.java		diff \| blob \| history
utils/InstallAnywhere/Jalview.iap_xml		diff \| blob \| history

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