src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
   3  * Copyright (C) $$Year-Rel$$ The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21 package uk.ac.ebi.www.picr.AccessionMappingService;
  22
  23 public class AccessionMapperBindingStub extends org.apache.axis.client.Stub
  24         implements
  25         uk.ac.ebi.www.picr.AccessionMappingService.AccessionMapperInterface
  26 {
  27   private java.util.Vector cachedSerClasses = new java.util.Vector();
  28
  29   private java.util.Vector cachedSerQNames = new java.util.Vector();
  30
  31   private java.util.Vector cachedSerFactories = new java.util.Vector();
  32
  33   private java.util.Vector cachedDeserFactories = new java.util.Vector();
  34
  35   static org.apache.axis.description.OperationDesc[] _operations;
  36
  37   static
  38   {
  39     _operations = new org.apache.axis.description.OperationDesc[3];
  40     _initOperationDesc1();
  41   }
  42
  43   private static void _initOperationDesc1()
  44   {
  45     org.apache.axis.description.OperationDesc oper;
  46     oper = new org.apache.axis.description.OperationDesc();
  47     oper.setName("getUPIForSequence");
  48     oper.addParameter(
  49             new javax.xml.namespace.QName(
  50                     "http://www.ebi.ac.uk/picr/AccessionMappingService",
  51                     "sequence"),
  52             new javax.xml.namespace.QName(
  53                     "http://www.w3.org/2001/XMLSchema", "string"),
  54             java.lang.String.class,
  55             org.apache.axis.description.ParameterDesc.IN, false, false);
  56     oper.addParameter(
  57             new javax.xml.namespace.QName(
  58                     "http://www.ebi.ac.uk/picr/AccessionMappingService",
  59                     "searchDatabases"),
  60             new javax.xml.namespace.QName(
  61                     "http://www.w3.org/2001/XMLSchema", "string"),
  62             java.lang.String[].class,
  63             org.apache.axis.description.ParameterDesc.IN, false, false);
  64     oper.addParameter(new javax.xml.namespace.QName(
  65             "http://www.ebi.ac.uk/picr/AccessionMappingService", "taxonId"),
  66             new javax.xml.namespace.QName(
  67                     "http://www.w3.org/2001/XMLSchema", "string"),
  68             java.lang.String.class,
  69             org.apache.axis.description.ParameterDesc.IN, false, false);
  70     oper.addParameter(
  71             new javax.xml.namespace.QName(
  72                     "http://www.ebi.ac.uk/picr/AccessionMappingService",
  73                     "onlyActive"),
  74             new javax.xml.namespace.QName(
  75                     "http://www.w3.org/2001/XMLSchema", "boolean"),
  76             boolean.class, org.apache.axis.description.ParameterDesc.IN,
  77             false, false);
  78     oper.setReturnType(new javax.xml.namespace.QName(
  79             "http://model.picr.ebi.ac.uk", "UPEntry"));
  80     oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry.class);
  81     oper.setReturnQName(new javax.xml.namespace.QName(
  82             "http://www.ebi.ac.uk/picr/AccessionMappingService",
  83             "getUPIForSequenceReturn"));
  84     oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
  85     oper.setUse(org.apache.axis.constants.Use.LITERAL);
  86     _operations[0] = oper;
  87
  88     oper = new org.apache.axis.description.OperationDesc();
  89     oper.setName("getUPIForAccession");
  90     oper.addParameter(
  91             new javax.xml.namespace.QName(
  92                     "http://www.ebi.ac.uk/picr/AccessionMappingService",
  93                     "accession"),
  94             new javax.xml.namespace.QName(
  95                     "http://www.w3.org/2001/XMLSchema", "string"),
  96             java.lang.String.class,
  97             org.apache.axis.description.ParameterDesc.IN, false, false);
  98     oper.addParameter(
  99             new javax.xml.namespace.QName(
 100                     "http://www.ebi.ac.uk/picr/AccessionMappingService",
 101                     "ac_version"),
 102             new javax.xml.namespace.QName(
 103                     "http://www.w3.org/2001/XMLSchema", "string"),
 104             java.lang.String.class,
 105             org.apache.axis.description.ParameterDesc.IN, false, false);
 106     oper.addParameter(
 107             new javax.xml.namespace.QName(
 108                     "http://www.ebi.ac.uk/picr/AccessionMappingService",
 109                     "searchDatabases"),
 110             new javax.xml.namespace.QName(
 111                     "http://www.w3.org/2001/XMLSchema", "string"),
 112             java.lang.String[].class,
 113             org.apache.axis.description.ParameterDesc.IN, false, false);
 114     oper.addParameter(new javax.xml.namespace.QName(
 115             "http://www.ebi.ac.uk/picr/AccessionMappingService", "taxonId"),
 116             new javax.xml.namespace.QName(
 117                     "http://www.w3.org/2001/XMLSchema", "string"),
 118             java.lang.String.class,
 119             org.apache.axis.description.ParameterDesc.IN, false, false);
 120     oper.addParameter(
 121             new javax.xml.namespace.QName(
 122                     "http://www.ebi.ac.uk/picr/AccessionMappingService",
 123                     "onlyActive"),
 124             new javax.xml.namespace.QName(
 125                     "http://www.w3.org/2001/XMLSchema", "boolean"),
 126             boolean.class, org.apache.axis.description.ParameterDesc.IN,
 127             false, false);
 128     oper.setReturnType(new javax.xml.namespace.QName(
 129             "http://model.picr.ebi.ac.uk", "UPEntry"));
 130     oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry[].class);
 131     oper.setReturnQName(new javax.xml.namespace.QName(
 132             "http://www.ebi.ac.uk/picr/AccessionMappingService",
 133             "getUPIForAccessionReturn"));
 134     oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
 135     oper.setUse(org.apache.axis.constants.Use.LITERAL);
 136     _operations[1] = oper;
 137
 138     oper = new org.apache.axis.description.OperationDesc();
 139     oper.setName("getMappedDatabaseNames");
 140     oper.setReturnType(new javax.xml.namespace.QName(
 141             "http://www.w3.org/2001/XMLSchema", "string"));
 142     oper.setReturnClass(java.lang.String[].class);
 143     oper.setReturnQName(new javax.xml.namespace.QName(
 144             "http://www.ebi.ac.uk/picr/AccessionMappingService",
 145             "mappedDatabases"));
 146     oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
 147     oper.setUse(org.apache.axis.constants.Use.LITERAL);
 148     _operations[2] = oper;
 149
 150   }
 151
 152   public AccessionMapperBindingStub() throws org.apache.axis.AxisFault
 153   {
 154     this(null);
 155   }
 156
 157   public AccessionMapperBindingStub(java.net.URL endpointURL,
 158           javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
 159   {
 160     this(service);
 161     super.cachedEndpoint = endpointURL;
 162   }
 163
 164   public AccessionMapperBindingStub(javax.xml.rpc.Service service)
 165           throws org.apache.axis.AxisFault
 166   {
 167     if (service == null)
 168     {
 169       super.service = new org.apache.axis.client.Service();
 170     }
 171     else
 172     {
 173       super.service = service;
 174     }
 175     java.lang.Class cls;
 176     javax.xml.namespace.QName qName;
 177     java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
 178     java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
 179     java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
 180     java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
 181     java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
 182     java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
 183     java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
 184     java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
 185     java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
 186     java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
 187     qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",
 188             "UPEntry");
 189     cachedSerQNames.add(qName);
 190     cls = uk.ac.ebi.picr.model.UPEntry.class;
 191     cachedSerClasses.add(cls);
 192     cachedSerFactories.add(beansf);
 193     cachedDeserFactories.add(beandf);
 194
 195     qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",
 196             "CrossReference");
 197     cachedSerQNames.add(qName);
 198     cls = uk.ac.ebi.picr.model.CrossReference.class;
 199     cachedSerClasses.add(cls);
 200     cachedSerFactories.add(beansf);
 201     cachedDeserFactories.add(beandf);
 202
 203   }
 204
 205   protected org.apache.axis.client.Call createCall()
 206           throws java.rmi.RemoteException
 207   {
 208     try
 209     {
 210       org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
 211               .createCall();
 212       if (super.maintainSessionSet)
 213       {
 214         _call.setMaintainSession(super.maintainSession);
 215       }
 216       if (super.cachedUsername != null)
 217       {
 218         _call.setUsername(super.cachedUsername);
 219       }
 220       if (super.cachedPassword != null)
 221       {
 222         _call.setPassword(super.cachedPassword);
 223       }
 224       if (super.cachedEndpoint != null)
 225       {
 226         _call.setTargetEndpointAddress(super.cachedEndpoint);
 227       }
 228       if (super.cachedTimeout != null)
 229       {
 230         _call.setTimeout(super.cachedTimeout);
 231       }
 232       if (super.cachedPortName != null)
 233       {
 234         _call.setPortName(super.cachedPortName);
 235       }
 236       java.util.Enumeration keys = super.cachedProperties.keys();
 237       while (keys.hasMoreElements())
 238       {
 239         java.lang.String key = (java.lang.String) keys.nextElement();
 240         _call.setProperty(key, super.cachedProperties.get(key));
 241       }
 242       // All the type mapping information is registered
 243       // when the first call is made.
 244       // The type mapping information is actually registered in
 245       // the TypeMappingRegistry of the service, which
 246       // is the reason why registration is only needed for the first call.
 247       synchronized (this)
 248       {
 249         if (firstCall())
 250         {
 251           // must set encoding style before registering serializers
 252           _call.setEncodingStyle(null);
 253           for (int i = 0; i < cachedSerFactories.size(); ++i)
 254           {
 255             java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
 256             javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
 257                     .get(i);
 258             java.lang.Class sf = (java.lang.Class) cachedSerFactories
 259                     .get(i);
 260             java.lang.Class df = (java.lang.Class) cachedDeserFactories
 261                     .get(i);
 262             _call.registerTypeMapping(cls, qName, sf, df, false);
 263           }
 264         }
 265       }
 266       return _call;
 267     } catch (java.lang.Throwable _t)
 268     {
 269       throw new org.apache.axis.AxisFault(
 270               "Failure trying to get the Call object", _t);
 271     }
 272   }
 273
 274   public uk.ac.ebi.picr.model.UPEntry getUPIForSequence(
 275           java.lang.String sequence, java.lang.String[] searchDatabases,
 276           java.lang.String taxonId, boolean onlyActive)
 277           throws java.rmi.RemoteException
 278   {
 279     if (super.cachedEndpoint == null)
 280     {
 281       throw new org.apache.axis.NoEndPointException();
 282     }
 283     org.apache.axis.client.Call _call = createCall();
 284     _call.setOperation(_operations[0]);
 285     _call.setUseSOAPAction(true);
 286     _call.setSOAPActionURI("getUPIForSequence");
 287     _call.setEncodingStyle(null);
 288     _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
 289             Boolean.FALSE);
 290     _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
 291             Boolean.FALSE);
 292     _call.setSOAPVersion(
 293             org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
 294     _call.setOperationName(new javax.xml.namespace.QName(
 295             "http://www.ebi.ac.uk/picr/AccessionMappingService",
 296             "getUPIForSequence"));
 297
 298     setRequestHeaders(_call);
 299     setAttachments(_call);
 300     java.lang.Object _resp = _call
 301             .invoke(new java.lang.Object[]
 302             { sequence, searchDatabases, taxonId,
 303                 java.lang.Boolean.valueOf(onlyActive) });
 304
 305     if (_resp instanceof java.rmi.RemoteException)
 306     {
 307       throw (java.rmi.RemoteException) _resp;
 308     }
 309     else
 310     {
 311       extractAttachments(_call);
 312       try
 313       {
 314         return (uk.ac.ebi.picr.model.UPEntry) _resp;
 315       } catch (java.lang.Exception _exception)
 316       {
 317         return (uk.ac.ebi.picr.model.UPEntry) org.apache.axis.utils.JavaUtils
 318                 .convert(_resp, uk.ac.ebi.picr.model.UPEntry.class);
 319       }
 320     }
 321   }
 322
 323   public uk.ac.ebi.picr.model.UPEntry[] getUPIForAccession(
 324           java.lang.String accession, java.lang.String ac_version,
 325           java.lang.String[] searchDatabases, java.lang.String taxonId,
 326           boolean onlyActive) throws java.rmi.RemoteException
 327   {
 328     if (super.cachedEndpoint == null)
 329     {
 330       throw new org.apache.axis.NoEndPointException();
 331     }
 332     org.apache.axis.client.Call _call = createCall();
 333     _call.setOperation(_operations[1]);
 334     _call.setUseSOAPAction(true);
 335     _call.setSOAPActionURI("getUPIForAccession");
 336     _call.setEncodingStyle(null);
 337     _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
 338             Boolean.FALSE);
 339     _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
 340             Boolean.FALSE);
 341     _call.setSOAPVersion(
 342             org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
 343     _call.setOperationName(new javax.xml.namespace.QName(
 344             "http://www.ebi.ac.uk/picr/AccessionMappingService",
 345             "getUPIForAccession"));
 346
 347     setRequestHeaders(_call);
 348     setAttachments(_call);
 349     java.lang.Object _resp = _call
 350             .invoke(new java.lang.Object[]
 351             { accession, ac_version, searchDatabases, taxonId,
 352                 java.lang.Boolean.valueOf(onlyActive) });
 353
 354     if (_resp instanceof java.rmi.RemoteException)
 355     {
 356       throw (java.rmi.RemoteException) _resp;
 357     }
 358     else
 359     {
 360       extractAttachments(_call);
 361       try
 362       {
 363         return (uk.ac.ebi.picr.model.UPEntry[]) _resp;
 364       } catch (java.lang.Exception _exception)
 365       {
 366         return (uk.ac.ebi.picr.model.UPEntry[]) org.apache.axis.utils.JavaUtils
 367                 .convert(_resp, uk.ac.ebi.picr.model.UPEntry[].class);
 368       }
 369     }
 370   }
 371
 372   public java.lang.String[] getMappedDatabaseNames()
 373           throws java.rmi.RemoteException
 374   {
 375     if (super.cachedEndpoint == null)
 376     {
 377       throw new org.apache.axis.NoEndPointException();
 378     }
 379     org.apache.axis.client.Call _call = createCall();
 380     _call.setOperation(_operations[2]);
 381     _call.setUseSOAPAction(true);
 382     _call.setSOAPActionURI("getMappedDatabaseNames");
 383     _call.setEncodingStyle(null);
 384     _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
 385             Boolean.FALSE);
 386     _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
 387             Boolean.FALSE);
 388     _call.setSOAPVersion(
 389             org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
 390     _call.setOperationName(new javax.xml.namespace.QName(
 391             "http://www.ebi.ac.uk/picr/AccessionMappingService",
 392             "getMappedDatabaseNames"));
 393
 394     setRequestHeaders(_call);
 395     setAttachments(_call);
 396     java.lang.Object _resp = _call.invoke(new java.lang.Object[] {});
 397
 398     if (_resp instanceof java.rmi.RemoteException)
 399     {
 400       throw (java.rmi.RemoteException) _resp;
 401     }
 402     else
 403     {
 404       extractAttachments(_call);
 405       try
 406       {
 407         return (java.lang.String[]) _resp;
 408       } catch (java.lang.Exception _exception)
 409       {
 410         return (java.lang.String[]) org.apache.axis.utils.JavaUtils
 411                 .convert(_resp, java.lang.String[].class);
 412       }
 413     }
 414   }
 415
 416 }