</xs:complexContent>
</xs:complexType>
</xs:element>
+ <xs:element name="overview" minOccurs="0">
+ <xs:complexType>
+ <xs:attributeGroup ref="jv:swingwindow" />
+ <xs:attribute name="showHidden" type="xs:boolean" />
+ <xs:attribute name="residueColour" type="xs:int" />
+ <xs:attribute name="gapColour" type="xs:int" />
+ <xs:attribute name="hiddenColour" type="xs:int" />
+ <xs:attribute name="title" type="xs:string" />
+ </xs:complexType>
+ </xs:element>
</xs:sequence>
<xs:attributeGroup ref="jv:swingwindow" />
<xs:attribute name="conservationSelected" type="xs:boolean" />
viewport.setGatherViewsHere(true);
}
tabbedPane.setSelectedIndex(tabbedPane.getTabCount() - 1);
+
+ /*
+ * finally if new view has acquired an Overview window (because
+ * Preferences option to open Overview is selected), set its title
+ */
+ OverviewPanel ov = newap.overviewPanel;
+ if (ov != null)
+ {
+ String ttl = getOverviewTitle();
+ ((JInternalFrame) SwingUtilities
+ .getAncestorOfClass(JInternalFrame.class, ov))
+ .setTitle(ttl);
+ }
+
return newap;
}
}
/**
- * DOCUMENT ME!
+ * Opens an Overview panel for the alignment, unless one is open already
*
* @param e
- * DOCUMENT ME!
*/
@Override
public void overviewMenuItem_actionPerformed(ActionEvent e)
{
+ boolean showHiddenRegions = Cache.getDefault(Preferences.SHOW_OV_HIDDEN_AT_START,
+ false);
+ openOverviewPanel(showHiddenRegions);
+ }
+
+ public OverviewPanel openOverviewPanel(boolean showHidden)
+ {
if (alignPanel.overviewPanel != null)
{
- return;
+ return alignPanel.overviewPanel;
}
-
JInternalFrame frame = new JInternalFrame();
- final OverviewPanel overview = new OverviewPanel(alignPanel);
+ final OverviewPanel overview = new OverviewPanel(alignPanel, showHidden);
frame.setContentPane(overview);
- Desktop.addInternalFrame(frame, MessageManager
- .formatMessage("label.overview_params", new Object[]
- { this.getTitle() }), true, frame.getWidth(), frame.getHeight(),
+ String overviewTitle = getOverviewTitle();
+ Desktop.addInternalFrame(frame, overviewTitle, true, frame.getWidth(), frame.getHeight(),
true, true);
frame.pack();
frame.setLayer(JLayeredPane.PALETTE_LAYER);
+ final AlignmentPanel thePanel = this.alignPanel;
frame.addInternalFrameListener(
new javax.swing.event.InternalFrameAdapter()
{
javax.swing.event.InternalFrameEvent evt)
{
overview.dispose();
- alignPanel.setOverviewPanel(null);
+ thePanel.setOverviewPanel(null);
}
});
if (getKeyListeners().length > 0)
}
alignPanel.setOverviewPanel(overview);
+
+ return overview;
+ }
+
+ /**
+ * Constructs a title for the Overview window including the alignment window's
+ * title, and view name (if applicable)
+ *
+ * @return
+ */
+ public String getOverviewTitle()
+ {
+ String overviewTitle = MessageManager
+ .formatMessage("label.overview_params", new Object[]
+ { this.getTitle() });
+ String viewName = alignPanel.getViewName();
+ if (viewName != null)
+ {
+ overviewTitle += (" " + viewName);
+ }
+ return overviewTitle;
}
@Override
*/
package jalview.gui;
-import jalview.api.AlignViewportI;
-import jalview.bin.Cache;
-import jalview.renderer.OverviewRenderer;
-import jalview.renderer.OverviewResColourFinder;
-import jalview.viewmodel.OverviewDimensions;
-import jalview.viewmodel.seqfeatures.FeatureRendererModel;
-
import java.awt.Color;
import java.awt.Dimension;
import java.awt.Graphics;
import javax.swing.JPanel;
+import jalview.api.AlignViewportI;
+import jalview.bin.Cache;
+import jalview.renderer.OverviewRenderer;
+import jalview.renderer.OverviewResColourFinder;
+import jalview.viewmodel.OverviewDimensions;
+import jalview.viewmodel.seqfeatures.FeatureRendererModel;
+
public class OverviewCanvas extends JPanel
{
+ public static final Color OVERVIEW_DEFAULT_GAP = Color.lightGray;
+
+ public static final Color OVERVIEW_DEFAULT_LEGACY_GAP = Color.white;
+
+ public static final Color OVERVIEW_DEFAULT_RESIDUE = Color.white;
+
+ public static final Color OVERVIEW_DEFAULT_LEGACY_RESIDUE = Color.lightGray;
+
+ public static final Color OVERVIEW_DEFAULT_HIDDEN = Color.darkGray
+ .darker();
+
private static final Color TRANS_GREY = new Color(100, 100, 100, 25);
// This is set true if the alignment view changes whilst
boolean useLegacy = Cache.getDefault(Preferences.USE_LEGACY_GAP, false);
Color gapCol = Cache.getDefaultColour(Preferences.GAP_COLOUR,
- jalview.renderer.OverviewResColourFinder.OVERVIEW_DEFAULT_GAP);
+ OVERVIEW_DEFAULT_GAP);
Color hiddenCol = Cache.getDefaultColour(Preferences.HIDDEN_COLOUR,
- jalview.renderer.OverviewResColourFinder.OVERVIEW_DEFAULT_HIDDEN);
- cf = new OverviewResColourFinder(useLegacy, gapCol, hiddenCol);
+ OVERVIEW_DEFAULT_HIDDEN);
+ Color residueCol = useLegacy ? OVERVIEW_DEFAULT_LEGACY_RESIDUE : OVERVIEW_DEFAULT_RESIDUE;
+
+ cf = new OverviewResColourFinder(gapCol, residueCol, hiddenCol);
setSize(od.getWidth(), od.getHeight());
}
@Override
public void paintComponent(Graphics g)
{
- //super.paintComponent(g);
+ // super.paintComponent(g);
if (restart)
{
{
// if there is annotation, scale the alignment and annotation
// separately
- if (od.getGraphHeight() > 0
- && od.getSequencesHeight() > 0 // BH 2019
- )
+ if (od.getGraphHeight() > 0 && od.getSequencesHeight() > 0 // BH 2019
+ )
{
BufferedImage topImage = lastMiniMe.getSubimage(0, 0,
od.getWidth(), od.getSequencesHeight());
{
g.drawImage(lastMiniMe, 0, 0, getWidth(), getHeight(), this);
}
-
+
// draw the box
g.setColor(Color.red);
od.drawBox(g);
}
-
public void dispose()
{
dispose = true;
}
}
}
+
+ public Color getGapColour()
+ {
+ return cf.getGapColour();
+ }
+
+ public Color getHiddenColour()
+ {
+ return cf.getHiddenColour();
+ }
+
+ public Color getResidueColour()
+ {
+ return cf.getResidueColour();
+ }
+
+ /**
+ * Sets the colours to use for gaps, residues and hidden regions
+ *
+ * @param gaps
+ * @param residues
+ * @param hidden
+ */
+ public void setColours(Color gaps, Color residues, Color hidden)
+ {
+ cf = new OverviewResColourFinder(gaps, residues, hidden);
+ }
}
*/
package jalview.gui;
-import jalview.bin.Cache;
-import jalview.renderer.OverviewRenderer;
-import jalview.util.MessageManager;
-import jalview.util.Platform;
-import jalview.viewmodel.OverviewDimensions;
-import jalview.viewmodel.OverviewDimensionsHideHidden;
-import jalview.viewmodel.OverviewDimensionsShowHidden;
-import jalview.viewmodel.ViewportListenerI;
-
import java.awt.BorderLayout;
import java.awt.Cursor;
import java.awt.Dimension;
import javax.swing.JPopupMenu;
import javax.swing.SwingUtilities;
+import jalview.renderer.OverviewRenderer;
+import jalview.util.MessageManager;
+import jalview.util.Platform;
+import jalview.viewmodel.OverviewDimensions;
+import jalview.viewmodel.OverviewDimensionsHideHidden;
+import jalview.viewmodel.OverviewDimensionsShowHidden;
+import jalview.viewmodel.ViewportListenerI;
+
/**
* Panel displaying an overview of the full alignment, with an interactive box
* representing the viewport onto the alignment.
*
* @param alPanel
* The alignment panel which is shown in the overview panel
+ * @param isShowHidden TODO
*/
- public OverviewPanel(AlignmentPanel alPanel)
+ public OverviewPanel(AlignmentPanel alPanel, boolean isShowHidden)
{
this.av = alPanel.av;
this.ap = alPanel;
- showHidden = Cache.getDefault(Preferences.SHOW_OV_HIDDEN_AT_START,
- false);
+ showHidden = isShowHidden;
if (showHidden)
{
od = new OverviewDimensionsShowHidden(av.getRanges(),
od = null;
}
}
+
+ public boolean isShowHiddenRegions()
+ {
+ return showHidden;
+ }
+
+ public OverviewCanvas getCanvas()
+ {
+ return oviewCanvas;
+ }
}
* Set overview panel defaults
*/
gapColour.setBackground(Cache.getDefaultColour(GAP_COLOUR,
- jalview.renderer.OverviewResColourFinder.OVERVIEW_DEFAULT_GAP));
+ OverviewCanvas.OVERVIEW_DEFAULT_GAP));
hiddenColour.setBackground(Cache.getDefaultColour(HIDDEN_COLOUR,
- jalview.renderer.OverviewResColourFinder.OVERVIEW_DEFAULT_HIDDEN));
+ OverviewCanvas.OVERVIEW_DEFAULT_HIDDEN));
useLegacyGap.setSelected(Cache.getDefault(USE_LEGACY_GAP, false));
gapLabel.setEnabled(!useLegacyGap.isSelected());
gapColour.setEnabled(!useLegacyGap.isSelected());
boolean enabled = useLegacyGap.isSelected();
if (enabled)
{
- gapColour.setBackground(
- jalview.renderer.OverviewResColourFinder.OVERVIEW_DEFAULT_LEGACY_GAP);
+ gapColour.setBackground(OverviewCanvas.OVERVIEW_DEFAULT_LEGACY_GAP);
}
else
{
- gapColour.setBackground(
- jalview.renderer.OverviewResColourFinder.OVERVIEW_DEFAULT_GAP);
+ gapColour.setBackground(OverviewCanvas.OVERVIEW_DEFAULT_GAP);
}
gapColour.setEnabled(!enabled);
gapLabel.setEnabled(!enabled);
useLegacyGap.setSelected(false);
useLegacyGaps_actionPerformed(null);
showHiddenAtStart.setSelected(false);
- hiddenColour.setBackground(
- jalview.renderer.OverviewResColourFinder.OVERVIEW_DEFAULT_HIDDEN);
+ hiddenColour.setBackground(OverviewCanvas.OVERVIEW_DEFAULT_HIDDEN);
}
@Override
import java.util.StringTokenizer;
import java.util.Vector;
+import javax.swing.JInternalFrame;
import javax.swing.SwingUtilities;
import jalview.api.ComplexAlignFile;
import jalview.gui.AlignViewport;
import jalview.gui.Desktop;
import jalview.gui.JvOptionPane;
+import jalview.gui.OverviewPanel;
import jalview.json.binding.biojson.v1.ColourSchemeMapper;
import jalview.project.Jalview2XML;
import jalview.schemes.ColourSchemeI;
// that perform queries to find the 'current working alignment'
Desktop.addInternalFrame(alignFrame, title,
AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT);
+
+ OverviewPanel ov = alignFrame.alignPanel.getOverviewPanel();
+ if (ov != null)
+ {
+ /*
+ * Overview automatically opened with alignment
+ * - set its title now alignFrame title has been set
+ */
+ String ttl = alignFrame.getOverviewTitle();
+ ((JInternalFrame) SwingUtilities
+ .getAncestorOfClass(JInternalFrame.class, ov))
+ .setTitle(ttl);
+ }
+
}
try
import jalview.gui.Desktop;
import jalview.gui.JvOptionPane;
import jalview.gui.OOMWarning;
+import jalview.gui.OverviewPanel;
import jalview.gui.PCAPanel;
import jalview.gui.PaintRefresher;
import jalview.gui.SplitFrame;
import jalview.xml.binding.jalview.JalviewModel.Viewport;
import jalview.xml.binding.jalview.JalviewModel.Viewport.CalcIdParam;
import jalview.xml.binding.jalview.JalviewModel.Viewport.HiddenColumns;
+import jalview.xml.binding.jalview.JalviewModel.Viewport.Overview;
import jalview.xml.binding.jalview.JalviewUserColours;
import jalview.xml.binding.jalview.JalviewUserColours.Colour;
import jalview.xml.binding.jalview.MapListType.MapListFrom;
view.setStartRes(vpRanges.getStartRes());
view.setStartSeq(vpRanges.getStartSeq());
+ OverviewPanel ov = ap.getOverviewPanel();
+ if (ov != null)
+ {
+ Overview overview = new Overview();
+ JInternalFrame frame = (JInternalFrame) SwingUtilities
+ .getAncestorOfClass(JInternalFrame.class, ov);
+ overview.setTitle(frame.getTitle());
+ Rectangle bounds = frame.getBounds();
+ overview.setXpos(bounds.x);
+ overview.setYpos(bounds.y);
+ overview.setWidth(bounds.width);
+ overview.setHeight(bounds.height);
+ overview.setShowHidden(ov.isShowHiddenRegions());
+ overview.setGapColour(ov.getCanvas().getGapColour().getRGB());
+ overview.setResidueColour(ov.getCanvas().getResidueColour().getRGB());
+ overview.setHiddenColour(ov.getCanvas().getHiddenColour().getRGB());
+ view.setOverview(overview);
+ }
if (av.getGlobalColourScheme() instanceof jalview.schemes.UserColourScheme)
{
view.setBgColour(setUserColourScheme(av.getGlobalColourScheme(),
}
/*
- * Load any trees, PDB structures and viewers
+ * Load any trees, PDB structures and viewers, Overview
*
* Not done if flag is false (when this method is used for New View)
*/
loadPCAViewers(jalviewModel, ap);
loadPDBStructures(jprovider, jseqs, af, ap);
loadRnaViewers(jprovider, jseqs, ap);
+ loadOverview(view, af);
}
// and finally return.
return af;
}
/**
+ * Load Overview window, restoring colours, 'show hidden regions' flag, title
+ * and geometry as saved
+ *
+ * @param view
+ * @param af
+ */
+ protected void loadOverview(Viewport view, AlignFrame af)
+ {
+ Overview overview = view.getOverview();
+ if (overview != null)
+ {
+ OverviewPanel overviewPanel = af
+ .openOverviewPanel(overview.isShowHidden());
+ JInternalFrame frame = (JInternalFrame) SwingUtilities
+ .getAncestorOfClass(JInternalFrame.class, overviewPanel);
+ frame.setTitle(overview.getTitle());
+ frame.setBounds(overview.getXpos(), overview.getYpos(),
+ overview.getWidth(), overview.getHeight());
+ Color gap = new Color(overview.getGapColour());
+ Color residue = new Color(overview.getResidueColour());
+ Color hidden = new Color(overview.getHiddenColour());
+ overviewPanel.getCanvas().setColours(gap, residue, hidden);
+ }
+ }
+
+ /**
* Instantiate and link any saved RNA (Varna) viewers. The state of the Varna
* panel is restored from separate jar entries, two (gapped and trimmed) per
* sequence and secondary structure.
{
splitFrameCandidates.put(view, af);
}
+
return af;
}
int getColumnColourFromSequence(SequenceGroup[] allGroups,
SequenceI seq, int lastcol)
{
- Color color = resColFinder.GAP_COLOUR;
+ Color color = resColFinder.gapColour;
if ((seq != null) && (seq.getLength() > lastcol))
{
*/
package jalview.renderer;
+import java.awt.Color;
+
import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
import jalview.util.Comparison;
-import java.awt.Color;
-
public class OverviewResColourFinder extends ResidueColourFinder
{
- final Color GAP_COLOUR; // default colour to use at gaps
-
- final Color RESIDUE_COLOUR; // default colour to use at residues
-
- final Color HIDDEN_COLOUR; // colour for hidden regions
-
- boolean useLegacy = false;
-
- public static final Color OVERVIEW_DEFAULT_GAP = Color.lightGray;
+ /*
+ * colour for gaps (unless overridden by colour scheme)
+ * - as set in Preferences, _or_ read from a project file
+ */
+ Color gapColour;
- public static final Color OVERVIEW_DEFAULT_LEGACY_GAP = Color.white;
+ /*
+ * colour for residues if no colour scheme set (before feature colouring)
+ * - as set in Preferences, _or_ read from a project file
+ */
+ Color residueColour;
- public static final Color OVERVIEW_DEFAULT_HIDDEN = Color.darkGray
- .darker();
+ /*
+ * colour for hidden regions
+ * - as set in Preferences, _or_ read from a project file
+ */
+ Color hiddenColour;
/**
* Constructor without colour settings (used by applet)
+ * @deprecated
*/
+ @Deprecated
public OverviewResColourFinder()
{
- this(false, OVERVIEW_DEFAULT_GAP, OVERVIEW_DEFAULT_HIDDEN);
+ this(Color.lightGray, Color.white, Color.darkGray.darker());
}
/**
- * Constructor with colour settings
+ * Constructor given default colours for gaps, residues and hidden regions
*
- * @param useLegacyColouring
- * whether to use legacy gap colouring (white gaps, grey residues)
- * @param gapCol
- * gap colour if not legacy
- * @param hiddenCol
- * hidden region colour (transparency applied by rendering code)
+ * @param gaps
+ * @param residues
+ * @param hidden
*/
- public OverviewResColourFinder(boolean useLegacyColouring, Color gapCol,
- Color hiddenCol)
+ public OverviewResColourFinder(Color gaps, Color residues, Color hidden)
{
- if (useLegacyColouring)
- {
- GAP_COLOUR = Color.white;
- RESIDUE_COLOUR = Color.lightGray;
- HIDDEN_COLOUR = hiddenCol;
- }
- else
- {
- GAP_COLOUR = gapCol;
- RESIDUE_COLOUR = Color.white;
- HIDDEN_COLOUR = hiddenCol;
- }
+ gapColour = gaps;
+ residueColour = residues;
+ hiddenColour = hidden;
}
@Override
public Color getBoxColour(ResidueShaderI shader, SequenceI seq, int i)
{
- Color resBoxColour = RESIDUE_COLOUR;
+ Color resBoxColour = residueColour;
char currentChar = seq.getCharAt(i);
// In the overview window, gaps are coloured grey, unless the colour scheme
if (Comparison.isGap(currentChar)
&& (!shader.getColourScheme().hasGapColour()))
{
- resBoxColour = GAP_COLOUR;
+ resBoxColour = gapColour;
}
else
{
}
else if (Comparison.isGap(currentChar))
{
- resBoxColour = GAP_COLOUR;
+ resBoxColour = gapColour;
}
return resBoxColour;
*/
@Override
protected Color getResidueBoxColour(boolean showBoxes,
- ResidueShaderI shader,
- SequenceGroup[] allGroups, SequenceI seq, int i)
+ ResidueShaderI shader, SequenceGroup[] allGroups, SequenceI seq,
+ int i)
{
ResidueShaderI currentShader;
SequenceGroup currentSequenceGroup = getCurrentSequenceGroup(allGroups,
}
/**
- * Supply hidden colour
+ * Returns the colour used for hidden regions
+ *
+ * @return
+ */
+ public Color getHiddenColour()
+ {
+ return hiddenColour;
+ }
+
+ /**
+ * Returns the colour used for gaps, if not overridden by the alignment colour
+ * scheme
+ *
+ * @return
+ */
+ public Color getGapColour()
+ {
+ return gapColour;
+ }
+
+ /**
+ * Returns the colour used for residues (before applying any feature
+ * colouring) if there is no alignment colour scheme
*
- * @return colour of hidden regions
+ * @return
*/
- protected Color getHiddenColour()
+ public Color getResidueColour()
{
- return HIDDEN_COLOUR;
+ return residueColour;
}
}
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.09.14 at 02:46:00 PM BST
+// Generated on: 2022.02.07 at 04:45:21 PM GMT
//
/**
- * <p>Java class for EntrySetType complex type.
+ * <p>Java class for EntrySetType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="EntrySetType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence maxOccurs="unbounded">
- * <element name="entry" type="{}EntryType"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="EntrySetType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence maxOccurs="unbounded"&gt;
+ * &lt;element name="entry" type="{}EntryType"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the entry property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the entry property.
+ * This is why there is not a <CODE>set</CODE> method for the entry property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEntry().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EntryType }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.09.14 at 02:46:00 PM BST
+// Generated on: 2022.02.07 at 04:45:21 PM GMT
//
/**
- * <p>Java class for EntryType complex type.
+ * <p>Java class for EntryType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="EntryType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="secondaryAccession" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="projectAccession" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="description" type="{http://www.w3.org/2001/XMLSchema}string"/>
- * <element name="comment" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="keyword" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="reference" maxOccurs="unbounded" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="title" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="author" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="applicant" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="consortium" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="submissionDate" type="{http://www.w3.org/2001/XMLSchema}date" minOccurs="0"/>
- * <element name="journal" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="year" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="volume" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="issue" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="firstPage" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="lastPage" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="comment" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="referenceLocation" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/>
- * </sequence>
- * <attribute name="type" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="submission"/>
- * <enumeration value="book"/>
- * <enumeration value="article"/>
- * <enumeration value="patent"/>
- * <enumeration value="thesis"/>
- * <enumeration value="unpublished"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="number" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="location" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="feature" maxOccurs="unbounded" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="taxon" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="lineage" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="taxon" maxOccurs="unbounded">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * <attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="commonName" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="taxId" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="qualifier" maxOccurs="unbounded" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="value" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * </sequence>
- * <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="location" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="assembly" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="range" maxOccurs="unbounded">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="contig" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <choice maxOccurs="unbounded" minOccurs="0">
- * <element name="range">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="gap">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="length" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="unknownLength" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </choice>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="sequence" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * </sequence>
- * <attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="entryVersion" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="dataClass" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="taxonomicDivision" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="moleculeType" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="sequenceLength" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="topology" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="circular"/>
- * <enumeration value="linear"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="firstPublic" type="{http://www.w3.org/2001/XMLSchema}date" />
- * <attribute name="firstPublicRelease" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="lastUpdated" type="{http://www.w3.org/2001/XMLSchema}date" />
- * <attribute name="lastUpdatedRelease" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="EntryType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="secondaryAccession" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="projectAccession" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="description" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;
+ * &lt;element name="comment" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="keyword" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="reference" maxOccurs="unbounded" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="title" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="author" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="applicant" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="consortium" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="submissionDate" type="{http://www.w3.org/2001/XMLSchema}date" minOccurs="0"/&gt;
+ * &lt;element name="journal" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="year" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="volume" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="issue" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="firstPage" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="lastPage" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="comment" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="referenceLocation" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="type" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="submission"/&gt;
+ * &lt;enumeration value="book"/&gt;
+ * &lt;enumeration value="article"/&gt;
+ * &lt;enumeration value="patent"/&gt;
+ * &lt;enumeration value="thesis"/&gt;
+ * &lt;enumeration value="unpublished"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="number" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="location" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="feature" maxOccurs="unbounded" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="taxon" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="lineage" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="taxon" maxOccurs="unbounded"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="commonName" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="taxId" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="qualifier" maxOccurs="unbounded" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="value" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="location" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;element name="assembly" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="range" maxOccurs="unbounded"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;element name="contig" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;choice maxOccurs="unbounded" minOccurs="0"&gt;
+ * &lt;element name="range"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;element name="gap"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="length" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="unknownLength" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/choice&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;element name="sequence" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="entryVersion" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="dataClass" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="taxonomicDivision" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="moleculeType" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="sequenceLength" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="topology" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="circular"/&gt;
+ * &lt;enumeration value="linear"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="firstPublic" type="{http://www.w3.org/2001/XMLSchema}date" /&gt;
+ * &lt;attribute name="firstPublicRelease" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="lastUpdated" type="{http://www.w3.org/2001/XMLSchema}date" /&gt;
+ * &lt;attribute name="lastUpdatedRelease" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the secondaryAccession property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the secondaryAccession property.
+ * This is why there is not a <CODE>set</CODE> method for the secondaryAccession property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getSecondaryAccession().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link String }
*
/**
* Gets the value of the projectAccession property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the projectAccession property.
+ * This is why there is not a <CODE>set</CODE> method for the projectAccession property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getProjectAccession().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link String }
*
/**
* Gets the value of the keyword property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the keyword property.
+ * This is why there is not a <CODE>set</CODE> method for the keyword property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getKeyword().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link String }
*
/**
* Gets the value of the reference property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the reference property.
+ * This is why there is not a <CODE>set</CODE> method for the reference property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getReference().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EntryType.Reference }
*
/**
* Gets the value of the xref property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the xref property.
+ * This is why there is not a <CODE>set</CODE> method for the xref property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getXref().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link XrefType }
*
/**
* Gets the value of the feature property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the feature property.
+ * This is why there is not a <CODE>set</CODE> method for the feature property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getFeature().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EntryType.Feature }
*
/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="range" maxOccurs="unbounded">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="range" maxOccurs="unbounded"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the range property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the range property.
+ * This is why there is not a <CODE>set</CODE> method for the range property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getRange().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EntryType.Assembly.Range }
*
/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <choice maxOccurs="unbounded" minOccurs="0">
- * <element name="range">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="gap">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="length" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="unknownLength" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </choice>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;choice maxOccurs="unbounded" minOccurs="0"&gt;
+ * &lt;element name="range"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;element name="gap"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="length" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="unknownLength" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/choice&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the rangeOrGap property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the rangeOrGap property.
+ * This is why there is not a <CODE>set</CODE> method for the rangeOrGap property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getRangeOrGap().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EntryType.Contig.Range }
* {@link EntryType.Contig.Gap }
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="length" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="unknownLength" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="length" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="unknownLength" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="taxon" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="lineage" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="taxon" maxOccurs="unbounded">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * <attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="commonName" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="taxId" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="qualifier" maxOccurs="unbounded" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="value" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * </sequence>
- * <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="location" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="taxon" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="lineage" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="taxon" maxOccurs="unbounded"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="commonName" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="taxId" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="qualifier" maxOccurs="unbounded" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="value" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="location" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the xref property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the xref property.
+ * This is why there is not a <CODE>set</CODE> method for the xref property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getXref().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link XrefType }
*
/**
* Gets the value of the qualifier property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the qualifier property.
+ * This is why there is not a <CODE>set</CODE> method for the qualifier property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getQualifier().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EntryType.Feature.Qualifier }
*
/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="lineage" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="taxon" maxOccurs="unbounded">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * <attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="commonName" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="taxId" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="lineage" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="taxon" maxOccurs="unbounded"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="commonName" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="taxId" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="taxon" maxOccurs="unbounded">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="taxon" maxOccurs="unbounded"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the taxon property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the taxon property.
+ * This is why there is not a <CODE>set</CODE> method for the taxon property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getTaxon().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EntryType.Feature.FeatureTaxon.Lineage.Taxon }
*
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="value" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * </sequence>
- * <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="value" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="title" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="author" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="applicant" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="consortium" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="submissionDate" type="{http://www.w3.org/2001/XMLSchema}date" minOccurs="0"/>
- * <element name="journal" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="year" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="volume" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="issue" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="firstPage" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="lastPage" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="comment" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="referenceLocation" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/>
- * </sequence>
- * <attribute name="type" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="submission"/>
- * <enumeration value="book"/>
- * <enumeration value="article"/>
- * <enumeration value="patent"/>
- * <enumeration value="thesis"/>
- * <enumeration value="unpublished"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="number" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="location" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="title" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="author" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="applicant" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="consortium" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="submissionDate" type="{http://www.w3.org/2001/XMLSchema}date" minOccurs="0"/&gt;
+ * &lt;element name="journal" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="year" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="volume" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="issue" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="firstPage" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="lastPage" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="comment" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="referenceLocation" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="type" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="submission"/&gt;
+ * &lt;enumeration value="book"/&gt;
+ * &lt;enumeration value="article"/&gt;
+ * &lt;enumeration value="patent"/&gt;
+ * &lt;enumeration value="thesis"/&gt;
+ * &lt;enumeration value="unpublished"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="number" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;attribute name="location" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the author property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the author property.
+ * This is why there is not a <CODE>set</CODE> method for the author property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getAuthor().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link String }
*
/**
* Gets the value of the applicant property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the applicant property.
+ * This is why there is not a <CODE>set</CODE> method for the applicant property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getApplicant().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link String }
*
/**
* Gets the value of the xref property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the xref property.
+ * This is why there is not a <CODE>set</CODE> method for the xref property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getXref().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link XrefType }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.09.14 at 02:46:00 PM BST
+// Generated on: 2022.02.07 at 04:45:21 PM GMT
//
* This object contains factory methods for each
* Java content interface and Java element interface
* generated in the jalview.xml.binding.embl package.
- * <p>An ObjectFactory allows you to programatically
+ * <p>An ObjectFactory allows you to programatically
* construct new instances of the Java representation
* for XML content. The Java representation of XML
* content can consist of schema derived interfaces
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.09.14 at 02:46:00 PM BST
+// Generated on: 2022.02.07 at 04:45:21 PM GMT
//
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <choice>
- * <element name="entrySet" type="{}EntrySetType"/>
- * <element name="entry" type="{}EntryType"/>
- * </choice>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;choice&gt;
+ * &lt;element name="entrySet" type="{}EntrySetType"/&gt;
+ * &lt;element name="entry" type="{}EntryType"/&gt;
+ * &lt;/choice&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.09.14 at 02:46:00 PM BST
+// Generated on: 2022.02.07 at 04:45:21 PM GMT
//
/**
* Database cross-reference.
*
- * <p>Java class for XrefType complex type.
+ * <p>Java class for XrefType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="XrefType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="db" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="secondaryId" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="XrefType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="db" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="secondaryId" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
* &lt;/complexContent&gt;
* &lt;/complexType&gt;
* &lt;/element&gt;
+ * &lt;element name="overview" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attGroup ref="{www.jalview.org}swingwindow"/&gt;
+ * &lt;attribute name="showHidden" type="{http://www.w3.org/2001/XMLSchema}boolean" /&gt;
+ * &lt;attribute name="residueColour" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
+ * &lt;attribute name="gapColour" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
+ * &lt;attribute name="hiddenColour" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
+ * &lt;attribute name="title" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
* &lt;/sequence&gt;
* &lt;attGroup ref="{www.jalview.org}swingwindow"/&gt;
* &lt;attribute name="conservationSelected" type="{http://www.w3.org/2001/XMLSchema}boolean" /&gt;
* &lt;/complexContent&gt;
* &lt;/complexType&gt;
* &lt;/element&gt;
+ * &lt;element name="overview" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attGroup ref="{www.jalview.org}swingwindow"/&gt;
+ * &lt;attribute name="showHidden" type="{http://www.w3.org/2001/XMLSchema}boolean" /&gt;
+ * &lt;attribute name="residueColour" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
+ * &lt;attribute name="gapColour" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
+ * &lt;attribute name="hiddenColour" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
+ * &lt;attribute name="title" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
* &lt;/sequence&gt;
* &lt;attGroup ref="{www.jalview.org}swingwindow"/&gt;
* &lt;attribute name="conservationSelected" type="{http://www.w3.org/2001/XMLSchema}boolean" /&gt;
@XmlType(name = "", propOrder = {
"annotationColours",
"hiddenColumns",
- "calcIdParam"
+ "calcIdParam",
+ "overview"
})
public static class Viewport {
protected List<JalviewModel.Viewport.HiddenColumns> hiddenColumns;
@XmlElement(namespace = "www.jalview.org")
protected List<JalviewModel.Viewport.CalcIdParam> calcIdParam;
+ @XmlElement(namespace = "www.jalview.org")
+ protected JalviewModel.Viewport.Overview overview;
@XmlAttribute(name = "conservationSelected")
protected Boolean conservationSelected;
@XmlAttribute(name = "pidSelected")
}
/**
+ * Gets the value of the overview property.
+ *
+ * @return
+ * possible object is
+ * {@link JalviewModel.Viewport.Overview }
+ *
+ */
+ public JalviewModel.Viewport.Overview getOverview() {
+ return overview;
+ }
+
+ /**
+ * Sets the value of the overview property.
+ *
+ * @param value
+ * allowed object is
+ * {@link JalviewModel.Viewport.Overview }
+ *
+ */
+ public void setOverview(JalviewModel.Viewport.Overview value) {
+ this.overview = value;
+ }
+
+ /**
* Gets the value of the conservationSelected property.
*
* @return
}
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attGroup ref="{www.jalview.org}swingwindow"/&gt;
+ * &lt;attribute name="showHidden" type="{http://www.w3.org/2001/XMLSchema}boolean" /&gt;
+ * &lt;attribute name="residueColour" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
+ * &lt;attribute name="gapColour" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
+ * &lt;attribute name="hiddenColour" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
+ * &lt;attribute name="title" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Overview {
+
+ @XmlAttribute(name = "showHidden")
+ protected Boolean showHidden;
+ @XmlAttribute(name = "residueColour")
+ protected Integer residueColour;
+ @XmlAttribute(name = "gapColour")
+ protected Integer gapColour;
+ @XmlAttribute(name = "hiddenColour")
+ protected Integer hiddenColour;
+ @XmlAttribute(name = "title")
+ protected String title;
+ @XmlAttribute(name = "width")
+ protected Integer width;
+ @XmlAttribute(name = "height")
+ protected Integer height;
+ @XmlAttribute(name = "xpos")
+ protected Integer xpos;
+ @XmlAttribute(name = "ypos")
+ protected Integer ypos;
+
+ /**
+ * Gets the value of the showHidden property.
+ *
+ * @return
+ * possible object is
+ * {@link Boolean }
+ *
+ */
+ public Boolean isShowHidden() {
+ return showHidden;
+ }
+
+ /**
+ * Sets the value of the showHidden property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Boolean }
+ *
+ */
+ public void setShowHidden(Boolean value) {
+ this.showHidden = value;
+ }
+
+ /**
+ * Gets the value of the residueColour property.
+ *
+ * @return
+ * possible object is
+ * {@link Integer }
+ *
+ */
+ public Integer getResidueColour() {
+ return residueColour;
+ }
+
+ /**
+ * Sets the value of the residueColour property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Integer }
+ *
+ */
+ public void setResidueColour(Integer value) {
+ this.residueColour = value;
+ }
+
+ /**
+ * Gets the value of the gapColour property.
+ *
+ * @return
+ * possible object is
+ * {@link Integer }
+ *
+ */
+ public Integer getGapColour() {
+ return gapColour;
+ }
+
+ /**
+ * Sets the value of the gapColour property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Integer }
+ *
+ */
+ public void setGapColour(Integer value) {
+ this.gapColour = value;
+ }
+
+ /**
+ * Gets the value of the hiddenColour property.
+ *
+ * @return
+ * possible object is
+ * {@link Integer }
+ *
+ */
+ public Integer getHiddenColour() {
+ return hiddenColour;
+ }
+
+ /**
+ * Sets the value of the hiddenColour property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Integer }
+ *
+ */
+ public void setHiddenColour(Integer value) {
+ this.hiddenColour = value;
+ }
+
+ /**
+ * Gets the value of the title property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getTitle() {
+ return title;
+ }
+
+ /**
+ * Sets the value of the title property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setTitle(String value) {
+ this.title = value;
+ }
+
+ /**
+ * Gets the value of the width property.
+ *
+ * @return
+ * possible object is
+ * {@link Integer }
+ *
+ */
+ public Integer getWidth() {
+ return width;
+ }
+
+ /**
+ * Sets the value of the width property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Integer }
+ *
+ */
+ public void setWidth(Integer value) {
+ this.width = value;
+ }
+
+ /**
+ * Gets the value of the height property.
+ *
+ * @return
+ * possible object is
+ * {@link Integer }
+ *
+ */
+ public Integer getHeight() {
+ return height;
+ }
+
+ /**
+ * Sets the value of the height property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Integer }
+ *
+ */
+ public void setHeight(Integer value) {
+ this.height = value;
+ }
+
+ /**
+ * Gets the value of the xpos property.
+ *
+ * @return
+ * possible object is
+ * {@link Integer }
+ *
+ */
+ public Integer getXpos() {
+ return xpos;
+ }
+
+ /**
+ * Sets the value of the xpos property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Integer }
+ *
+ */
+ public void setXpos(Integer value) {
+ this.xpos = value;
+ }
+
+ /**
+ * Gets the value of the ypos property.
+ *
+ * @return
+ * possible object is
+ * {@link Integer }
+ *
+ */
+ public Integer getYpos() {
+ return ypos;
+ }
+
+ /**
+ * Sets the value of the ypos property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Integer }
+ *
+ */
+ public void setYpos(Integer value) {
+ this.ypos = value;
+ }
+
+ }
+
}
}
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
}
/**
+ * Create an instance of {@link JalviewModel.Viewport.Overview }
+ *
+ */
+ public JalviewModel.Viewport.Overview createJalviewModelViewportOverview() {
+ return new JalviewModel.Viewport.Overview();
+ }
+
+ /**
* Create an instance of {@link JalviewModel.JSeq.RnaViewer.SecondaryStructure }
*
*/
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2021.08.30 at 11:05:22 AM BST
+// Generated on: 2022.02.07 at 04:44:47 PM GMT
//
@javax.xml.bind.annotation.XmlSchema(namespace = "www.vamsas.ac.uk/jalview/version2", elementFormDefault = javax.xml.bind.annotation.XmlNsForm.QUALIFIED)
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
* Describes different types of citations.
* Equivalent to the flat file RX-, RG-, RA-, RT- and RL-lines.
*
- * <p>Java class for citationType complex type.
+ * <p>Java class for citationType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="citationType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="title" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="editorList" type="{http://uniprot.org/uniprot}nameListType" minOccurs="0"/>
- * <element name="authorList" type="{http://uniprot.org/uniprot}nameListType" minOccurs="0"/>
- * <element name="locator" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType" maxOccurs="unbounded" minOccurs="0"/>
- * </sequence>
- * <attribute name="type" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="book"/>
- * <enumeration value="journal article"/>
- * <enumeration value="online journal article"/>
- * <enumeration value="patent"/>
- * <enumeration value="submission"/>
- * <enumeration value="thesis"/>
- * <enumeration value="unpublished observations"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="date">
- * <simpleType>
- * <union memberTypes=" {http://www.w3.org/2001/XMLSchema}date {http://www.w3.org/2001/XMLSchema}gYearMonth {http://www.w3.org/2001/XMLSchema}gYear">
- * </union>
- * </simpleType>
- * </attribute>
- * <attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="volume" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="first" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="last" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="publisher" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="city" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="db" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="number" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="institute" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="country" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="citationType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="title" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="editorList" type="{http://uniprot.org/uniprot}nameListType" minOccurs="0"/&gt;
+ * &lt;element name="authorList" type="{http://uniprot.org/uniprot}nameListType" minOccurs="0"/&gt;
+ * &lt;element name="locator" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="type" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="book"/&gt;
+ * &lt;enumeration value="journal article"/&gt;
+ * &lt;enumeration value="online journal article"/&gt;
+ * &lt;enumeration value="patent"/&gt;
+ * &lt;enumeration value="submission"/&gt;
+ * &lt;enumeration value="thesis"/&gt;
+ * &lt;enumeration value="unpublished observations"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="date"&gt;
+ * &lt;simpleType&gt;
+ * &lt;union memberTypes=" {http://www.w3.org/2001/XMLSchema}date {http://www.w3.org/2001/XMLSchema}gYearMonth {http://www.w3.org/2001/XMLSchema}gYear"&gt;
+ * &lt;/union&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="volume" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="first" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="last" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="publisher" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="city" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="db" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="number" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="institute" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="country" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the dbReference property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the dbReference property.
+ * This is why there is not a <CODE>set</CODE> method for the dbReference property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getDbReference().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link DbReferenceType }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
* Describes a cofactor.
*
- * <p>Java class for cofactorType complex type.
+ * <p>Java class for cofactorType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="cofactorType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="name" type="{http://www.w3.org/2001/XMLSchema}string"/>
- * <element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType"/>
- * </sequence>
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="cofactorType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="name" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;
+ * &lt;element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
* Describes different types of general annotations.
* Equivalent to the flat file CC-line.
*
- * <p>Java class for commentType complex type.
+ * <p>Java class for commentType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="commentType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="molecule" type="{http://uniprot.org/uniprot}moleculeType" minOccurs="0"/>
- * <choice minOccurs="0">
- * <group ref="{http://uniprot.org/uniprot}bpcCommentGroup"/>
- * <sequence>
- * <element name="reaction" type="{http://uniprot.org/uniprot}reactionType"/>
- * <element name="physiologicalReaction" type="{http://uniprot.org/uniprot}physiologicalReactionType" maxOccurs="2" minOccurs="0"/>
- * </sequence>
- * <sequence>
- * <element name="cofactor" type="{http://uniprot.org/uniprot}cofactorType" maxOccurs="unbounded"/>
- * </sequence>
- * <sequence>
- * <element name="subcellularLocation" type="{http://uniprot.org/uniprot}subcellularLocationType" maxOccurs="unbounded"/>
- * </sequence>
- * <element name="conflict">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="sequence" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="resource" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="EMBL-CDS"/>
- * <enumeration value="EMBL"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}int" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * <attribute name="type" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="frameshift"/>
- * <enumeration value="erroneous initiation"/>
- * <enumeration value="erroneous termination"/>
- * <enumeration value="erroneous gene model prediction"/>
- * <enumeration value="erroneous translation"/>
- * <enumeration value="miscellaneous discrepancy"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <sequence>
- * <element name="link" maxOccurs="unbounded" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="uri" use="required" type="{http://www.w3.org/2001/XMLSchema}anyURI" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * <sequence>
- * <element name="event" type="{http://uniprot.org/uniprot}eventType" maxOccurs="4"/>
- * <element name="isoform" type="{http://uniprot.org/uniprot}isoformType" maxOccurs="unbounded" minOccurs="0"/>
- * </sequence>
- * <sequence>
- * <element name="interactant" type="{http://uniprot.org/uniprot}interactantType" maxOccurs="2" minOccurs="2"/>
- * <element name="organismsDiffer" type="{http://www.w3.org/2001/XMLSchema}boolean"/>
- * <element name="experiments" type="{http://www.w3.org/2001/XMLSchema}int"/>
- * </sequence>
- * <element name="disease">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="name" type="{http://www.w3.org/2001/XMLSchema}string"/>
- * <element name="acronym" type="{http://www.w3.org/2001/XMLSchema}string"/>
- * <element name="description" type="{http://www.w3.org/2001/XMLSchema}string"/>
- * <element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType"/>
- * </sequence>
- * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </choice>
- * <element name="location" type="{http://uniprot.org/uniprot}locationType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
- * </sequence>
- * <attribute name="type" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="allergen"/>
- * <enumeration value="alternative products"/>
- * <enumeration value="biotechnology"/>
- * <enumeration value="biophysicochemical properties"/>
- * <enumeration value="catalytic activity"/>
- * <enumeration value="caution"/>
- * <enumeration value="cofactor"/>
- * <enumeration value="developmental stage"/>
- * <enumeration value="disease"/>
- * <enumeration value="domain"/>
- * <enumeration value="disruption phenotype"/>
- * <enumeration value="activity regulation"/>
- * <enumeration value="function"/>
- * <enumeration value="induction"/>
- * <enumeration value="miscellaneous"/>
- * <enumeration value="pathway"/>
- * <enumeration value="pharmaceutical"/>
- * <enumeration value="polymorphism"/>
- * <enumeration value="PTM"/>
- * <enumeration value="RNA editing"/>
- * <enumeration value="similarity"/>
- * <enumeration value="subcellular location"/>
- * <enumeration value="sequence caution"/>
- * <enumeration value="subunit"/>
- * <enumeration value="tissue specificity"/>
- * <enumeration value="toxic dose"/>
- * <enumeration value="online information"/>
- * <enumeration value="mass spectrometry"/>
- * <enumeration value="interaction"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="locationType" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="mass" type="{http://www.w3.org/2001/XMLSchema}float" />
- * <attribute name="error" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="method" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="commentType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="molecule" type="{http://uniprot.org/uniprot}moleculeType" minOccurs="0"/&gt;
+ * &lt;choice minOccurs="0"&gt;
+ * &lt;group ref="{http://uniprot.org/uniprot}bpcCommentGroup"/&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="reaction" type="{http://uniprot.org/uniprot}reactionType"/&gt;
+ * &lt;element name="physiologicalReaction" type="{http://uniprot.org/uniprot}physiologicalReactionType" maxOccurs="2" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="cofactor" type="{http://uniprot.org/uniprot}cofactorType" maxOccurs="unbounded"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="subcellularLocation" type="{http://uniprot.org/uniprot}subcellularLocationType" maxOccurs="unbounded"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;element name="conflict"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="sequence" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="resource" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="EMBL-CDS"/&gt;
+ * &lt;enumeration value="EMBL"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="version" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="type" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="frameshift"/&gt;
+ * &lt;enumeration value="erroneous initiation"/&gt;
+ * &lt;enumeration value="erroneous termination"/&gt;
+ * &lt;enumeration value="erroneous gene model prediction"/&gt;
+ * &lt;enumeration value="erroneous translation"/&gt;
+ * &lt;enumeration value="miscellaneous discrepancy"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="link" maxOccurs="unbounded" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="uri" use="required" type="{http://www.w3.org/2001/XMLSchema}anyURI" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/sequence&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="event" type="{http://uniprot.org/uniprot}eventType" maxOccurs="4"/&gt;
+ * &lt;element name="isoform" type="{http://uniprot.org/uniprot}isoformType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="interactant" type="{http://uniprot.org/uniprot}interactantType" maxOccurs="2" minOccurs="2"/&gt;
+ * &lt;element name="organismsDiffer" type="{http://www.w3.org/2001/XMLSchema}boolean"/&gt;
+ * &lt;element name="experiments" type="{http://www.w3.org/2001/XMLSchema}int"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;element name="disease"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="name" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;
+ * &lt;element name="acronym" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;
+ * &lt;element name="description" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;
+ * &lt;element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/choice&gt;
+ * &lt;element name="location" type="{http://uniprot.org/uniprot}locationType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="type" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="allergen"/&gt;
+ * &lt;enumeration value="alternative products"/&gt;
+ * &lt;enumeration value="biotechnology"/&gt;
+ * &lt;enumeration value="biophysicochemical properties"/&gt;
+ * &lt;enumeration value="catalytic activity"/&gt;
+ * &lt;enumeration value="caution"/&gt;
+ * &lt;enumeration value="cofactor"/&gt;
+ * &lt;enumeration value="developmental stage"/&gt;
+ * &lt;enumeration value="disease"/&gt;
+ * &lt;enumeration value="domain"/&gt;
+ * &lt;enumeration value="disruption phenotype"/&gt;
+ * &lt;enumeration value="activity regulation"/&gt;
+ * &lt;enumeration value="function"/&gt;
+ * &lt;enumeration value="induction"/&gt;
+ * &lt;enumeration value="miscellaneous"/&gt;
+ * &lt;enumeration value="pathway"/&gt;
+ * &lt;enumeration value="pharmaceutical"/&gt;
+ * &lt;enumeration value="polymorphism"/&gt;
+ * &lt;enumeration value="PTM"/&gt;
+ * &lt;enumeration value="RNA editing"/&gt;
+ * &lt;enumeration value="similarity"/&gt;
+ * &lt;enumeration value="subcellular location"/&gt;
+ * &lt;enumeration value="sequence caution"/&gt;
+ * &lt;enumeration value="subunit"/&gt;
+ * &lt;enumeration value="tissue specificity"/&gt;
+ * &lt;enumeration value="toxic dose"/&gt;
+ * &lt;enumeration value="online information"/&gt;
+ * &lt;enumeration value="mass spectrometry"/&gt;
+ * &lt;enumeration value="interaction"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="locationType" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="mass" type="{http://www.w3.org/2001/XMLSchema}float" /&gt;
+ * &lt;attribute name="error" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="method" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the physiologicalReaction property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the physiologicalReaction property.
+ * This is why there is not a <CODE>set</CODE> method for the physiologicalReaction property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getPhysiologicalReaction().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link PhysiologicalReactionType }
*
/**
* Gets the value of the cofactor property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the cofactor property.
+ * This is why there is not a <CODE>set</CODE> method for the cofactor property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getCofactor().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link CofactorType }
*
/**
* Gets the value of the subcellularLocation property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the subcellularLocation property.
+ * This is why there is not a <CODE>set</CODE> method for the subcellularLocation property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getSubcellularLocation().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link SubcellularLocationType }
*
/**
* Gets the value of the link property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the link property.
+ * This is why there is not a <CODE>set</CODE> method for the link property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getLink().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link CommentType.Link }
*
/**
* Gets the value of the event property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the event property.
+ * This is why there is not a <CODE>set</CODE> method for the event property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvent().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EventType }
*
/**
* Gets the value of the isoform property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the isoform property.
+ * This is why there is not a <CODE>set</CODE> method for the isoform property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getIsoform().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link IsoformType }
*
/**
* Gets the value of the interactant property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the interactant property.
+ * This is why there is not a <CODE>set</CODE> method for the interactant property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getInteractant().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link InteractantType }
*
/**
* Gets the value of the location property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the location property.
+ * This is why there is not a <CODE>set</CODE> method for the location property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getLocation().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link LocationType }
*
/**
* Gets the value of the text property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the text property.
+ * This is why there is not a <CODE>set</CODE> method for the text property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getText().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="max" type="{http://uniprot.org/uniprot}evidencedStringType" minOccurs="0"/>
- * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="max" type="{http://uniprot.org/uniprot}evidencedStringType" minOccurs="0"/&gt;
+ * &lt;element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the text property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the text property.
+ * This is why there is not a <CODE>set</CODE> method for the text property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getText().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="sequence" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="resource" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="EMBL-CDS"/>
- * <enumeration value="EMBL"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}int" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * <attribute name="type" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="frameshift"/>
- * <enumeration value="erroneous initiation"/>
- * <enumeration value="erroneous termination"/>
- * <enumeration value="erroneous gene model prediction"/>
- * <enumeration value="erroneous translation"/>
- * <enumeration value="miscellaneous discrepancy"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="sequence" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="resource" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="EMBL-CDS"/&gt;
+ * &lt;enumeration value="EMBL"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="version" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="type" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="frameshift"/&gt;
+ * &lt;enumeration value="erroneous initiation"/&gt;
+ * &lt;enumeration value="erroneous termination"/&gt;
+ * &lt;enumeration value="erroneous gene model prediction"/&gt;
+ * &lt;enumeration value="erroneous translation"/&gt;
+ * &lt;enumeration value="miscellaneous discrepancy"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="resource" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="EMBL-CDS"/>
- * <enumeration value="EMBL"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}int" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="resource" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="EMBL-CDS"/&gt;
+ * &lt;enumeration value="EMBL"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="version" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="name" type="{http://www.w3.org/2001/XMLSchema}string"/>
- * <element name="acronym" type="{http://www.w3.org/2001/XMLSchema}string"/>
- * <element name="description" type="{http://www.w3.org/2001/XMLSchema}string"/>
- * <element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType"/>
- * </sequence>
- * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="name" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;
+ * &lt;element name="acronym" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;
+ * &lt;element name="description" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;
+ * &lt;element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="KM" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="Vmax" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="KM" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="Vmax" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the km property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the km property.
+ * This is why there is not a <CODE>set</CODE> method for the km property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getKM().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
* Gets the value of the vmax property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the vmax property.
+ * This is why there is not a <CODE>set</CODE> method for the vmax property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getVmax().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
* Gets the value of the text property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the text property.
+ * This is why there is not a <CODE>set</CODE> method for the text property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getText().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="uri" use="required" type="{http://www.w3.org/2001/XMLSchema}anyURI" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="uri" use="required" type="{http://www.w3.org/2001/XMLSchema}anyURI" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the text property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the text property.
+ * This is why there is not a <CODE>set</CODE> method for the text property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getText().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the text property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the text property.
+ * This is why there is not a <CODE>set</CODE> method for the text property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getText().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the text property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the text property.
+ * This is why there is not a <CODE>set</CODE> method for the text property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getText().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
* Describes the authors of a citation when these are represented by a consortium.
* Equivalent to the flat file RG-line.
*
- * <p>Java class for consortiumType complex type.
+ * <p>Java class for consortiumType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="consortiumType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="consortiumType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
* Equivalent to the flat file DR-line.
*
*
- * <p>Java class for dbReferenceType complex type.
+ * <p>Java class for dbReferenceType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="dbReferenceType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="molecule" type="{http://uniprot.org/uniprot}moleculeType" minOccurs="0"/>
- * <element name="property" type="{http://uniprot.org/uniprot}propertyType" maxOccurs="unbounded" minOccurs="0"/>
- * </sequence>
- * <attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="dbReferenceType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="molecule" type="{http://uniprot.org/uniprot}moleculeType" minOccurs="0"/&gt;
+ * &lt;element name="property" type="{http://uniprot.org/uniprot}propertyType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the property property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the property property.
+ * This is why there is not a <CODE>set</CODE> method for the property property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getProperty().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link PropertyType }
*
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="accession" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/>
- * <element name="name" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/>
- * <element name="protein" type="{http://uniprot.org/uniprot}proteinType"/>
- * <element name="gene" type="{http://uniprot.org/uniprot}geneType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="organism" type="{http://uniprot.org/uniprot}organismType"/>
- * <element name="organismHost" type="{http://uniprot.org/uniprot}organismType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="geneLocation" type="{http://uniprot.org/uniprot}geneLocationType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="reference" type="{http://uniprot.org/uniprot}referenceType" maxOccurs="unbounded"/>
- * <element name="comment" type="{http://uniprot.org/uniprot}commentType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="proteinExistence" type="{http://uniprot.org/uniprot}proteinExistenceType"/>
- * <element name="keyword" type="{http://uniprot.org/uniprot}keywordType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="feature" type="{http://uniprot.org/uniprot}featureType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="evidence" type="{http://uniprot.org/uniprot}evidenceType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="sequence" type="{http://uniprot.org/uniprot}sequenceType"/>
- * </sequence>
- * <attribute name="dataset" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="Swiss-Prot"/>
- * <enumeration value="TrEMBL"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="created" use="required" type="{http://www.w3.org/2001/XMLSchema}date" />
- * <attribute name="modified" use="required" type="{http://www.w3.org/2001/XMLSchema}date" />
- * <attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}int" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="accession" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/&gt;
+ * &lt;element name="name" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/&gt;
+ * &lt;element name="protein" type="{http://uniprot.org/uniprot}proteinType"/&gt;
+ * &lt;element name="gene" type="{http://uniprot.org/uniprot}geneType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="organism" type="{http://uniprot.org/uniprot}organismType"/&gt;
+ * &lt;element name="organismHost" type="{http://uniprot.org/uniprot}organismType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="geneLocation" type="{http://uniprot.org/uniprot}geneLocationType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="reference" type="{http://uniprot.org/uniprot}referenceType" maxOccurs="unbounded"/&gt;
+ * &lt;element name="comment" type="{http://uniprot.org/uniprot}commentType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="proteinExistence" type="{http://uniprot.org/uniprot}proteinExistenceType"/&gt;
+ * &lt;element name="keyword" type="{http://uniprot.org/uniprot}keywordType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="feature" type="{http://uniprot.org/uniprot}featureType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="evidence" type="{http://uniprot.org/uniprot}evidenceType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="sequence" type="{http://uniprot.org/uniprot}sequenceType"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="dataset" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="Swiss-Prot"/&gt;
+ * &lt;enumeration value="TrEMBL"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="created" use="required" type="{http://www.w3.org/2001/XMLSchema}date" /&gt;
+ * &lt;attribute name="modified" use="required" type="{http://www.w3.org/2001/XMLSchema}date" /&gt;
+ * &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the accession property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the accession property.
+ * This is why there is not a <CODE>set</CODE> method for the accession property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getAccession().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link String }
*
/**
* Gets the value of the name property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the name property.
+ * This is why there is not a <CODE>set</CODE> method for the name property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link String }
*
/**
* Gets the value of the gene property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the gene property.
+ * This is why there is not a <CODE>set</CODE> method for the gene property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getGene().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link GeneType }
*
/**
* Gets the value of the organismHost property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the organismHost property.
+ * This is why there is not a <CODE>set</CODE> method for the organismHost property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getOrganismHost().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link OrganismType }
*
/**
* Gets the value of the geneLocation property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the geneLocation property.
+ * This is why there is not a <CODE>set</CODE> method for the geneLocation property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getGeneLocation().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link GeneLocationType }
*
/**
* Gets the value of the reference property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the reference property.
+ * This is why there is not a <CODE>set</CODE> method for the reference property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getReference().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link ReferenceType }
*
/**
* Gets the value of the comment property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the comment property.
+ * This is why there is not a <CODE>set</CODE> method for the comment property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getComment().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link CommentType }
*
/**
* Gets the value of the dbReference property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the dbReference property.
+ * This is why there is not a <CODE>set</CODE> method for the dbReference property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getDbReference().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link DbReferenceType }
*
/**
* Gets the value of the keyword property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the keyword property.
+ * This is why there is not a <CODE>set</CODE> method for the keyword property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getKeyword().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link KeywordType }
*
/**
* Gets the value of the feature property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the feature property.
+ * This is why there is not a <CODE>set</CODE> method for the feature property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getFeature().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link FeatureType }
*
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidenceType }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
* Describes the type of events that cause alternative products.
*
- * <p>Java class for eventType complex type.
+ * <p>Java class for eventType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="eventType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="type" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="alternative splicing"/>
- * <enumeration value="alternative initiation"/>
- * <enumeration value="alternative promoter"/>
- * <enumeration value="ribosomal frameshifting"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="eventType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="type" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="alternative splicing"/&gt;
+ * &lt;enumeration value="alternative initiation"/&gt;
+ * &lt;enumeration value="alternative promoter"/&gt;
+ * &lt;enumeration value="ribosomal frameshifting"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
* Describes the evidence for an annotation.
* No flat file equivalent.
*
- * <p>Java class for evidenceType complex type.
+ * <p>Java class for evidenceType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="evidenceType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="source" type="{http://uniprot.org/uniprot}sourceType" minOccurs="0"/>
- * <element name="importedFrom" type="{http://uniprot.org/uniprot}importedFromType" minOccurs="0"/>
- * </sequence>
- * <attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="key" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="evidenceType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="source" type="{http://uniprot.org/uniprot}sourceType" minOccurs="0"/&gt;
+ * &lt;element name="importedFrom" type="{http://uniprot.org/uniprot}importedFromType" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="key" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
- * <p>Java class for evidencedStringType complex type.
+ * <p>Java class for evidencedStringType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="evidencedStringType">
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * <attribute name="status">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="by similarity"/>
- * <enumeration value="probable"/>
- * <enumeration value="potential"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * </extension>
- * </simpleContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="evidencedStringType"&gt;
+ * &lt;simpleContent&gt;
+ * &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema&gt;string"&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;attribute name="status"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="by similarity"/&gt;
+ * &lt;enumeration value="probable"/&gt;
+ * &lt;enumeration value="potential"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;/extension&gt;
+ * &lt;/simpleContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
* Describes different types of sequence annotations.
* Equivalent to the flat file FT-line.
*
- * <p>Java class for featureType complex type.
+ * <p>Java class for featureType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="featureType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="original" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- * <element name="variation" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="location" type="{http://uniprot.org/uniprot}locationType"/>
- * </sequence>
- * <attribute name="type" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="active site"/>
- * <enumeration value="binding site"/>
- * <enumeration value="calcium-binding region"/>
- * <enumeration value="chain"/>
- * <enumeration value="coiled-coil region"/>
- * <enumeration value="compositionally biased region"/>
- * <enumeration value="cross-link"/>
- * <enumeration value="disulfide bond"/>
- * <enumeration value="DNA-binding region"/>
- * <enumeration value="domain"/>
- * <enumeration value="glycosylation site"/>
- * <enumeration value="helix"/>
- * <enumeration value="initiator methionine"/>
- * <enumeration value="lipid moiety-binding region"/>
- * <enumeration value="metal ion-binding site"/>
- * <enumeration value="modified residue"/>
- * <enumeration value="mutagenesis site"/>
- * <enumeration value="non-consecutive residues"/>
- * <enumeration value="non-terminal residue"/>
- * <enumeration value="nucleotide phosphate-binding region"/>
- * <enumeration value="peptide"/>
- * <enumeration value="propeptide"/>
- * <enumeration value="region of interest"/>
- * <enumeration value="repeat"/>
- * <enumeration value="non-standard amino acid"/>
- * <enumeration value="sequence conflict"/>
- * <enumeration value="sequence variant"/>
- * <enumeration value="short sequence motif"/>
- * <enumeration value="signal peptide"/>
- * <enumeration value="site"/>
- * <enumeration value="splice variant"/>
- * <enumeration value="strand"/>
- * <enumeration value="topological domain"/>
- * <enumeration value="transit peptide"/>
- * <enumeration value="transmembrane region"/>
- * <enumeration value="turn"/>
- * <enumeration value="unsure residue"/>
- * <enumeration value="zinc finger region"/>
- * <enumeration value="intramembrane region"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="status">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="by similarity"/>
- * <enumeration value="probable"/>
- * <enumeration value="potential"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="description" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * <attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="featureType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="original" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
+ * &lt;element name="variation" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="location" type="{http://uniprot.org/uniprot}locationType"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="type" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="active site"/&gt;
+ * &lt;enumeration value="binding site"/&gt;
+ * &lt;enumeration value="calcium-binding region"/&gt;
+ * &lt;enumeration value="chain"/&gt;
+ * &lt;enumeration value="coiled-coil region"/&gt;
+ * &lt;enumeration value="compositionally biased region"/&gt;
+ * &lt;enumeration value="cross-link"/&gt;
+ * &lt;enumeration value="disulfide bond"/&gt;
+ * &lt;enumeration value="DNA-binding region"/&gt;
+ * &lt;enumeration value="domain"/&gt;
+ * &lt;enumeration value="glycosylation site"/&gt;
+ * &lt;enumeration value="helix"/&gt;
+ * &lt;enumeration value="initiator methionine"/&gt;
+ * &lt;enumeration value="lipid moiety-binding region"/&gt;
+ * &lt;enumeration value="metal ion-binding site"/&gt;
+ * &lt;enumeration value="modified residue"/&gt;
+ * &lt;enumeration value="mutagenesis site"/&gt;
+ * &lt;enumeration value="non-consecutive residues"/&gt;
+ * &lt;enumeration value="non-terminal residue"/&gt;
+ * &lt;enumeration value="nucleotide phosphate-binding region"/&gt;
+ * &lt;enumeration value="peptide"/&gt;
+ * &lt;enumeration value="propeptide"/&gt;
+ * &lt;enumeration value="region of interest"/&gt;
+ * &lt;enumeration value="repeat"/&gt;
+ * &lt;enumeration value="non-standard amino acid"/&gt;
+ * &lt;enumeration value="sequence conflict"/&gt;
+ * &lt;enumeration value="sequence variant"/&gt;
+ * &lt;enumeration value="short sequence motif"/&gt;
+ * &lt;enumeration value="signal peptide"/&gt;
+ * &lt;enumeration value="site"/&gt;
+ * &lt;enumeration value="splice variant"/&gt;
+ * &lt;enumeration value="strand"/&gt;
+ * &lt;enumeration value="topological domain"/&gt;
+ * &lt;enumeration value="transit peptide"/&gt;
+ * &lt;enumeration value="transmembrane region"/&gt;
+ * &lt;enumeration value="turn"/&gt;
+ * &lt;enumeration value="unsure residue"/&gt;
+ * &lt;enumeration value="zinc finger region"/&gt;
+ * &lt;enumeration value="intramembrane region"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="status"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="by similarity"/&gt;
+ * &lt;enumeration value="probable"/&gt;
+ * &lt;enumeration value="potential"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="description" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the variation property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the variation property.
+ * This is why there is not a <CODE>set</CODE> method for the variation property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getVariation().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link String }
*
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
* Describes non-nuclear gene locations (organelles and plasmids).
* Equivalent to the flat file OG-line.
*
- * <p>Java class for geneLocationType complex type.
+ * <p>Java class for geneLocationType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="geneLocationType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="name" type="{http://uniprot.org/uniprot}statusType" maxOccurs="unbounded" minOccurs="0"/>
- * </sequence>
- * <attribute name="type" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="apicoplast"/>
- * <enumeration value="chloroplast"/>
- * <enumeration value="organellar chromatophore"/>
- * <enumeration value="cyanelle"/>
- * <enumeration value="hydrogenosome"/>
- * <enumeration value="mitochondrion"/>
- * <enumeration value="non-photosynthetic plastid"/>
- * <enumeration value="nucleomorph"/>
- * <enumeration value="plasmid"/>
- * <enumeration value="plastid"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="geneLocationType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="name" type="{http://uniprot.org/uniprot}statusType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="type" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="apicoplast"/&gt;
+ * &lt;enumeration value="chloroplast"/&gt;
+ * &lt;enumeration value="organellar chromatophore"/&gt;
+ * &lt;enumeration value="cyanelle"/&gt;
+ * &lt;enumeration value="hydrogenosome"/&gt;
+ * &lt;enumeration value="mitochondrion"/&gt;
+ * &lt;enumeration value="non-photosynthetic plastid"/&gt;
+ * &lt;enumeration value="nucleomorph"/&gt;
+ * &lt;enumeration value="plasmid"/&gt;
+ * &lt;enumeration value="plastid"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the name property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the name property.
+ * This is why there is not a <CODE>set</CODE> method for the name property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link StatusType }
*
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
* Describes different types of gene designations.
* Equivalent to the flat file GN-line.
*
- * <p>Java class for geneNameType complex type.
+ * <p>Java class for geneNameType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="geneNameType">
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * <attribute name="type" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="primary"/>
- * <enumeration value="synonym"/>
- * <enumeration value="ordered locus"/>
- * <enumeration value="ORF"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * </extension>
- * </simpleContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="geneNameType"&gt;
+ * &lt;simpleContent&gt;
+ * &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema&gt;string"&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;attribute name="type" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="primary"/&gt;
+ * &lt;enumeration value="synonym"/&gt;
+ * &lt;enumeration value="ordered locus"/&gt;
+ * &lt;enumeration value="ORF"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;/extension&gt;
+ * &lt;/simpleContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
* Describes a gene.
* Equivalent to the flat file GN-line.
*
- * <p>Java class for geneType complex type.
+ * <p>Java class for geneType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="geneType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="name" type="{http://uniprot.org/uniprot}geneNameType" maxOccurs="unbounded"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="geneType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="name" type="{http://uniprot.org/uniprot}geneNameType" maxOccurs="unbounded"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the name property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the name property.
+ * This is why there is not a <CODE>set</CODE> method for the name property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link GeneNameType }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
* Describes the source of the evidence, when it is not assigned by UniProt, but imported from an external database.
*
- * <p>Java class for importedFromType complex type.
+ * <p>Java class for importedFromType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="importedFromType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="importedFromType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
- * <p>Java class for interactantType complex type.
+ * <p>Java class for interactantType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="interactantType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <group ref="{http://uniprot.org/uniprot}interactantGroup" minOccurs="0"/>
- * <attribute name="intactId" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="interactantType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;group ref="{http://uniprot.org/uniprot}interactantGroup" minOccurs="0"/&gt;
+ * &lt;attribute name="intactId" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
* Describes isoforms in 'alternative products' annotations.
*
- * <p>Java class for isoformType complex type.
+ * <p>Java class for isoformType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="isoformType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="id" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/>
- * <element name="name" maxOccurs="unbounded">
- * <complexType>
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </extension>
- * </simpleContent>
- * </complexType>
- * </element>
- * <element name="sequence">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="type" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="not described"/>
- * <enumeration value="described"/>
- * <enumeration value="displayed"/>
- * <enumeration value="external"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="isoformType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="id" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/&gt;
+ * &lt;element name="name" maxOccurs="unbounded"&gt;
+ * &lt;complexType&gt;
+ * &lt;simpleContent&gt;
+ * &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema&gt;string"&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/extension&gt;
+ * &lt;/simpleContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;element name="sequence"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="type" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="not described"/&gt;
+ * &lt;enumeration value="described"/&gt;
+ * &lt;enumeration value="displayed"/&gt;
+ * &lt;enumeration value="external"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the id property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the id property.
+ * This is why there is not a <CODE>set</CODE> method for the id property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getId().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link String }
*
/**
* Gets the value of the name property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the name property.
+ * This is why there is not a <CODE>set</CODE> method for the name property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link IsoformType.Name }
*
/**
* Gets the value of the text property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the text property.
+ * This is why there is not a <CODE>set</CODE> method for the text property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getText().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </extension>
- * </simpleContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;simpleContent&gt;
+ * &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema&gt;string"&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/extension&gt;
+ * &lt;/simpleContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="type" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="not described"/>
- * <enumeration value="described"/>
- * <enumeration value="displayed"/>
- * <enumeration value="external"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="type" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="not described"/&gt;
+ * &lt;enumeration value="described"/&gt;
+ * &lt;enumeration value="displayed"/&gt;
+ * &lt;enumeration value="external"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
- * <p>Java class for keywordType complex type.
+ * <p>Java class for keywordType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="keywordType">
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </extension>
- * </simpleContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="keywordType"&gt;
+ * &lt;simpleContent&gt;
+ * &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema&gt;string"&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/extension&gt;
+ * &lt;/simpleContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
* Describes a sequence location as either a range with a begin and end or as a position. The 'sequence' attribute is only used when the location is not on the canonical sequence displayed in the current entry.
*
- * <p>Java class for locationType complex type.
+ * <p>Java class for locationType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="locationType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <choice>
- * <sequence>
- * <element name="begin" type="{http://uniprot.org/uniprot}positionType"/>
- * <element name="end" type="{http://uniprot.org/uniprot}positionType"/>
- * </sequence>
- * <element name="position" type="{http://uniprot.org/uniprot}positionType"/>
- * </choice>
- * <attribute name="sequence" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="locationType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;choice&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="begin" type="{http://uniprot.org/uniprot}positionType"/&gt;
+ * &lt;element name="end" type="{http://uniprot.org/uniprot}positionType"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;element name="position" type="{http://uniprot.org/uniprot}positionType"/&gt;
+ * &lt;/choice&gt;
+ * &lt;attribute name="sequence" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
* Describes a molecule by name or unique identifier.
*
- * <p>Java class for moleculeType complex type.
+ * <p>Java class for moleculeType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="moleculeType">
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </extension>
- * </simpleContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="moleculeType"&gt;
+ * &lt;simpleContent&gt;
+ * &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema&gt;string"&gt;
+ * &lt;attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/extension&gt;
+ * &lt;/simpleContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
- * <p>Java class for nameListType complex type.
+ * <p>Java class for nameListType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="nameListType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <choice maxOccurs="unbounded">
- * <element name="consortium" type="{http://uniprot.org/uniprot}consortiumType"/>
- * <element name="person" type="{http://uniprot.org/uniprot}personType"/>
- * </choice>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="nameListType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;choice maxOccurs="unbounded"&gt;
+ * &lt;element name="consortium" type="{http://uniprot.org/uniprot}consortiumType"/&gt;
+ * &lt;element name="person" type="{http://uniprot.org/uniprot}personType"/&gt;
+ * &lt;/choice&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the consortiumOrPerson property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the consortiumOrPerson property.
+ * This is why there is not a <CODE>set</CODE> method for the consortiumOrPerson property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getConsortiumOrPerson().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link ConsortiumType }
* {@link PersonType }
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
* This object contains factory methods for each
* Java content interface and Java element interface
* generated in the jalview.xml.binding.uniprot package.
- * <p>An ObjectFactory allows you to programatically
+ * <p>An ObjectFactory allows you to programatically
* construct new instances of the Java representation
* for XML content. The Java representation of XML
* content can consist of schema derived interfaces
}
/**
- * Create an instance of {@link SourceDataType }
+ * Create an instance of {@link IsoformType }
*
*/
- public SourceDataType createSourceDataType() {
- return new SourceDataType();
+ public IsoformType createIsoformType() {
+ return new IsoformType();
}
/**
- * Create an instance of {@link IsoformType }
+ * Create an instance of {@link SourceDataType }
*
*/
- public IsoformType createIsoformType() {
- return new IsoformType();
+ public SourceDataType createSourceDataType() {
+ return new SourceDataType();
}
/**
}
/**
+ * Create an instance of {@link Uniprot }
+ *
+ */
+ public Uniprot createUniprot() {
+ return new Uniprot();
+ }
+
+ /**
* Create an instance of {@link Entry }
*
*/
}
/**
- * Create an instance of {@link Uniprot }
+ * Create an instance of {@link GeneNameType }
*
*/
- public Uniprot createUniprot() {
- return new Uniprot();
+ public GeneNameType createGeneNameType() {
+ return new GeneNameType();
+ }
+
+ /**
+ * Create an instance of {@link OrganismNameType }
+ *
+ */
+ public OrganismNameType createOrganismNameType() {
+ return new OrganismNameType();
}
/**
}
/**
- * Create an instance of {@link PositionType }
+ * Create an instance of {@link CitationType }
*
*/
- public PositionType createPositionType() {
- return new PositionType();
+ public CitationType createCitationType() {
+ return new CitationType();
}
/**
}
/**
- * Create an instance of {@link GeneNameType }
- *
- */
- public GeneNameType createGeneNameType() {
- return new GeneNameType();
- }
-
- /**
- * Create an instance of {@link LocationType }
+ * Create an instance of {@link PersonType }
*
*/
- public LocationType createLocationType() {
- return new LocationType();
+ public PersonType createPersonType() {
+ return new PersonType();
}
/**
- * Create an instance of {@link CitationType }
+ * Create an instance of {@link NameListType }
*
*/
- public CitationType createCitationType() {
- return new CitationType();
+ public NameListType createNameListType() {
+ return new NameListType();
}
/**
- * Create an instance of {@link PropertyType }
+ * Create an instance of {@link ReactionType }
*
*/
- public PropertyType createPropertyType() {
- return new PropertyType();
+ public ReactionType createReactionType() {
+ return new ReactionType();
}
/**
}
/**
- * Create an instance of {@link EvidencedStringType }
+ * Create an instance of {@link SubcellularLocationType }
*
*/
- public EvidencedStringType createEvidencedStringType() {
- return new EvidencedStringType();
+ public SubcellularLocationType createSubcellularLocationType() {
+ return new SubcellularLocationType();
}
/**
- * Create an instance of {@link PersonType }
+ * Create an instance of {@link EventType }
*
*/
- public PersonType createPersonType() {
- return new PersonType();
+ public EventType createEventType() {
+ return new EventType();
}
/**
- * Create an instance of {@link ImportedFromType }
+ * Create an instance of {@link InteractantType }
*
*/
- public ImportedFromType createImportedFromType() {
- return new ImportedFromType();
+ public InteractantType createInteractantType() {
+ return new InteractantType();
}
/**
- * Create an instance of {@link EventType }
+ * Create an instance of {@link PropertyType }
*
*/
- public EventType createEventType() {
- return new EventType();
+ public PropertyType createPropertyType() {
+ return new PropertyType();
}
/**
- * Create an instance of {@link InteractantType }
+ * Create an instance of {@link LocationType }
*
*/
- public InteractantType createInteractantType() {
- return new InteractantType();
+ public LocationType createLocationType() {
+ return new LocationType();
}
/**
- * Create an instance of {@link NameListType }
+ * Create an instance of {@link PositionType }
*
*/
- public NameListType createNameListType() {
- return new NameListType();
+ public PositionType createPositionType() {
+ return new PositionType();
}
/**
- * Create an instance of {@link ReactionType }
+ * Create an instance of {@link MoleculeType }
*
*/
- public ReactionType createReactionType() {
- return new ReactionType();
+ public MoleculeType createMoleculeType() {
+ return new MoleculeType();
}
/**
}
/**
- * Create an instance of {@link MoleculeType }
+ * Create an instance of {@link ImportedFromType }
*
*/
- public MoleculeType createMoleculeType() {
- return new MoleculeType();
+ public ImportedFromType createImportedFromType() {
+ return new ImportedFromType();
}
/**
- * Create an instance of {@link OrganismNameType }
+ * Create an instance of {@link EvidencedStringType }
*
*/
- public OrganismNameType createOrganismNameType() {
- return new OrganismNameType();
+ public EvidencedStringType createEvidencedStringType() {
+ return new EvidencedStringType();
}
/**
- * Create an instance of {@link SubcellularLocationType }
+ * Create an instance of {@link IsoformType.Name }
*
*/
- public SubcellularLocationType createSubcellularLocationType() {
- return new SubcellularLocationType();
+ public IsoformType.Name createIsoformTypeName() {
+ return new IsoformType.Name();
+ }
+
+ /**
+ * Create an instance of {@link IsoformType.Sequence }
+ *
+ */
+ public IsoformType.Sequence createIsoformTypeSequence() {
+ return new IsoformType.Sequence();
}
/**
}
/**
- * Create an instance of {@link IsoformType.Name }
- *
- */
- public IsoformType.Name createIsoformTypeName() {
- return new IsoformType.Name();
- }
-
- /**
- * Create an instance of {@link IsoformType.Sequence }
- *
- */
- public IsoformType.Sequence createIsoformTypeSequence() {
- return new IsoformType.Sequence();
- }
-
- /**
* Create an instance of {@link CommentType.Absorption }
*
*/
}
/**
- * Create an instance of {@link JAXBElement }{@code <}{@link String }{@code >}}
+ * Create an instance of {@link JAXBElement }{@code <}{@link String }{@code >}
*
+ * @param value
+ * Java instance representing xml element's value.
+ * @return
+ * the new instance of {@link JAXBElement }{@code <}{@link String }{@code >}
*/
@XmlElementDecl(namespace = "http://uniprot.org/uniprot", name = "copyright")
public JAXBElement<String> createCopyright(String value) {
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
* Describes different types of source organism names.
*
- * <p>Java class for organismNameType complex type.
+ * <p>Java class for organismNameType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="organismNameType">
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="type" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="common"/>
- * <enumeration value="full"/>
- * <enumeration value="scientific"/>
- * <enumeration value="synonym"/>
- * <enumeration value="abbreviation"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * </extension>
- * </simpleContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="organismNameType"&gt;
+ * &lt;simpleContent&gt;
+ * &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema&gt;string"&gt;
+ * &lt;attribute name="type" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="common"/&gt;
+ * &lt;enumeration value="full"/&gt;
+ * &lt;enumeration value="scientific"/&gt;
+ * &lt;enumeration value="synonym"/&gt;
+ * &lt;enumeration value="abbreviation"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;/extension&gt;
+ * &lt;/simpleContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
* Describes the source organism.
*
- * <p>Java class for organismType complex type.
+ * <p>Java class for organismType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="organismType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="name" type="{http://uniprot.org/uniprot}organismNameType" maxOccurs="unbounded"/>
- * <element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType" maxOccurs="unbounded"/>
- * <element name="lineage" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="taxon" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="organismType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="name" type="{http://uniprot.org/uniprot}organismNameType" maxOccurs="unbounded"/&gt;
+ * &lt;element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType" maxOccurs="unbounded"/&gt;
+ * &lt;element name="lineage" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="taxon" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the name property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the name property.
+ * This is why there is not a <CODE>set</CODE> method for the name property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link OrganismNameType }
*
/**
* Gets the value of the dbReference property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the dbReference property.
+ * This is why there is not a <CODE>set</CODE> method for the dbReference property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getDbReference().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link DbReferenceType }
*
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="taxon" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="taxon" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the taxon property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the taxon property.
+ * This is why there is not a <CODE>set</CODE> method for the taxon property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getTaxon().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link String }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
- * <p>Java class for personType complex type.
+ * <p>Java class for personType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="personType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="personType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
* Describes a physiological reaction.
*
- * <p>Java class for physiologicalReactionType complex type.
+ * <p>Java class for physiologicalReactionType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="physiologicalReactionType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType"/>
- * </sequence>
- * <attribute name="direction" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="left-to-right"/>
- * <enumeration value="right-to-left"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="physiologicalReactionType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="direction" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="left-to-right"/&gt;
+ * &lt;enumeration value="right-to-left"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
- * <p>Java class for positionType complex type.
+ * <p>Java class for positionType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="positionType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="position" type="{http://www.w3.org/2001/XMLSchema}unsignedLong" />
- * <attribute name="status" default="certain">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="certain"/>
- * <enumeration value="uncertain"/>
- * <enumeration value="less than"/>
- * <enumeration value="greater than"/>
- * <enumeration value="unknown"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="positionType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="position" type="{http://www.w3.org/2001/XMLSchema}unsignedLong" /&gt;
+ * &lt;attribute name="status" default="certain"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="certain"/&gt;
+ * &lt;enumeration value="uncertain"/&gt;
+ * &lt;enumeration value="less than"/&gt;
+ * &lt;enumeration value="greater than"/&gt;
+ * &lt;enumeration value="unknown"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
- * <p>Java class for propertyType complex type.
+ * <p>Java class for propertyType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="propertyType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="value" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="propertyType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="value" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
* Describes the evidence for the protein's existence.
* Equivalent to the flat file PE-line.
*
- * <p>Java class for proteinExistenceType complex type.
+ * <p>Java class for proteinExistenceType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="proteinExistenceType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="type" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="evidence at protein level"/>
- * <enumeration value="evidence at transcript level"/>
- * <enumeration value="inferred from homology"/>
- * <enumeration value="predicted"/>
- * <enumeration value="uncertain"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="proteinExistenceType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;attribute name="type" use="required"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="evidence at protein level"/&gt;
+ * &lt;enumeration value="evidence at transcript level"/&gt;
+ * &lt;enumeration value="inferred from homology"/&gt;
+ * &lt;enumeration value="predicted"/&gt;
+ * &lt;enumeration value="uncertain"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
* Describes the names for the protein and parts thereof.
* Equivalent to the flat file DE-line.
*
- * <p>Java class for proteinType complex type.
+ * <p>Java class for proteinType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="proteinType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <group ref="{http://uniprot.org/uniprot}proteinNameGroup"/>
- * <element name="domain" maxOccurs="unbounded" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <group ref="{http://uniprot.org/uniprot}proteinNameGroup"/>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="component" maxOccurs="unbounded" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <group ref="{http://uniprot.org/uniprot}proteinNameGroup"/>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="proteinType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;group ref="{http://uniprot.org/uniprot}proteinNameGroup"/&gt;
+ * &lt;element name="domain" maxOccurs="unbounded" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;group ref="{http://uniprot.org/uniprot}proteinNameGroup"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;element name="component" maxOccurs="unbounded" minOccurs="0"&gt;
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;group ref="{http://uniprot.org/uniprot}proteinNameGroup"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the alternativeName property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the alternativeName property.
+ * This is why there is not a <CODE>set</CODE> method for the alternativeName property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getAlternativeName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link ProteinType.AlternativeName }
*
/**
* Gets the value of the submittedName property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the submittedName property.
+ * This is why there is not a <CODE>set</CODE> method for the submittedName property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getSubmittedName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link ProteinType.SubmittedName }
*
/**
* Gets the value of the cdAntigenName property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the cdAntigenName property.
+ * This is why there is not a <CODE>set</CODE> method for the cdAntigenName property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getCdAntigenName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
* Gets the value of the innName property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the innName property.
+ * This is why there is not a <CODE>set</CODE> method for the innName property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getInnName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
* Gets the value of the domain property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the domain property.
+ * This is why there is not a <CODE>set</CODE> method for the domain property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getDomain().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link ProteinType.Domain }
*
/**
* Gets the value of the component property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the component property.
+ * This is why there is not a <CODE>set</CODE> method for the component property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getComponent().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link ProteinType.Component }
*
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="fullName" type="{http://uniprot.org/uniprot}evidencedStringType" minOccurs="0"/>
- * <element name="shortName" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="ecNumber" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="fullName" type="{http://uniprot.org/uniprot}evidencedStringType" minOccurs="0"/&gt;
+ * &lt;element name="shortName" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="ecNumber" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the shortName property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the shortName property.
+ * This is why there is not a <CODE>set</CODE> method for the shortName property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getShortName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
* Gets the value of the ecNumber property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the ecNumber property.
+ * This is why there is not a <CODE>set</CODE> method for the ecNumber property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEcNumber().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <group ref="{http://uniprot.org/uniprot}proteinNameGroup"/>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;group ref="{http://uniprot.org/uniprot}proteinNameGroup"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the alternativeName property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the alternativeName property.
+ * This is why there is not a <CODE>set</CODE> method for the alternativeName property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getAlternativeName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link ProteinType.AlternativeName }
*
/**
* Gets the value of the submittedName property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the submittedName property.
+ * This is why there is not a <CODE>set</CODE> method for the submittedName property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getSubmittedName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link ProteinType.SubmittedName }
*
/**
* Gets the value of the cdAntigenName property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the cdAntigenName property.
+ * This is why there is not a <CODE>set</CODE> method for the cdAntigenName property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getCdAntigenName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
* Gets the value of the innName property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the innName property.
+ * This is why there is not a <CODE>set</CODE> method for the innName property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getInnName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <group ref="{http://uniprot.org/uniprot}proteinNameGroup"/>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;group ref="{http://uniprot.org/uniprot}proteinNameGroup"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the alternativeName property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the alternativeName property.
+ * This is why there is not a <CODE>set</CODE> method for the alternativeName property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getAlternativeName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link ProteinType.AlternativeName }
*
/**
* Gets the value of the submittedName property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the submittedName property.
+ * This is why there is not a <CODE>set</CODE> method for the submittedName property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getSubmittedName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link ProteinType.SubmittedName }
*
/**
* Gets the value of the cdAntigenName property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the cdAntigenName property.
+ * This is why there is not a <CODE>set</CODE> method for the cdAntigenName property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getCdAntigenName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
* Gets the value of the innName property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the innName property.
+ * This is why there is not a <CODE>set</CODE> method for the innName property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getInnName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="fullName" type="{http://uniprot.org/uniprot}evidencedStringType"/>
- * <element name="shortName" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="ecNumber" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="fullName" type="{http://uniprot.org/uniprot}evidencedStringType"/&gt;
+ * &lt;element name="shortName" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="ecNumber" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the shortName property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the shortName property.
+ * This is why there is not a <CODE>set</CODE> method for the shortName property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getShortName().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
* Gets the value of the ecNumber property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the ecNumber property.
+ * This is why there is not a <CODE>set</CODE> method for the ecNumber property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEcNumber().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="fullName" type="{http://uniprot.org/uniprot}evidencedStringType"/>
- * <element name="ecNumber" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="fullName" type="{http://uniprot.org/uniprot}evidencedStringType"/&gt;
+ * &lt;element name="ecNumber" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the ecNumber property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the ecNumber property.
+ * This is why there is not a <CODE>set</CODE> method for the ecNumber property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEcNumber().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
* Describes a chemical reaction.
*
- * <p>Java class for reactionType complex type.
+ * <p>Java class for reactionType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="reactionType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="text" type="{http://www.w3.org/2001/XMLSchema}string"/>
- * <element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType" maxOccurs="unbounded"/>
- * </sequence>
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="reactionType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="text" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;
+ * &lt;element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType" maxOccurs="unbounded"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the dbReference property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the dbReference property.
+ * This is why there is not a <CODE>set</CODE> method for the dbReference property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getDbReference().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link DbReferenceType }
*
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
* Describes a citation and a summary of its content.
* Equivalent to the flat file RN-, RP-, RC-, RX-, RG-, RA-, RT- and RL-lines.
*
- * <p>Java class for referenceType complex type.
+ * <p>Java class for referenceType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="referenceType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="citation" type="{http://uniprot.org/uniprot}citationType"/>
- * <group ref="{http://uniprot.org/uniprot}sptrCitationGroup"/>
- * </sequence>
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * <attribute name="key" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="referenceType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="citation" type="{http://uniprot.org/uniprot}citationType"/&gt;
+ * &lt;group ref="{http://uniprot.org/uniprot}sptrCitationGroup"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;attribute name="key" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the scope property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the scope property.
+ * This is why there is not a <CODE>set</CODE> method for the scope property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getScope().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link String }
*
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
- * <p>Java class for sequenceType complex type.
+ * <p>Java class for sequenceType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="sequenceType">
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="length" use="required" type="{http://www.w3.org/2001/XMLSchema}int" />
- * <attribute name="mass" use="required" type="{http://www.w3.org/2001/XMLSchema}int" />
- * <attribute name="checksum" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="modified" use="required" type="{http://www.w3.org/2001/XMLSchema}date" />
- * <attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}int" />
- * <attribute name="precursor" type="{http://www.w3.org/2001/XMLSchema}boolean" />
- * <attribute name="fragment">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="single"/>
- * <enumeration value="multiple"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * </extension>
- * </simpleContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="sequenceType"&gt;
+ * &lt;simpleContent&gt;
+ * &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema&gt;string"&gt;
+ * &lt;attribute name="length" use="required" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
+ * &lt;attribute name="mass" use="required" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
+ * &lt;attribute name="checksum" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;attribute name="modified" use="required" type="{http://www.w3.org/2001/XMLSchema}date" /&gt;
+ * &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
+ * &lt;attribute name="precursor" type="{http://www.w3.org/2001/XMLSchema}boolean" /&gt;
+ * &lt;attribute name="fragment"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="single"/&gt;
+ * &lt;enumeration value="multiple"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;/extension&gt;
+ * &lt;/simpleContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
* Describes the source of the sequence according to the citation.
* Equivalent to the flat file RC-line.
*
- * <p>Java class for sourceDataType complex type.
+ * <p>Java class for sourceDataType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="sourceDataType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <choice maxOccurs="unbounded">
- * <element name="strain">
- * <complexType>
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </extension>
- * </simpleContent>
- * </complexType>
- * </element>
- * <element name="plasmid">
- * <complexType>
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </extension>
- * </simpleContent>
- * </complexType>
- * </element>
- * <element name="transposon">
- * <complexType>
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </extension>
- * </simpleContent>
- * </complexType>
- * </element>
- * <element name="tissue">
- * <complexType>
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </extension>
- * </simpleContent>
- * </complexType>
- * </element>
- * </choice>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="sourceDataType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;choice maxOccurs="unbounded"&gt;
+ * &lt;element name="strain"&gt;
+ * &lt;complexType&gt;
+ * &lt;simpleContent&gt;
+ * &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema&gt;string"&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/extension&gt;
+ * &lt;/simpleContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;element name="plasmid"&gt;
+ * &lt;complexType&gt;
+ * &lt;simpleContent&gt;
+ * &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema&gt;string"&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/extension&gt;
+ * &lt;/simpleContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;element name="transposon"&gt;
+ * &lt;complexType&gt;
+ * &lt;simpleContent&gt;
+ * &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema&gt;string"&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/extension&gt;
+ * &lt;/simpleContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;element name="tissue"&gt;
+ * &lt;complexType&gt;
+ * &lt;simpleContent&gt;
+ * &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema&gt;string"&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/extension&gt;
+ * &lt;/simpleContent&gt;
+ * &lt;/complexType&gt;
+ * &lt;/element&gt;
+ * &lt;/choice&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the strainOrPlasmidOrTransposon property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the strainOrPlasmidOrTransposon property.
+ * This is why there is not a <CODE>set</CODE> method for the strainOrPlasmidOrTransposon property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getStrainOrPlasmidOrTransposon().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link SourceDataType.Strain }
* {@link SourceDataType.Plasmid }
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </extension>
- * </simpleContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;simpleContent&gt;
+ * &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema&gt;string"&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/extension&gt;
+ * &lt;/simpleContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </extension>
- * </simpleContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;simpleContent&gt;
+ * &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema&gt;string"&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/extension&gt;
+ * &lt;/simpleContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </extension>
- * </simpleContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;simpleContent&gt;
+ * &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema&gt;string"&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/extension&gt;
+ * &lt;/simpleContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- * </extension>
- * </simpleContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;simpleContent&gt;
+ * &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema&gt;string"&gt;
+ * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
+ * &lt;/extension&gt;
+ * &lt;/simpleContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the evidence property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
+ * This is why there is not a <CODE>set</CODE> method for the evidence property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEvidence().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
* Describes the source of the data using a database cross-reference (or a 'ref' attribute when the source cannot be found in a public data source, such as PubMed, and is cited only within the UniProtKB entry).
*
- * <p>Java class for sourceType complex type.
+ * <p>Java class for sourceType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="sourceType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType" minOccurs="0"/>
- * </sequence>
- * <attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="sourceType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
* Indicates whether the name of a plasmid is known or unknown.
*
- * <p>Java class for statusType complex type.
+ * <p>Java class for statusType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="statusType">
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="status" default="known">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="known"/>
- * <enumeration value="unknown"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * </extension>
- * </simpleContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="statusType"&gt;
+ * &lt;simpleContent&gt;
+ * &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema&gt;string"&gt;
+ * &lt;attribute name="status" default="known"&gt;
+ * &lt;simpleType&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
+ * &lt;enumeration value="known"/&gt;
+ * &lt;enumeration value="unknown"/&gt;
+ * &lt;/restriction&gt;
+ * &lt;/simpleType&gt;
+ * &lt;/attribute&gt;
+ * &lt;/extension&gt;
+ * &lt;/simpleContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
* Describes the subcellular location and optionally the topology and orientation of a molecule.
*
- * <p>Java class for subcellularLocationType complex type.
+ * <p>Java class for subcellularLocationType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType name="subcellularLocationType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="location" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded"/>
- * <element name="topology" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="orientation" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType name="subcellularLocationType"&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element name="location" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded"/&gt;
+ * &lt;element name="topology" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;element name="orientation" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the location property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the location property.
+ * This is why there is not a <CODE>set</CODE> method for the location property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getLocation().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
* Gets the value of the topology property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the topology property.
+ * This is why there is not a <CODE>set</CODE> method for the topology property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getTopology().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
/**
* Gets the value of the orientation property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the orientation property.
+ * This is why there is not a <CODE>set</CODE> method for the orientation property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getOrientation().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
/**
- * <p>Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element ref="{http://uniprot.org/uniprot}entry" maxOccurs="unbounded"/>
- * <element ref="{http://uniprot.org/uniprot}copyright" minOccurs="0"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <pre>
+ * &lt;complexType&gt;
+ * &lt;complexContent&gt;
+ * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt;
+ * &lt;element ref="{http://uniprot.org/uniprot}entry" maxOccurs="unbounded"/&gt;
+ * &lt;element ref="{http://uniprot.org/uniprot}copyright" minOccurs="0"/&gt;
+ * &lt;/sequence&gt;
+ * &lt;/restriction&gt;
+ * &lt;/complexContent&gt;
+ * &lt;/complexType&gt;
+ * </pre>
*
*
*/
/**
* Gets the value of the entry property.
*
- * <p>
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the entry property.
+ * This is why there is not a <CODE>set</CODE> method for the entry property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
+ * <pre>
* getEntry().add(newItem);
- * </pre>
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link Entry }
*
//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2019.04.05 at 08:01:44 AM BST
+// Generated on: 2022.02.07 at 04:44:21 PM GMT
//
@javax.xml.bind.annotation.XmlSchema(namespace = "http://uniprot.org/uniprot", elementFormDefault = javax.xml.bind.annotation.XmlNsForm.QUALIFIED)
import static org.testng.Assert.assertEquals;
+import java.awt.Color;
+
+import org.testng.annotations.Test;
+
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.Sequence;
import jalview.viewmodel.OverviewDimensions;
import jalview.viewmodel.OverviewDimensionsShowHidden;
import jalview.viewmodel.ViewportRanges;
-
-import java.awt.Color;
-
-import org.testng.annotations.Test;
public class OverviewRendererTest
{
@Test
public void testGetColumnColourFromSequence()
{
- OverviewResColourFinder cf = new OverviewResColourFinder(false,
- Color.PINK, Color.green); // gapColour, hiddenColour
+ // gapColour, residueColour, hiddenColour
+ OverviewResColourFinder cf = new OverviewResColourFinder(
+ Color.PINK, Color.white, Color.green);
Sequence seq1 = new Sequence("seq1", "PQ-RL-");
Sequence seq2 = new Sequence("seq2", "FVE");
AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 });
import static org.testng.AssertJUnit.assertEquals;
+import java.awt.Color;
+import java.util.ArrayList;
+
+import org.testng.annotations.BeforeClass;
+import org.testng.annotations.Test;
+
import jalview.bin.Cache;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceI;
import jalview.gui.AlignViewport;
import jalview.gui.JvOptionPane;
+import jalview.gui.OverviewCanvas;
import jalview.schemes.ColourSchemeI;
import jalview.schemes.UserColourScheme;
import jalview.schemes.ZappoColourScheme;
-import java.awt.Color;
-import java.util.ArrayList;
-
-import org.testng.annotations.BeforeClass;
-import org.testng.annotations.Test;
-
public class OverviewResColourFinderTest
{
// gaps are grey, residues white
assertEquals(Color.white, rcf.getResidueColour(true,
- av.getResidueShading(),
- null, seq, 0, null));
- assertEquals(Color.lightGray, rcf
- .getResidueColour(true, av.getResidueShading(), null, seq, 2,
- null));
+ av.getResidueShading(), null, seq, 0, null));
+ assertEquals(Color.lightGray, rcf.getResidueColour(true,
+ av.getResidueShading(), null, seq, 2, null));
// unaffected by showBoxes setting
assertEquals(Color.white, rcf.getResidueColour(false,
av.setGlobalColourScheme(new ZappoColourScheme());
// @see ResidueProperties.zappo
- assertEquals(Color.pink,
- rcf.getResidueColour(true, av.getResidueShading(),
- null, seq, 0, null)); // M
- assertEquals(Color.green,
- rcf.getResidueColour(true, av.getResidueShading(),
- null, seq, 2, null)); // T
- assertEquals(Color.magenta,
- rcf.getResidueColour(true, av.getResidueShading(),
- null, seq, 5, null)); // G
- assertEquals(Color.orange,
- rcf.getResidueColour(true, av.getResidueShading(),
- null, seq, 12, null)); // F
+ assertEquals(Color.pink, rcf.getResidueColour(true,
+ av.getResidueShading(), null, seq, 0, null)); // M
+ assertEquals(Color.green, rcf.getResidueColour(true,
+ av.getResidueShading(), null, seq, 2, null)); // T
+ assertEquals(Color.magenta, rcf.getResidueColour(true,
+ av.getResidueShading(), null, seq, 5, null)); // G
+ assertEquals(Color.orange, rcf.getResidueColour(true,
+ av.getResidueShading(), null, seq, 12, null)); // F
// gap colour not specified so gaps are lightGray
- assertEquals(Color.lightGray, rcf
- .getResidueColour(true, av.getResidueShading(), null, seq, 3,
- null));
+ assertEquals(Color.lightGray, rcf.getResidueColour(true,
+ av.getResidueShading(), null, seq, 3, null));
// unaffected by showBoxes setting
assertEquals(Color.pink, rcf.getResidueColour(false,
av.getResidueShading(), null, seq, 12, null)); // F
// gap colour not specified so gaps are lightGray
- assertEquals(Color.lightGray, rcf
- .getResidueColour(false, av.getResidueShading(), null, seq, 3,
- null));
+ assertEquals(Color.lightGray, rcf.getResidueColour(false,
+ av.getResidueShading(), null, seq, 3, null));
}
av.setGlobalColourScheme(new UserColourScheme(newColours));
// gap colour not specified so gaps are lightGray
- assertEquals(Color.lightGray, rcf
- .getResidueColour(true, av.getResidueShading(), null, seq, 3,
- null));
+ assertEquals(Color.lightGray, rcf.getResidueColour(true,
+ av.getResidueShading(), null, seq, 3, null));
newColours[23] = Color.pink;
av.setGlobalColourScheme(new UserColourScheme(newColours));
// gap colour specified as pink
assertEquals(Color.pink, rcf.getResidueColour(true,
- av.getResidueShading(),
- null, seq, 3, null));
+ av.getResidueShading(), null, seq, 3, null));
// unaffected by showBoxes setting
// gap colour not specified so gaps are lightGray
{
SequenceI seq = new Sequence("name", "MA--TVLGSPRAPAFF");
AlignmentI al = new Alignment(new SequenceI[] { seq });
-
+
ColourSchemeI cs = new ZappoColourScheme();
ArrayList<SequenceI> seqlist = new ArrayList<>();
seqlist.add(seq);
al.addGroup(sg);
SequenceGroup[] groups = new SequenceGroup[1];
groups[0] = sg;
-
+
final AlignViewport av = new AlignViewport(al);
ResidueColourFinder rcf = new OverviewResColourFinder();
-
+
// G in group specified as magenta in Zappo
assertEquals(Color.magenta, rcf.getResidueColour(false,
av.getResidueShading(), groups, seq, 7, null));
av.getResidueShading(), groups, seq, 2, null));
// use legacy colouring
- rcf = new OverviewResColourFinder(true, Color.blue, Color.red);
-
+ rcf = new OverviewResColourFinder(Color.white, Color.lightGray, Color.red);
+
// G in group specified as magenta in Zappo
assertEquals(Color.magenta, rcf.getResidueColour(false,
av.getResidueShading(), groups, seq, 7, null));
av.getResidueShading(), groups, seq, 2, null));
// use new colouring
- rcf = new OverviewResColourFinder(false, Color.blue, Color.red);
+ rcf = new OverviewResColourFinder(Color.blue, Color.white, Color.red);
// G in group specified as magenta in Zappo
assertEquals(Color.magenta, rcf.getResidueColour(false,
// gaps gap colour
c = rcf.getBoxColour(shader, seq, 3);
- assertEquals(
- jalview.renderer.OverviewResColourFinder.OVERVIEW_DEFAULT_GAP,
- c);
+ assertEquals(OverviewCanvas.OVERVIEW_DEFAULT_GAP, c);
// legacy colouring set explicitly via constructor
- rcf = new OverviewResColourFinder(true, Color.blue, Color.red);
+ rcf = new OverviewResColourFinder(Color.white, Color.lightGray, Color.red);
shader = new ResidueShader();
// residues light gray
// gaps gap colour
c = rcf.getBoxColour(shader, seq, 3);
- assertEquals(
- jalview.renderer.OverviewResColourFinder.OVERVIEW_DEFAULT_GAP,
- c);
+ assertEquals(OverviewCanvas.OVERVIEW_DEFAULT_GAP, c);
// non legacy colouring with colour scheme
- rcf = new OverviewResColourFinder(false, Color.blue, Color.red);
+ rcf = new OverviewResColourFinder(Color.blue, Color.white, Color.red);
shader = new ResidueShader(new ZappoColourScheme());
// M residue pink
assertEquals(Color.blue, c);
// legacy colouring with colour scheme
- rcf = new OverviewResColourFinder(true, Color.blue, Color.red);
+ rcf = new OverviewResColourFinder(Color.white, Color.lightGray, Color.red);
// M residue pink
c = rcf.getBoxColour(shader, seq, 0);
git://source.jalview.org / jalview.git / commitdiff