+ AAStructureBindingModel binding, AlignmentViewPanel viewPanel)
+ {
+ SequenceRenderer sr = binding.getSequenceRenderer(viewPanel);
+ SequenceI[][] sequence = binding.getSequence();
+ boolean hideHiddenRegions = binding.isShowAlignmentOnly()
+ && binding.isHideHiddenRegions();
+
+ return getColourBySequenceCommand(ssm, files, sequence, sr,
+ hideHiddenRegions, viewPanel);
+ }
+
+ static StructureMappingcommandSet[] getColourBySequenceCommand(
+ StructureSelectionManager ssm, String[] files,