updateRunning = true;
}
- Thread thread = new Thread(this, "OverviewUpdateThread");
+ Thread thread = new Thread(this, "OverviewUpdate");
thread.start();
repaint();
updateRunning = false;
MessageManager.getString("label.principal_component_analysis"),
475, 400);
- Thread worker = new Thread(this, "PCACalcThread");
+ Thread worker = new Thread(this, "PCACalc");
worker.start();
}
ScoreModelI scoreModel = ScoreModels.getInstance()
.getDefaultModel(false);
pcaModel.setScoreModel(scoreModel);
- new Thread(this, "PCARecalcThread").start();
+ new Thread(this, "PCARecalc").start();
}
}
else if (evt.getSource() == protSetting)
ScoreModelI scoreModel = ScoreModels.getInstance()
.getDefaultModel(true);
pcaModel.setScoreModel(scoreModel);
- new Thread(this, "PCARecalcThread").start();
+ new Thread(this, "PCARecalc").start();
}
}
}
frame.addWindowListener(this);
- Thread worker = new Thread(this, "RedundancyCalcThread");
+ Thread worker = new Thread(this, "RedundancyCalc");
worker.start();
}
running--;
}
}
- }, "FeatureFetcherThread").start();
+ }, "FeatureFetcher").start();
}
public synchronized boolean allFinished()
// exit thread if Chimera Viewer is closed in Jalview
}
}
- }, "ChimeraMonitorThread");
+ }, "ChimeraMonitor");
chimeraMonitor.start();
}
public void transferToSequenceFetcher(String ids)
{
seqFetcher.getTextArea().setText(ids);
- Thread worker = new Thread(seqFetcher, "GFTSSeqFetcherThread");
+ Thread worker = new Thread(seqFetcher, "GFTSSeqFetcher");
worker.start();
}
String ids = selectedIds.toString();
// System.out.println(">>>>>>>>>>>>>>>> selected Ids: " + ids);
seqFetcher.getTextArea().setText(ids);
- Thread worker = new Thread(seqFetcher, "PDBFTSSeqFetcherThread");
+ Thread worker = new Thread(seqFetcher, "PDBFTSSeqFetcher");
worker.start();
delayAndEnableActionButtons();
}
}
buildingMenu = false;
}
- }, "BuildWebServiceThread").start();
+ }, "BuildWebService").start();
}
final String source)
{
new Thread(CrossRefAction.showProductsFor(sel, _odna, source, this),
- "CrossReferencesThread")
+ "CrossReferences")
.start();
}
ex.printStackTrace();
}
}
- }, "DropFileThread").start();
+ }, "DropFile").start();
}
}
});
dbRefFetcher.fetchDBRefs(false);
}
- }, "BuildFetchDBMenuThread").start();
+ }, "BuildFetchDBMenu").start();
}
setSize(400, 400); // probably should be a configurable/dynamic default here
initMenus();
addingStructures = false;
- worker = new Thread(this, "OpenJmolThread");
+ worker = new Thread(this, "OpenJmol");
worker.start();
this.addInternalFrameListener(new InternalFrameAdapter()
initMenus();
addingStructures = false;
- worker = new Thread(this, "OpenChimeraThread");
+ worker = new Thread(this, "OpenChimera");
worker.start();
this.addInternalFrameListener(new InternalFrameAdapter()
// Starting two seperate threads to read from the PipedInputStreams
//
- reader = new Thread(this, "ConsoleReader1Thread");
+ reader = new Thread(this, "ConsoleReader1");
reader.setDaemon(true);
reader.start();
//
- reader2 = new Thread(this, "ConsoleReader2Thread");
+ reader2 = new Thread(this, "ConsoleReader2");
reader2.setDaemon(true);
reader2.start();
// and a thread to append text to the textarea
- textAppender = new Thread(this, "ConsoleTextAppendThread");
+ textAppender = new Thread(this, "ConsoleTextAppend");
textAppender.setDaemon(true);
textAppender.start();
}
// We do it with a seperate Thread becasue we don't wan't to break a Thread
// used by the Console.
System.out.println("\nLets throw an error on this console");
- errorThrower = new Thread(this, "ConsoleErrorLogThread");
+ errorThrower = new Thread(this, "ConsoleErrorLog");
errorThrower.setDaemon(true);
errorThrower.start();
}
{
if (sourceRegistry == null)
{
- Thread worker = new Thread(this, "PaintDasThread");
+ Thread worker = new Thread(this, "PaintDas");
worker.start();
}
}
{
saveProperties(jalview.bin.Cache.applicationProperties);
- Thread worker = new Thread(this, "RepaintDasThread");
+ Thread worker = new Thread(this, "RepaintDas");
worker.start();
}
fileFormat);
Cache.log.debug("Filechooser init thread finished.");
}
- }, "InitFileChooserThread").start();
+ }, "InitFileChooser").start();
// Add the service change listener
changeSupport.addJalviewPropertyChangeListener("services",
new PropertyChangeListener()
Desktop.instance.setProgressBar(null, now);
jvnews.showNews();
}
- }, "ShowNewsWindowThread").start();
+ }, "ShowNewsWindow").start();
}
}
}
{
new SplashScreen(true);
}
- }, "ShowAboutMenuThread").start();
+ }, "ShowAboutMenu").start();
}
public StringBuffer getAboutMessage(boolean shortv)
}
setProgressBar(null, choice.hashCode());
}
- }, "SaveJalviewProjectThread").start();
+ }, "SaveJalviewProject").start();
}
}
}
setProgressBar(null, choice.hashCode());
}
- }, "LoadJalviewProjectThread").start();
+ }, "LoadJalviewProject").start();
}
}
dsktp.v_client.initial_update();
}
- }, "VamsasSessionThread");
+ }, "VamsasSession");
rthr.start();
}
};
{
UserQuestionnaireCheck jvq = new UserQuestionnaireCheck(url);
// javax.swing.SwingUtilities.invokeLater(jvq);
- new Thread(jvq, "CheckQuestionnaireThread").start();
+ new Thread(jvq, "CheckQuestionnaire").start();
}
public void checkURLLinks()
this.showMemoryUsage = showMemory;
if (showMemory)
{
- Thread worker = new Thread(this, "ShowMemoryUsageThread");
+ Thread worker = new Thread(this, "ShowMemoryUsage");
worker.start();
}
repaint();
}
// JAL-940 - disabled JWS1 service configuration - always start discoverer
// until we phase out completely
- (t0 = new Thread(discoverer, "DiscovererThread")).start();
+ (t0 = new Thread(discoverer, "Discoverer")).start();
}
if (Cache.getDefault("SHOW_JWS2_SERVICES", true))
progress.setProgressBar(null, this.hashCode());
}
}
- }, "OpenURLThread").start();
+ }, "OpenURL").start();
}
public static WsParamSetManager wsparamManager = null;
frame.setVisible(true);
}
- }, "UnblockedDialogThread").start();
+ }, "UnblockedDialog").start();
}
else
{
return;
}
- Thread thread = new Thread(this, "UpdateOverviewThread");
+ Thread thread = new Thread(this, "UpdateOverview");
thread.start();
repaint();
showLink(url);
}
- }, "ShowURLMenuThread").start();
+ }, "ShowURLMenu").start();
}
});
}
}
- }, "ShowGroupURLMenuThread").start();
+ }, "ShowGroupURLMenu").start();
}
});
slider.setMaximum(100);
slider.setValue(100);
- Thread worker = new Thread(this, "CreateRedundancyPanelThread");
+ Thread worker = new Thread(this, "CreateRedundancyPanel");
worker.start();
frame = new JInternalFrame();
{
this.interactiveDialog = interactive;
// show a splashscreen that will disapper
- Thread t = new Thread(this, "ShowSplashScreenThread");
+ Thread t = new Thread(this, "ShowSplashScreen");
t.start();
}
// and call ourselves again.
addStructure(pdbentry, seqs, chains, align, alignFrame);
}
- }, "Adding3DStructureQueueThread").start();
+ }, "Adding3DStructureQueue").start();
return;
}
}
addingStructures = true;
_started = false;
alignAddedStructures = align;
- worker = new Thread(this, "Adding3DStructureThread");
+ worker = new Thread(this, "Adding3DStructure");
worker.start();
return;
}
*/
void startPrinting()
{
- Thread thread = new Thread(this, "PrintTreeCanvasThread");
+ Thread thread = new Thread(this, "PrintTreeCanvas");
thread.start();
}
Cache.log.info("Jalview finished updating to the Vamsas Session.");
}
- }, "UpdateVamsasThread");
+ }, "UpdateVamsas");
udthread.start();
}
AnimatedPanel ap = new AnimatedPanel();
titlePanel.add(ap, BorderLayout.CENTER);
- Thread thread = new Thread(ap, "AnimatedPanelThread");
+ Thread thread = new Thread(ap, "AnimatedPanel");
thread.start();
final WebserviceInfo thisinfo = this;
frame.addInternalFrameListener(
updateWsMenuConfig(false);
refreshWsMenu(true);
}
- }, "RefreshWebServicesThread").start();
+ }, "RefreshWebServices").start();
}
progressBar.setVisible(false);
validate();
}
- }, "RefreshWebServicesMenuProgressBarThread").start();
+ }, "RefreshWebServicesMenuProgressBar").start();
}
else
Desktop.instance.setProgressBar(null, ct);
}
- }, "RefreshWebServicesMenuThread").start();
+ }, "RefreshWebServicesMenu").start();
}
}
updateWsMenuConfig(false);
refreshWsMenu(showProgressInDialog);
}
- }, "UpdateAndRefreshWebServicesMenuThread").start();
+ }, "UpdateAndRefreshWebServicesMenu").start();
}
}
e.printStackTrace();
return;
}
- new Thread(this, "ExportBioJsHTMLThread").start();
+ new Thread(this, "ExportBioJsHTML").start();
}
this.protocol = protocol;
this.format = format;
- final Thread loader = new Thread(this, "LoadFileThread");
+ final Thread loader = new Thread(this, "LoadFile");
SwingUtilities.invokeLater(new Runnable()
{
*/
protected AlignFrame _LoadFileWaitTillLoaded()
{
- Thread loader = new Thread(this, "LoadFileWithWaitingThread");
+ Thread loader = new Thread(this, "LoadFileWithWaiting");
loader.start();
while (loader.isAlive())
e.printStackTrace();
return;
}
- new Thread(this, "ExportSvgHTMLThread").start();
+ new Thread(this, "ExportSvgHTML").start();
}
public int printUnwrapped(int pwidth, int pheight, int pi,
if (executor == null)
{
executor = new Thread(new JSFunctionExec(jvlite),
- "JavaScriptThread");
+ "JavaScript");
executor.start();
}
synchronized (jsExecQueue)
// Starting two seperate threads to read from the PipedInputStreams
//
- reader = new Thread(this, "AWTConsoleReader1Thread");
+ reader = new Thread(this, "AWTConsoleReader1");
reader.setDaemon(true);
reader.start();
//
- reader2 = new Thread(this, "AWTConsoleReader2Thread");
+ reader2 = new Thread(this, "AWTConsoleReader2");
reader2.setDaemon(true);
reader2.start();
// We do it with a seperate Thread becasue we don't wan't to break a Thread
// used by the Console.
System.out.println("\nLets throw an error on this console");
- errorThrower = new Thread(this, "AWTConsoleErrorLogThread");
+ errorThrower = new Thread(this, "AWTConsoleErrorLog");
errorThrower.setDaemon(true);
errorThrower.start();
}
// TODO can we not simply write
// if (waitTillFinished) { run(); } else { new Thread(this).start(); }
- Thread thread = new Thread(this, "FetchDBRefThread");
+ Thread thread = new Thread(this, "FetchDBRef");
thread.start();
running = true;
if (reply == JvOptionPane.YES_OPTION)
{
Thread thread = new Thread(new FetchDBRefs(),
- "FetchDBReferenceManagerThread");
+ "FetchDBReferenceManager");
thread.start();
}
else
private void _startFetching()
{
running = true;
- new Thread(new FetchSeqFeatures(), "FetchSeqFeaturesThread").start();
+ new Thread(new FetchSeqFeatures(), "FetchSeqFeatures").start();
}
class FetchSeqFeatures implements Runnable
}
qrys.add(squery);
- new Thread(squery, "JabaQueryThread").start();
+ new Thread(squery, "JabaQuery").start();
}
boolean finished = true;
do
changeSupport.firePropertyChange("services",
new Vector<Jws2Instance>(), services);
};
- }, "LoadPreferredServiceThread").start();
+ }, "LoadPreferredService").start();
}
});
git://source.jalview.org / jalview.git / commitdiff