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Merge branch 'feature/JAL-1333' into features/JAL-1333
[jalview.git] / src /
2014-04-21 Jim ProcterJAL-1355 JAL-1466 i18n for flanking sequence menu entry... tree | commitdiff
2014-04-21 Jim ProcterJAL-741 (poss related JAL-971) - fix NPE raised when... tree | commitdiff
2014-04-21 Jim ProcterJAL-1476 JAL-1016 avoid NPE messiness if structures... tree | commitdiff
2014-04-21 Jim Procterdon't unhook existing group associated annotation JAL... tree | commitdiff
2014-04-21 Jim Procterfix for JAL-1478 tree | commitdiff
2014-04-21 Jim ProcterJAL-1476 - don't send broken commands to Jmol when... tree | commitdiff
2014-04-21 Jim ProcterJAL-1477 first implementation of 'View all representati... tree | commitdiff
2014-04-21 Jim ProcterJAL-1466 import full length sequence to dataset sequenc... tree | commitdiff
2014-04-21 Jim ProcterJAL-1466 flag and jalview_properties setting to control... tree | commitdiff
2014-04-21 Jim ProcterJAL-1466 improved test and patched off by one that... tree | commitdiff
2014-04-21 Jim ProcterJAL-1466 new calculation menu option to recover the... tree | commitdiff
2014-04-21 Jim Proctertidy imports tree | commitdiff
2014-04-21 Jim Procterpatch v2 for JAL-1474 add the newly recovered dataset... tree | commitdiff
2014-04-21 Jim Procterpatch v1 for JAL-1474 - make sure we actually set the... tree | commitdiff
2014-04-21 Jim ProcterJAL-1474 note about buggy 'merge sequence' operation... tree | commitdiff
2014-04-21 Jim ProcterJAL-1473 tree calcs performed with ScoreModelI instances tree | commitdiff
2014-04-21 Jim Procterdon't finness the alignment annotation modification... tree | commitdiff
2014-04-21 Jim Procterpatch for JAL-1465 - set min/max thresholds for each... tree | commitdiff
2014-04-21 Jim ProcterJAL-1473 menu entries for different score models availa... tree | commitdiff
2014-04-21 Jim ProcterJAL-1473 provide Amino acid physicochemical conservatio... tree | commitdiff
2014-04-21 Jim ProcterJAL-1473 show available score matrices for use in PCA... tree | commitdiff
2014-04-21 Jim ProcterJAL-1473 refactor score matrices and tree score calcula... tree | commitdiff
2014-04-06 Jim Procterfix for JAL-1464 avoid NPE with per-sequence annotation... tree | commitdiff
2014-04-05 Jim ProcterMerge branch 'r281_JAL-1211' into develop tree | commitdiff
2014-04-05 Jim ProcterMerge branch 'r281_JAL-1211' into Release_2_8_1_Branch tree | commitdiff
2014-04-04 Jim ProcterJAL-1211 - set annotation panel height according to... tree | commitdiff
2014-04-04 Jim ProcterJAL-1211 - pick up site-defined defined window geometry... tree | commitdiff
2014-04-04 Jim Procterfix for JAL-1461 - check that filetype setting in brows... tree | commitdiff
2014-04-04 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into Release_2... tree | commitdiff
2014-04-04 Jim ProcterJAL-1335 typo and 'edit' action tree | commitdiff
2014-03-20 jprocterMerge branch 'JAL-1459_dnd' into develop tree | commitdiff
2014-03-20 jprocterJAL-1459 ensure we notify the drop handler that we... tree | commitdiff
2014-02-26 Jim ProcterMerge branch 'JAL-1226' into develop tree | commitdiff
2014-02-26 Jim Procterfix for JAL-1226 tree | commitdiff
2014-02-26 Jim ProcterMerge branch 'JAL-686' into develop tree | commitdiff
2014-02-26 Jim ProcterJAL-1457 refactoring to explore why '-' appear in annot... tree | commitdiff
2014-02-26 Jim Procterfix for JAL-686 - don't trim spaces before creating... tree | commitdiff
2014-02-25 Jim ProcterMerge branch 'JAL-1454_patch' into develop tree | commitdiff
2014-02-25 Jim ProcterJAL-1355 typo in key tree | commitdiff
2014-02-25 Jim ProcterJAL-1454 catch exceptions during calculation and report... tree | commitdiff
2014-02-25 Jim ProcterJAL-1454 increase max for tqli iterations and throw... tree | commitdiff
2014-02-21 Jim ProcterMerge branch 'JAL-1364_patch' into develop tree | commitdiff
2014-02-21 Jim Procterpatch for JAL-1449 - continuance of JAL-1364 - check... tree | commitdiff
2014-02-21 Jim ProcterMerge branch 'pathc_JAL-1354' into develop tree | commitdiff
2014-02-21 Jim ProcterJAL-1448 reinstate non-locale sensitive code for readin... tree | commitdiff
2014-02-21 Jim ProcterJAL-1354 typo tree | commitdiff
2014-02-21 Jim ProcterJAL-1354 use real var-args method signature to avoid... tree | commitdiff
2014-02-20 Jim ProcterMerge branch 'JAL-1447' into develop tree | commitdiff
2014-02-20 Jim ProcterMerge branch 'JAL-1447' into Release_2_8_1_Branch tree | commitdiff
2014-02-20 Jim ProcterJAL-1447 patch to correctly recognise FASTA files conta... tree | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop tree | commitdiff
2014-02-18 Jim ProcterJAL-1445 (shift+) double click on feature type in deskt... tree | commitdiff
2014-02-18 Jim ProcterJAL-1446 use popup event trigger instead of right-click... tree | commitdiff
2014-02-17 Jim ProcterJAL-1445 added menu items to select containing/non... tree | commitdiff
2014-02-17 Jim ProcterJAL-1445 ported routine for selecting containing/non... tree | commitdiff
2014-02-17 Jim ProcterJAL-1445 expose columnSelection setter. tree | commitdiff
2014-02-17 Jim ProcterJAL-535 interface for GUI state update methods that... tree | commitdiff
2014-02-03 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into try_r20b1... tree | commitdiff
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 natasha's name on applet author list tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2014-01-27 Jim ProcterJAL-1430 mfa added as a known extension for FASTA files tree | commitdiff
2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs_r281' into develop tree | commitdiff
2014-01-13 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_... tree | commitdiff
2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs' into JAL-1422_srs_r281 tree | commitdiff
2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs' into Release_2_8_Branch tree | commitdiff
2014-01-13 Jim ProcterJAL-1422 update any existing configuration to replace... tree | commitdiff
2014-01-13 Jim ProcterJAL-1422 change default link to EMBL-EBI Search tree | commitdiff
2014-01-07 Jim ProcterMerge branch 'fix_JAL-1423' into develop tree | commitdiff
2014-01-07 Jim ProcterMerge branch 'fix_JAL-1423' into Release_2_8_1_Branch tree | commitdiff
2014-01-07 Jim ProcterJAL-1423 - console error reporting and graceful handlin... tree | commitdiff
2013-12-25 darolmarJAL-1355 (basic i18n support) tree | commitdiff
2013-11-07 Jim ProcterMerge branch 'JAL-1286' into develop tree | commitdiff
2013-11-07 Jim ProcterMerge branch 'JAL-1286' into Release_2_8_1_Branch tree | commitdiff
2013-11-07 Jim ProcterJAL-1286 check if local file ends with .gz and opens... tree | commitdiff
2013-10-17 Jim ProcterMerge branch 'JAL-1397' into develop tree | commitdiff
2013-10-17 Jim Procterfix for JAL-1398 - original colourscheme is enabled... tree | commitdiff
2013-10-17 Jim ProcterJAL-1233 TODO concerning the way we propagate annotatio... tree | commitdiff
2013-10-17 Jim ProcterJAL-1397 make sure annotation colourscheme is up to... tree | commitdiff
2013-10-17 Jim ProcterJAL-1397 store colour by sequence and originalColour... tree | commitdiff
2013-10-17 Jim ProcterJAL-1397 make sure ColourschemeI instances are up to... tree | commitdiff
2013-10-17 Jim ProcterJAL-1397 propagate any consensus/conservation coloursch... tree | commitdiff
2013-10-17 Jim ProcterJAL-1397 getters for originalColours flag tree | commitdiff
2013-10-16 Jim ProcterMerge branch 'JAL-1395' into develop tree | commitdiff
2013-10-16 Jim ProcterJAL-1395 do not calculate non-gap consensus when no... tree | commitdiff
2013-10-15 Jim Procterworkaround for JAL-1395 tree | commitdiff
2013-10-15 Jim ProcterJAL-1159 Merging 2.8.1 patches and Anne Menards work... tree | commitdiff
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1 tree | commitdiff
2013-10-11 Jim ProcterJAL-1164 regression on JAL-1292 use bitset to mark... tree | commitdiff
2013-10-11 Jim ProcterJAL-1164 regression on JAL-1292 use bitset to mark... tree | commitdiff
2013-10-11 Jim ProcterMerge branch 'JAL-1164_disorderforselection' into Relea... tree | commitdiff
2013-10-11 Jim ProcterJAL-1164 scope bySequence analysis methods to start... tree | commitdiff
2013-10-11 Jim ProcterJAL-1114 javadoc tree | commitdiff
2013-10-11 Jim ProcterJAL-1114 promote start/end attributes to gettable field... tree | commitdiff
2013-10-11 Jim ProcterJAL-1114 API javadoc tree | commitdiff
2013-10-11 Jim ProcterJAL-1164 only predict on currently selected sequences... tree | commitdiff
2013-10-11 Jim ProcterJAL-1385 expose core view model methods in interface tree | commitdiff
2013-10-11 Jim ProcterJAL-1354 watch for exceptions when initialising (Securi... tree | commitdiff
2013-10-08 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_... tree | commitdiff
2013-10-08 Jim ProcterJAL-1384 Create Group in selection popup menu tree | commitdiff
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