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Merge branch 'feature/JAL-1333' into features/JAL-1333
[jalview.git] / src /
2014-06-23 Jim ProcterJAL-1526 simple function to write a snapshot of the... tree | commitdiff
2014-06-12 Jim ProcterMerge branch 'hotfix/JAL-1524' into Release_2_8_2_Branch tree | commitdiff
2014-06-12 Jim ProcterJAL-1524 fix tree | commitdiff
2014-06-10 Jim ProcterJAL-1379 a JPred v3.0.1 client via JABA 2.1 tree | commitdiff
2014-06-10 Jim ProcterJAL-1379 allow services with an MSA interface to create... tree | commitdiff
2014-06-10 Jim Proctertidy source tree | commitdiff
2014-06-10 Jim ProcterJAL-1379 refactor Jws2 service client so dynamic servic... tree | commitdiff
2014-06-06 Jim ProcterJAL-1520 fix unicode translation errors. tree | commitdiff
2014-06-06 Jim ProcterJAL-1520 fix unicode translation errors. tree | commitdiff
2014-06-06 Jim ProcterJAL-1519 make the splash screen larger/more readable tree | commitdiff
2014-06-06 Jim ProcterJAL-1519 - tidy build properties management code tree | commitdiff
2014-06-06 Jim ProcterJAL-1519 fix author update issue (doh) tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-06-04 Jim ProcterJAL-952 fixed unresolved conflict breaking build tree | commitdiff
2014-06-04 Jim ProcterJAL-952 fixed unresolved conflict breaking build tree | commitdiff
2014-06-04 Jim ProcterJAL-1355 key typo tree | commitdiff
2014-06-03 Jim ProcterJAL-690 jvp rather than jar for save/restore state... tree | commitdiff
2014-06-03 Jim ProcterJAL-690 JAL-1503 update file types/extensions in Jalvie... tree | commitdiff
2014-06-03 Jim ProcterJAL-1473 exclude score models not compatible with PCA... tree | commitdiff
2014-06-03 Jim ProcterJAL-690 add .jvp as default jalview project filetype tree | commitdiff
2014-06-03 Jim ProcterJAL-1512 comment out for 2.8.1 release tree | commitdiff
2014-06-03 Jim ProcterJAL-1512 fix calculation once again and include score... tree | commitdiff
2014-06-03 Jim ProcterJAL-1473 make it easier to generate HTML documentation... tree | commitdiff
2014-06-02 Jim ProcterJAL-1512 rejig buggy conservation-basesd score matrix... tree | commitdiff
2014-05-28 Jim ProcterJAL-1507 bugfix tree | commitdiff
2014-05-27 Jim ProcterJAL-1507 added loop to throw dummy javascript calls... tree | commitdiff
2014-05-27 Jim ProcterJAL-1402 conditional logic to ensure annotation & label... tree | commitdiff
2014-05-27 Jim ProcterJAL-1508 make default font size 11pt for embedded menus... tree | commitdiff
2014-05-23 Jim ProcterJAL-1445 extend functionality to select or toggle selec... tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-05-13 Jim ProcterMerge branch 'bugfix/JAL-1239' into develop tree | commitdiff
2014-05-13 Jim ProcterJAL-1239 cancelled flag should be checked and counted tree | commitdiff
2014-05-13 Jim ProcterJAL-1239 make doubly sure sub job status is set to... tree | commitdiff
2014-05-12 Jim ProcterMerge branch 'JAL-1397' into develop tree | commitdiff
2014-05-12 Jim ProcterJAL-1397 catch other random version strings tree | commitdiff
2014-05-12 Jim Procterpatch for regression introduced JAL-1397 tree | commitdiff
2014-05-02 Jim ProcterMerge branch 'JAL-1397' into develop tree | commitdiff
2014-05-02 Jim ProcterJAL-1397 JAL-1066 JAL-1233 refactored annotation colour... tree | commitdiff
2014-05-02 Jim ProcterJAL-1369 JAL-1397 version check to support correct... tree | commitdiff
2014-05-02 Jim Procterformatting tree | commitdiff
2014-05-02 Jim ProcterJAL-1233 JAL-1066 fix for JAL-1397 test: allow per... tree | commitdiff
2014-05-01 Jim Procterremove todo tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 formatting and squash NPEs tree | commitdiff
2014-05-01 Jim ProcterJAL-1092 TODO - allow Jalview/JalviewLite to generate... tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 JAL-1397 make AnnotatedCollectionI context... tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and... tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 factory method to... tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 modifiable flag on... tree | commitdiff
2014-05-01 Jim Procterjavadoc tree | commitdiff
2014-05-01 Jim ProcterJAL-1497 check to see if tree structure is ready for... tree | commitdiff
2014-05-01 Jim Procterfix for JAL-1495 - initialise menu entry from current... tree | commitdiff
2014-05-01 Jim Procterfix for JAL-1494 tweaked logic to fix NPEs and modify... tree | commitdiff
2014-05-01 Jim ProcterJAL-969 remove unnecessary overrides tree | commitdiff
2014-05-01 Jim ProcterJAL-961 configure conservation worker from alignment... tree | commitdiff
2014-05-01 Jim ProcterJAL-961 store result of conservation analysis worker... tree | commitdiff
2014-05-01 Jim Proctermake sure valid value for non-gapped calculation with... tree | commitdiff
2014-04-29 Jim ProcterJAL-643 - abstracted colourscheme components to allow... tree | commitdiff
2014-04-29 Jim ProcterMerge branch 'JAL-1340_redundancy' into develop tree | commitdiff
2014-04-28 Jim ProcterJAL-1340 mark redundant sequences as soon as redundancy... tree | commitdiff
2014-04-28 Jim ProcterJAL-1340 simpler and more efficient interactive highlig... tree | commitdiff
2014-04-28 Jim ProcterJAL-1340 ensure slider value wide enough to see three... tree | commitdiff
2014-04-27 Jim ProcterMerge branch 'JAL-1322' into develop tree | commitdiff
2014-04-27 Jim ProcterJAL-1322 avoid rounding error causing non functional... tree | commitdiff
2014-04-27 Jim ProcterJAL-1322 allow slider to reach maximum value for parameter tree | commitdiff
2014-04-27 Jim ProcterJAL-1322 only update slider when return is pressed tree | commitdiff
2014-04-27 Jim ProcterMerge branch 'JAL-952_rnahelix' into Release_2_8_1_Branch tree | commitdiff
2014-04-27 Jim ProcterMerge branch 'JAL-952_rnahelix' into develop tree | commitdiff
2014-04-27 Jim ProcterMerge branch 'JAL-1164_regression' into develop tree | commitdiff
2014-04-27 Jim Procterworkaround for JAL-1319 - catch unexpected NPE thrown... tree | commitdiff
2014-04-27 Jim ProcterJAL-1164 (regression) reinstate 'apply disorder predict... tree | commitdiff
2014-04-27 Jim ProcterJAL-952 JAL-1268 add RNA Helices and T-Coffee to list... tree | commitdiff
2014-04-27 Jim ProcterJAL-952 resolve colour scheme as 'RNA Helices' tree | commitdiff
2014-04-27 Jim ProcterJAL-952 refactor code to select annotation for colourin... tree | commitdiff
2014-04-25 Jim ProcterMerge branch 'JAL-1177_prop_rnasecstr' into develop tree | commitdiff
2014-04-25 Jim Procterfix for JAL-1268 tree | commitdiff
2014-04-25 Jim ProcterJAL-1177 additional saveState calls to write a dataset... tree | commitdiff
2014-04-25 Jim ProcterJAL-1177 patches to loader to cope with dataset only... tree | commitdiff
2014-04-25 Jim ProcterJAL-1177 new flag to write a dataset only jalview XML... tree | commitdiff
2014-04-25 Jim ProcterJAL-1177 allow jalview alignments to be saved that... tree | commitdiff
2014-04-25 Jim ProcterJAL-1177 propagate sequence associated annotation to... tree | commitdiff
2014-04-24 Jim ProcterJAL-1232 fix - ensure display all columns flag is set... tree | commitdiff
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into develop tree | commitdiff
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into Release_2_8... tree | commitdiff
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into Release_2_8... tree | commitdiff
2014-04-23 Jim ProcterJAL-1486 todo for 2.8.2 release tree | commitdiff
2014-04-23 Jim ProcterMerge branch 'jims_marckhacks' into develop tree | commitdiff
2014-04-21 Jim ProcterJAL-1383 scrubbed envision GUI and documentation tree | commitdiff
2014-04-21 Jim ProcterJAL-1355 keys for colours tree | commitdiff
2014-04-21 Jim Procterfix for JAL-1438 tree | commitdiff
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop tree | commitdiff
2014-04-21 Jim ProcterJAL-1473 define defaults for DNA/Protein PCA calculation tree | commitdiff
2014-04-21 Jim ProcterJAL-1485 JAL-1483 show i18n key for different available... tree | commitdiff
2014-04-21 Jim ProcterJAL-1473 JAL-1355 i18n for score model submenu tree | commitdiff
2014-04-21 Jim ProcterJAL-1485 JAL-1473 use compound i18n messages to constru... tree | commitdiff
2014-04-21 Jim ProcterJAL-1485 tree | commitdiff
2014-04-21 Jim ProcterJAL-1484 always update the dataset sequence if 'trimDat... tree | commitdiff
2014-04-21 Jim ProcterJAL-1466 don't include empty columns if no upstream... tree | commitdiff
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