| 2012-03-01 |
jprocter | (JAL-893) update to VARNAv3.9-dev version |
tree | commitdiff |
| 2012-03-01 |
jprocter | Merge branch 'Release_2_7_Branch' into develop |
tree | commitdiff |
| 2012-02-12 |
Jim Procter | (JAL-1016) noted position where race condition occurs |
tree | commitdiff |
| 2012-02-12 |
Jim Procter | (JAL-1022) ensure all Jmol model filenames are normalis... |
tree | commitdiff |
| 2012-02-12 |
Jim Procter | (JAL-1022) reverted to original strategy of escaping... |
tree | commitdiff |
| 2012-02-12 |
Jim Procter | (JAL-1050) ensure all filenames passed in to the load... |
tree | commitdiff |
| 2012-02-12 |
Jim Procter | (JAL-1025 JAL-1022) File based equivalence used to... |
tree | commitdiff |
| 2012-02-12 |
Jim Procter | (JAL-1049) only store state reference for sequence... |
tree | commitdiff |
| 2012-02-12 |
Jim Procter | JAL-1025 JAL-1022 use File based equivalence to map... |
tree | commitdiff |
| 2012-02-12 |
Jim Procter | JAL-715 - remove platform dependent includes |
tree | commitdiff |
| 2011-12-08 |
jprocter | (JAL-1023) ensure filename is properly escaped before... |
tree | commitdiff |
| 2011-12-08 |
jprocter | remove commented lines |
tree | commitdiff |
| 2011-12-08 |
jprocter | simple escape utility class for JAL-1023 patch |
tree | commitdiff |
| 2011-11-21 |
jprocter | Merge branch 'JAL-368_dragabovedesktop' into develop |
tree | commitdiff |
| 2011-11-21 |
jprocter | (JAL-368) ensure window never gets a negative Y coordin... |
tree | commitdiff |
| 2011-11-20 |
jprocter | Merge branch 'patch_JAL-1004' into develop |
tree | commitdiff |
| 2011-11-20 |
jprocter | (JAL-1004) add mouse listener to internal panel |
tree | commitdiff |
| 2011-11-15 |
jprocter | todo |
tree | commitdiff |
| 2011-11-14 |
jprocter | JAL-975 - ensure sequences are padded with gaps before... |
tree | commitdiff |
| 2011-11-09 |
jprocter | Merge branch 'JAL-986_idwidthprefs' into JAL-976_jabaws... |
tree | commitdiff |
| 2011-11-09 |
jprocter | Merge branch 'JAL-986_idwidthprefs' into develop |
tree | commitdiff |
| 2011-11-09 |
jprocter | (JAL-986) rendering to imageMap counts as rendering... |
tree | commitdiff |
| 2011-11-09 |
jprocter | Merge branch 'JAL-986_idwidthprefs' into develop |
tree | commitdiff |
| 2011-11-09 |
jprocter | (JAL-985,JAL-986) documentation and tooltips |
tree | commitdiff |
| 2011-11-09 |
jprocter | (JAL-985,JAL-986) allow different ID margin calculation... |
tree | commitdiff |
| 2011-11-09 |
jprocter | (JAL-985,JAL-986) preference widgets for settings |
tree | commitdiff |
| 2011-11-09 |
jprocter | (JAL-985,JAL-986) preferences documentation |
tree | commitdiff |
| 2011-11-09 |
jprocter | (JAL-986) getter for integer user preference properties |
tree | commitdiff |
| 2011-11-08 |
jprocter | fix NPE when no annotation workers present ... |
tree | commitdiff |
| 2011-11-07 |
jprocter | (JAL-974) - remove sun-internal class and use message... |
tree | commitdiff |
| 2011-11-07 |
jprocter | (JAL-976,JAL-975) disorder client menu items and check... |
tree | commitdiff |
| 2011-11-07 |
jprocter | (JAL-974,JAL-975) refactor common code for a JABAWS... |
tree | commitdiff |
| 2011-11-07 |
jprocter | (JAL-975) formatting |
tree | commitdiff |
| 2011-11-04 |
jprocter | (JAL-975) ensure AACons is only run on protein sequence... |
tree | commitdiff |
| 2011-11-04 |
jprocter | Merge branch 'JAL-980_jmol_patch' into develop |
tree | commitdiff |
| 2011-11-04 |
jprocter | (JAL-980,JAL-982) - applet console only allows console... |
tree | commitdiff |
| 2011-11-04 |
jprocter | (JAL-980) update binding for refactored Jmol constants... |
tree | commitdiff |
| 2011-11-03 |
jprocter | cleanup imports |
tree | commitdiff |
| 2011-11-03 |
jprocter | (JAL-975) client for amino acid conservation service... |
tree | commitdiff |
| 2011-11-03 |
jprocter | (JAL-974,JAL-975) new handler for JABAWS sequence and... |
tree | commitdiff |
| 2011-11-03 |
jprocter | (JAL-976) refactored common code for JABAWS v2 service... |
tree | commitdiff |
| 2011-11-03 |
jprocter | tidy imports |
tree | commitdiff |
| 2011-11-03 |
jprocter | (JAL-978) discover JABA1 and JABA2 services and generat... |
tree | commitdiff |
| 2011-11-03 |
jprocter | (JAL-978) refactored JABAWS2 service handle class to... |
tree | commitdiff |
| 2011-11-03 |
jprocter | (JAL-812,JAL-811) - generic test for 'calculation invol... |
tree | commitdiff |
| 2011-11-03 |
jprocter | (JAL-811) - workers hold references to generated annota... |
tree | commitdiff |
| 2011-11-03 |
jprocter | (JAL-812) javadoc and api method to relayout annotation... |
tree | commitdiff |
| 2011-11-03 |
jprocter | (JAL-811) new 'annotation type' field for marking annot... |
tree | commitdiff |
| 2011-11-03 |
jprocter | ensure we have valid fontMetrics - (NPE was raised... |
tree | commitdiff |
| 2011-10-28 |
jprocter | (JAL-885) RNA helix and purine pyrimidine colouring... |
tree | commitdiff |
| 2011-10-28 |
jprocter | JAL-885 - catch race condition when rna structure width... |
tree | commitdiff |
| 2011-10-28 |
jprocter | JAL-969 - refactor initialisation of automatic annotati... |
tree | commitdiff |
| 2011-10-28 |
jprocter | JAL-885 more efficient calculation and robust for misma... |
tree | commitdiff |
| 2011-10-28 |
jprocter | (JAL-885 JAL-580) ignore invalid RNA structure lines |
tree | commitdiff |
| 2011-10-28 |
jprocter | JAL-902 structure conservation row for applet |
tree | commitdiff |
| 2011-10-28 |
jprocter | (JAL-970) interactive editing of RNA helix annotation... |
tree | commitdiff |
| 2011-10-28 |
jprocter | (JAL-966) efficiency |
tree | commitdiff |
| 2011-10-28 |
jprocter | (JAL-889) ensure annotation row is revalidated after... |
tree | commitdiff |
| 2011-10-28 |
jprocter | (JAL-885,JAL-580) structure consensus should only be... |
tree | commitdiff |
| 2011-10-28 |
jprocter | (JAL-889) ensure latest version of RNA pairlist is... |
tree | commitdiff |
| 2011-10-28 |
jprocter | JAL-580 - display position where wuss parsing error... |
tree | commitdiff |
| 2011-10-28 |
jprocter | JAL-580 ensure WUSS annotation string is up to date... |
tree | commitdiff |
| 2011-10-28 |
jprocter | use stack rather than vector and throw parse exceptions |
tree | commitdiff |
| 2011-10-28 |
jprocter | JAL-580 ensure WUSS annotation is reparsed if necessary... |
tree | commitdiff |
| 2011-10-28 |
jprocter | NPE exception if annotation manually edited |
tree | commitdiff |
| 2011-10-28 |
jprocter | extend API |
tree | commitdiff |
| 2011-10-28 |
jprocter | refactor to use model API |
tree | commitdiff |
| 2011-10-28 |
jprocter | (JAL-963) refactor RNA helix helper class to schemes |
tree | commitdiff |
| 2011-10-27 |
jprocter | (JAL-969) efficiency |
tree | commitdiff |
| 2011-10-27 |
jprocter | (JAL-969) fix logic bug introduced during refactoring |
tree | commitdiff |
| 2011-10-27 |
jprocter | (JAL-969) removed TODOs |
tree | commitdiff |
| 2011-10-27 |
jprocter | renamed menu entry to avoid field name clash |
tree | commitdiff |
| 2011-10-27 |
jprocter | (JAL-969) todo test re refactoring and possible change... |
tree | commitdiff |
| 2011-10-27 |
jprocter | (JAL-969) refactored alignmentViewport base class to... |
tree | commitdiff |
| 2011-10-27 |
jprocter | (JAL-961) refactored consensus and rna structure consen... |
tree | commitdiff |
| 2011-10-27 |
jprocter | (JAL-961) use simplified notification logic to test... |
tree | commitdiff |
| 2011-10-27 |
jprocter | (JAL-961) methods for checking calculation status |
tree | commitdiff |
| 2011-10-27 |
jprocter | (JAL-961) more calculation annotation and result object... |
tree | commitdiff |
| 2011-10-27 |
jprocter | (JAL-967) ensure annotation panel is rendered with... |
tree | commitdiff |
| 2011-10-21 |
jprocter | Refactored alignment viewport to use common base, exten... |
tree | commitdiff |
| 2011-10-21 |
jprocter | new base class to hold core visualization settings... |
tree | commitdiff |
| 2011-10-21 |
jprocter | todo |
tree | commitdiff |
| 2011-10-21 |
jprocter | static convenience methods for constructing and calcula... |
tree | commitdiff |
| 2011-10-21 |
jprocter | use List rather than Vector |
tree | commitdiff |
| 2011-10-21 |
jprocter | extend alignPanel api with OOMHandler call to raise... |
tree | commitdiff |
| 2011-10-21 |
jprocter | remove unnecessary import |
tree | commitdiff |
| 2011-10-21 |
jprocter | Introduced new AlignCalcWorker/manager interface. |
tree | commitdiff |
| 2011-10-21 |
jprocter | Merge branch 'Release_2_7_Branch_hotfix_JAL-962' into... |
tree | commitdiff |
| 2011-10-21 |
jprocter | (JAL-965) new api methods to allow features to be loade... |
tree | commitdiff |
| 2011-10-21 |
jprocter | (JAL-962) rejig parameter processing order so groups... |
tree | commitdiff |
| 2011-10-21 |
jprocter | (JAL-962) allow group visibility to be specified before... |
tree | commitdiff |
| 2011-10-18 |
jprocter | backout parts of the interface from another development... |
tree | commitdiff |
| 2011-10-18 |
jprocter | (Jalview 3) refactored Graphics2D annotation rendering... |
tree | commitdiff |
| 2011-10-17 |
jprocter | (ahem) new renderer package containing api and renderin... |
tree | commitdiff |
| 2011-10-14 |
jprocter | (JAL-958) - normalised sequence logo for applet |
tree | commitdiff |
| 2011-10-11 |
jprocter | normalised logo rendering (JAL-958) |
tree | commitdiff |
| 2011-10-10 |
jprocter | (JAL-957) change splash screen and about to HTML text... |
tree | commitdiff |
| 2011-10-10 |
jprocter | update author list in license for (JAL-826) |
tree | commitdiff |
| 2011-10-07 |
jprocter | merge Jan and Lauren's RNA GUI changes into develop... |
tree | commitdiff |
| 2011-10-04 |
jprocter | Merge remote-tracking branch 'remotes/origin/2_5_1_rna_... |
tree | commitdiff |
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git://source.jalview.org / jalview.git / history