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additional instructions and use of -jar for launching
[jalview.git] / src /
2009-11-09 jproctermore spin on GA prompt tree | commitdiff
2009-11-09 jprocteruser friendly GA and privacy statement tree | commitdiff
2009-11-03 jprocterpasted file contents should never be added to the recen... tree | commitdiff
2009-11-02 jproctergracefully cope with non-standard nucleotide or amino... tree | commitdiff
2009-10-27 jprocterfix null pointer exception in redraw for short sequence... tree | commitdiff
2009-10-13 jprocterprompt user to enable usage stats tree | commitdiff
2009-10-13 jprocteradded preferences for usage stats, questionnaire check... tree | commitdiff
2009-10-13 jprocterdocumented privacy settings, fixed potential unhandled... tree | commitdiff
2009-10-13 jprocterenact on a boolean configuration option, prompting... tree | commitdiff
2009-10-12 jprocterensure id string doesn't get set to the empty string... tree | commitdiff
2009-10-12 jprocterensure id string doesn't get set to the empty string tree | commitdiff
2009-10-05 jprocterimmediately show memory usage tree | commitdiff
2009-08-03 jprocterfix feature creation for selected region beyond end... tree | commitdiff
2009-06-10 jproctercom.boxysystems.jgogleanalytics is now an optional... tree | commitdiff
2009-06-10 jprocterhelp message formatting tree | commitdiff
2009-06-02 jprocterapplied 2009 GPL license tree | commitdiff
2009-06-02 jprocterupgrade vamsas client to 0.1 (selections) tree | commitdiff
2009-06-02 jprocterGoogle Analytics tracking backport tree | commitdiff
2009-06-02 jprocternew jalview paper tree | commitdiff
2009-04-14 jprocterpatch to fix occasional arrayoutofbounds exception... tree | commitdiff
2009-04-07 jprocterfix to ensure multiple accessions can be fetched for... tree | commitdiff
2008-11-04 jprocterfix for recovery of dna/protein sequence mappings in... tree | commitdiff
2008-11-04 jprocterbugfix db ref retrieve routine so it removes dead query... tree | commitdiff
2008-11-04 jprocterimplemented embl validation properly tree | commitdiff
2008-11-04 jprocterapplication specific validIOformat method tree | commitdiff
2008-11-04 jprocterbugfix for transfer of user defined colourscheme from... tree | commitdiff
2008-11-04 jprocterapplication specific validIOformat method tree | commitdiff
2008-09-24 jprocterfixed sequence associated annotation reading bug where... tree | commitdiff
2008-09-16 jprocterjava 1.1 compatibility tree | commitdiff
2008-09-16 jprocterfix exception raised when JNet concise files with no... tree | commitdiff
2008-09-04 jprocterensure all URL links on the features under the residue... Release_2_4_0 tree | commitdiff
2008-09-04 jprocterquickfix for applet when opening relative URLs from... tree | commitdiff
2008-08-29 jprocterlicencing and format applied (eclipse) tree | commitdiff
2008-08-29 jproctertodo OOM tree | commitdiff
2008-08-29 jprocteruse OOMwarning to warn user when out of Memory occurs tree | commitdiff
2008-08-29 jprocteralways output to stderr for out of memory - (no depende... tree | commitdiff
2008-08-29 jprocterOOM warning dialog tree | commitdiff
2008-08-29 jprocterpass OutOfMemory errors upstream from EBI fetch client tree | commitdiff
2008-08-29 jproctersensibly sized example for PFAM source tree | commitdiff
2008-08-28 jprocteradded d martin to authors and fixed faq/discuss message tree | commitdiff
2008-08-28 jprocterbugfix for Jmol and new classloader reading capability tree | commitdiff
2008-08-28 jprocterauthor list and jalview discuss mailing list update... tree | commitdiff
2008-08-28 jprocterbugfix for applet examples with 1gaq where new classloa... tree | commitdiff
2008-08-28 jprocterThrow exception for unknown protocols in case of carbon... tree | commitdiff
2008-08-27 jprocterapplied copyright 2008 tree | commitdiff
2008-08-26 jprocterupdate Jpred3 service referenec tree | commitdiff
2008-08-26 jprocterallow '|' to be entered in URL text box and added regex... tree | commitdiff
2008-08-26 jprocterset title of viewer frame after file has been loaded... tree | commitdiff
2008-08-26 jprocterfuture bug fix todo tree | commitdiff
2008-08-26 jprocternew thread for initting of DBRefFetcher with latest... tree | commitdiff
2008-08-26 jprocteruses shared singleton from jalview.gui.SequenceFetcher... tree | commitdiff
2008-08-26 jprocteradded singleton access method to retrieve the latest... tree | commitdiff
2008-08-26 jprocterbugfix todo for the 'edit sequence' command tree | commitdiff
2008-08-26 jproctertooltip for fetch db refs and more generic regex for... tree | commitdiff
2008-08-26 jprocterpdb xrefs added as dbrefs and as PDB file links tree | commitdiff
2008-08-26 jprocterensure successive matches to a regex have distinct... tree | commitdiff
2008-08-20 jprocterUse 0f rather than NaN to specify non-valued annotation... tree | commitdiff
2008-08-20 jproctertooltip displays formatted annotation row description... tree | commitdiff
2008-08-19 jprocterbeginning of fix for embl/cds/highlighting IO in https... tree | commitdiff
2008-08-19 jprocterfix for arrayoutofbounds bug when secondary structure... tree | commitdiff
2008-08-19 jprocterbetter check for molecule type when identifying interna... tree | commitdiff
2008-08-19 jprocterregex links for launching URL from single click on... tree | commitdiff
2008-08-15 jprocterupdate text and version checker tree | commitdiff
2008-08-15 jprocterdialog size on macs tree | commitdiff
2008-08-15 jproctercheck for crossreferences every time the menus are... tree | commitdiff
2008-08-15 jproctercatch invalid URL link exception properly tree | commitdiff
2008-08-15 jprocterincrease height of dialog tree | commitdiff
2008-08-15 jprocterallow '|' in regex for URL links to be recovered from... tree | commitdiff
2008-08-15 jproctersafer copy constructor tree | commitdiff
2008-08-15 jprocterxrefs retrieved from Uniprot tree | commitdiff
2008-08-13 jproctercheck for null viewport on dataset recovery tree | commitdiff
2008-08-13 jprocterensure input data can be recovered for tree and PCA... tree | commitdiff
2008-08-13 jprocterdo not try to cancel jobs that cannot be cancelled tree | commitdiff
2008-08-12 jprocteradded nojmol parameter to disable check for jmol tree | commitdiff
2008-08-11 jprocterregular expression based URL link generation tree | commitdiff
2008-08-11 jprocterEnsure 'None' translates into no colour scheme applied tree | commitdiff
2008-08-06 jproctergeneration of additional URLs for DBRefs on a sequence... tree | commitdiff
2008-08-06 jprocterextra checks for datasetsequence for when getDbRefs... tree | commitdiff
2008-08-06 jproctergetDBRefs now always returns DBRefArray if it exists... tree | commitdiff
2008-08-05 jprocternew vamsas session does not open a dialog box tree | commitdiff
2008-08-05 jprocterensure das sequence sources are refreshed when das... tree | commitdiff
2008-08-05 jproctershowbutton default is true tree | commitdiff
2008-08-04 jprocterstackoverflow fix tree | commitdiff
2008-08-04 jprocterpfam seed and full alignment retrieval and nicer orderi... tree | commitdiff
2008-08-04 jprocteradded 'showbutton' applet parameter tree | commitdiff
2008-08-01 jprocternew SequenceFetcher gui and visual delay indication... tree | commitdiff
2008-08-01 jprocterupdated jalview version of dasobert 1.53e client and... tree | commitdiff
2008-08-01 jproctertodo tree | commitdiff
2008-08-01 jprocterinterface for windows that display progress bars tree | commitdiff
2008-07-31 jprocteruse canonical DbSource name in GUI box, and ensure... tree | commitdiff
2008-07-31 jprocterrefactored method for registering instance of a dbSourc... tree | commitdiff
2008-07-31 jprocterquick fix for the new uniprot name schema - description... tree | commitdiff
2008-07-31 jprocteradded specific retrieval arguments to SequneceFetcher... tree | commitdiff
2008-07-18 jprocterresolve 1:many mappings for sequence associated annotat... tree | commitdiff
2008-07-18 jprocterresolve 1:many mappings from feature sequence ID to... tree | commitdiff
2008-07-18 jprocterallow findSeq to begin *after* a given sequence in... tree | commitdiff
2008-07-18 jprocterSequence label colour stored for each sequence group tree | commitdiff
2008-07-18 jproctercomment tree | commitdiff
2008-07-18 jprocterannotation file format updated to take idColour and... tree | commitdiff
2008-07-18 jprocterSequence label colour stored for each sequence group tree | commitdiff
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