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Merge branch 'bug/JAL-1558' into Release_2_8_2_Branch_i18n
[jalview.git] / src /
2014-10-09 Jim Procterpatch fixes JAL-1558 tree | commitdiff
2014-10-07 Jim ProcterJAL-1557 partial implementation - need to think about... tree | commitdiff
2014-10-07 Jim Procterpatch for JAL-1151 - select whole sequence when double... tree | commitdiff
2014-10-07 Jim ProcterJAL-1421 remove Vector and pass a list tree | commitdiff
2014-10-07 Jim ProcterJAL-1151 source tidy tree | commitdiff
2014-10-06 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-429_phylip... tree | commitdiff
2014-10-06 Jim ProcterJAL-1500 JAL-1265 patch to parse PDB database refs... tree | commitdiff
2014-10-06 Jim ProcterJAL-654 remove any annotation rows for chain specific... tree | commitdiff
2014-10-06 Jim ProcterJAL-654 JAL-1264 sequence associated annotation is... tree | commitdiff
2014-10-06 Jim ProcterJAL-1115 TODO remove use of java.util.Vector tree | commitdiff
2014-10-06 Jim ProcterJAL-654 javadoc createDatasetSequence and transferAnnot... tree | commitdiff
2014-10-06 Jim ProcterJAL-654_dssp formatting and javadoc tree | commitdiff
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support tree | commitdiff
2014-10-03 Jim ProcterJAL-1355 removed all top level html tags from message... tree | commitdiff
2014-10-03 Jim ProcterMerge branch 'Release_2_8_2_Branch' into Release_2_8_2_... tree | commitdiff
2014-09-27 darolmarJAL-1355 tree | commitdiff
2014-09-26 darolmarJAL-1355 tree | commitdiff
2014-09-23 darolmarJAL-1355 tree | commitdiff
2014-09-19 darolmarJAL-1355 tree | commitdiff
2014-09-19 darolmarJAL-1355 tree | commitdiff
2014-09-18 gmungocMerge branch 'JAL-1360_Branch' into Release_2_8_2_Branch tree | commitdiff
2014-09-18 gmungocJAL-1360 Javadoc, Vector replaced with ArrayList, code... tree | commitdiff
2014-09-18 gmungocJAL-1360 Javadoc/JUnit tree | commitdiff
2014-09-18 gmungocJAL-1360 refactored utility method to ColorUtils class tree | commitdiff
2014-09-17 gmungocCorrect colour for text when colour set tree | commitdiff
2014-09-17 gmungocJAL-1360 refactored for consistent lighter/darker for tree | commitdiff
2014-09-17 gmungocJAL-1360 workaround for user defined colours display... tree | commitdiff
2014-09-12 j.procter@dundee... JAL-1486 JAL-1543 pushed alignment viewport->view-... tree | commitdiff
2014-09-12 j.procter@dundee... formatting and organise imports tree | commitdiff
2014-09-12 j.procter@dundee... JAL-1486 fix: pass selected region to jalview.io via... tree | commitdiff
2014-09-12 j.procter@dundee... JAL-1199 add stockholm output to list of AppletFormatAd... tree | commitdiff
2014-09-12 j.procter@dundee... JAL-1486 JAL-535 refactor code for trimming alignment... tree | commitdiff
2014-09-12 j.procter@dundee... JAL-535 tidy interface definition and documentation tree | commitdiff
2014-07-22 j.procter@dundee... JAL-1333 fix imports tree | commitdiff
2014-07-22 j.procter@dundee... JAL-1333 JAL-1533 todo to get Chimera superposing prope... tree | commitdiff
2014-07-22 j.procter@dundee... JAL-1333 more superposition debugging and deadlock... tree | commitdiff
2014-07-18 j.procter@dundee... JAL-1333 allow reuse of existing chimera for new or... tree | commitdiff
2014-07-18 j.procter@dundee... JAL-1333 more refinements - deadlocks still possible... tree | commitdiff
2014-07-18 j.procter@dundee... JAL-674 futzing with bugs tree | commitdiff
2014-07-18 j.procter@dundee... JAL-795 take colour from annotation if colour is present tree | commitdiff
2014-07-18 j.procter@dundee... ensure the dataset is instantiated before materialising... tree | commitdiff
2014-07-18 j.procter@dundee... JAL-1379 new look JPred results tree | commitdiff
2014-07-18 j.procter@dundee... JAL-1520 switch between Protein and non-canonical RNA... tree | commitdiff
2014-07-08 j.procter@dundee... JAL-1333 allow reuse of existing viewers (of a specifie... tree | commitdiff
2014-07-08 j.procter@dundee... JAL-1333 more efficient color statement tree | commitdiff
2014-07-04 j.procter@dundee... JAL-1333 more abstraction and refactoring and working... tree | commitdiff
2014-07-03 j.procter@dundee... Merge branch 'Release_2_8_2_Branch' into features/JAL... tree | commitdiff
2014-07-03 j.procter@dundee... Merge branch 'hotfix/JAL-1530' into Release_2_8_2_Branch tree | commitdiff
2014-07-03 Jim Procterfixes JAL-1530 tree | commitdiff
2014-07-02 Jim Procterrevalidate appears to have gone away ?? (java 1.7 upgra... tree | commitdiff
2014-07-02 Jim Procterformatting tree | commitdiff
2014-07-02 Jim ProcterJAL-1333 JAL-1527 refactors to create core structure... tree | commitdiff
2014-07-02 Jim Procter JAL-1333 Chimera specific code extracted from the... tree | commitdiff
2014-06-23 Jim ProcterJAL-1526 simple function to write a snapshot of the... tree | commitdiff
2014-06-12 Jim ProcterMerge branch 'hotfix/JAL-1524' into Release_2_8_2_Branch tree | commitdiff
2014-06-12 Jim ProcterJAL-1524 fix tree | commitdiff
2014-06-10 Jim ProcterJAL-1379 a JPred v3.0.1 client via JABA 2.1 tree | commitdiff
2014-06-10 Jim ProcterJAL-1379 allow services with an MSA interface to create... tree | commitdiff
2014-06-10 Jim Proctertidy source tree | commitdiff
2014-06-10 Jim ProcterJAL-1379 refactor Jws2 service client so dynamic servic... tree | commitdiff
2014-06-06 Jim ProcterJAL-1520 fix unicode translation errors. tree | commitdiff
2014-06-06 Jim ProcterJAL-1520 fix unicode translation errors. tree | commitdiff
2014-06-06 Jim ProcterJAL-1519 make the splash screen larger/more readable tree | commitdiff
2014-06-06 Jim ProcterJAL-1519 - tidy build properties management code tree | commitdiff
2014-06-06 Jim ProcterJAL-1519 fix author update issue (doh) tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-06-04 Jim ProcterJAL-952 fixed unresolved conflict breaking build tree | commitdiff
2014-06-04 Jim ProcterJAL-952 fixed unresolved conflict breaking build tree | commitdiff
2014-06-04 Jim ProcterJAL-1355 key typo tree | commitdiff
2014-06-03 Jim ProcterJAL-690 jvp rather than jar for save/restore state... tree | commitdiff
2014-06-03 Jim ProcterJAL-690 JAL-1503 update file types/extensions in Jalvie... tree | commitdiff
2014-06-03 Jim ProcterJAL-1473 exclude score models not compatible with PCA... tree | commitdiff
2014-06-03 Jim ProcterJAL-690 add .jvp as default jalview project filetype tree | commitdiff
2014-06-03 Jim ProcterJAL-1512 comment out for 2.8.1 release tree | commitdiff
2014-06-03 Jim ProcterJAL-1512 fix calculation once again and include score... tree | commitdiff
2014-06-03 Jim ProcterJAL-1473 make it easier to generate HTML documentation... tree | commitdiff
2014-06-02 Jim ProcterJAL-1512 rejig buggy conservation-basesd score matrix... tree | commitdiff
2014-05-28 Jim ProcterJAL-1507 bugfix tree | commitdiff
2014-05-27 Jim ProcterJAL-1507 added loop to throw dummy javascript calls... tree | commitdiff
2014-05-27 Jim ProcterJAL-1402 conditional logic to ensure annotation & label... tree | commitdiff
2014-05-27 Jim ProcterJAL-1508 make default font size 11pt for embedded menus... tree | commitdiff
2014-05-23 Jim ProcterJAL-1445 extend functionality to select or toggle selec... tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-05-13 Jim ProcterMerge branch 'bugfix/JAL-1239' into develop tree | commitdiff
2014-05-13 Jim ProcterJAL-1239 cancelled flag should be checked and counted tree | commitdiff
2014-05-13 Jim ProcterJAL-1239 make doubly sure sub job status is set to... tree | commitdiff
2014-05-12 Jim ProcterMerge branch 'JAL-1397' into develop tree | commitdiff
2014-05-12 Jim ProcterJAL-1397 catch other random version strings tree | commitdiff
2014-05-12 Jim Procterpatch for regression introduced JAL-1397 tree | commitdiff
2014-05-02 Jim ProcterMerge branch 'JAL-1397' into develop tree | commitdiff
2014-05-02 Jim ProcterJAL-1397 JAL-1066 JAL-1233 refactored annotation colour... tree | commitdiff
2014-05-02 Jim ProcterJAL-1369 JAL-1397 version check to support correct... tree | commitdiff
2014-05-02 Jim Procterformatting tree | commitdiff
2014-05-02 Jim ProcterJAL-1233 JAL-1066 fix for JAL-1397 test: allow per... tree | commitdiff
2014-05-01 Jim Procterremove todo tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 formatting and squash NPEs tree | commitdiff
2014-05-01 Jim ProcterJAL-1092 TODO - allow Jalview/JalviewLite to generate... tree | commitdiff
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