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JAL-1712 fixes/tests for Castor binding and 'show flanking regions'
[jalview.git] / src /
2015-05-14 gmungocJAL-1712 fixes/tests for Castor binding and 'show flank... bug/JAL-1712annotationsWithFlanking tree | commitdiff
2015-05-11 James ProcterJAL-1727 patch to make EBI mirror the default server Release_2_8_2b1_Branch tree | commitdiff
2015-05-07 Jim ProcterMerge remote-tracking branch 'origin/Release_2_8_2b1_Br... tree | commitdiff
2015-05-07 Jim ProcterJAL-1731 fix JPred4 citation in legacy client code tree | commitdiff
2015-05-07 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-05-07 Jim ProcterJAL-1601 migrated the JABAWS 2.1 jpred burial represent... tree | commitdiff
2015-04-21 tcofoegbuJAL-1694 bug fix for identifying/importing sequences... tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-12-09 gmungocJAL-1616 loading of datasets from XML patched Release_2_8_2_Branch tree | commitdiff
2014-12-08 Charles OfoegbuJAL-1613 hotfix for duplicated sequence after pairwise... tree | commitdiff
2014-12-05 gmungocJAL-1614 flag 'protein' removed tree | commitdiff
2014-12-03 Jim ProcterJAL-1517 disable desktop 'take snapshot' menu item... tree | commitdiff
2014-12-01 Jim ProcterJAL-1199 JAL-1569 incremental patch allow non-standard... tree | commitdiff
2014-12-01 Jim ProcterJAL-795 hack to ignore black colour in annotation element. tree | commitdiff
2014-12-01 Jim ProcterJAL-1601 ignore the JABA Jpred client in Jalview 2... tree | commitdiff
2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into... tree | commitdiff
2014-11-28 gmungocJAL-1610 check reference annotations against alignment... tree | commitdiff
2014-11-28 Jim ProcterJAL-1522 output installation type to stdout tree | commitdiff
2014-11-28 Jim ProcterJAL-1522 remove build/deployment details imported from... tree | commitdiff
2014-11-28 Jim ProcterJAL-1517 formatting tree | commitdiff
2014-11-28 Jim ProcterJAL-1611 revise log level to reduce verbosity tree | commitdiff
2014-11-28 Jim ProcterJAL-1583 javadoc and fix constructor signature tree | commitdiff
2014-11-28 Jim ProcterJAL-1604 formatting tree | commitdiff
2014-11-28 Jim ProcterJAL-1604 revised wording and internationalised dialog tree | commitdiff
2014-11-28 Jim ProcterJAL-1583 back out original fix and simply check MSAWSTh... tree | commitdiff
2014-11-28 Jim ProcterJAL-1583 formatting tree | commitdiff
2014-11-28 Jim ProcterJAL-1583 new validInput flag set according to validity... tree | commitdiff
2014-11-28 Jim ProcterJAL-1583 refactored addInternalFrame to allow webservic... tree | commitdiff
2014-11-28 Jim ProcterJAL-1517 formatting/tidy tree | commitdiff
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_B... tree | commitdiff
2014-11-27 Jim ProcterJAL-674 add sequence associated annotation rows to... tree | commitdiff
2014-11-27 Jim ProcterJAL-1177 JAL-905 cannot recover sequences from dataset... tree | commitdiff
2014-11-27 Jim ProcterJAL-674 avoid writing \0 for chain code tree | commitdiff
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_B... tree | commitdiff
2014-11-27 Jim ProcterJAL-674 patch to fix bug with showing reference annotat... tree | commitdiff
2014-11-27 Jim ProcterJAL-674 formatting tree | commitdiff
2014-11-27 Jim ProcterJAL-674 unused variable tree | commitdiff
2014-11-27 gmungocJAL-1603 if Chimera selected in Preferences, warn if... tree | commitdiff
2014-11-27 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... tree | commitdiff
2014-11-27 Jim ProcterJAL-674 JAL-966 new method to retrieve all views tree | commitdiff
2014-11-27 Jim Procterorganise imports tree | commitdiff
2014-11-27 Jim ProcterJAL-966 promote getName to an api method tree | commitdiff
2014-11-27 Charles OfoegbuJAL-1604 Entire sequence submision for MSA job bugfix tree | commitdiff
2014-11-27 Charles OfoegbuMerge branch 'bug/JAL-1583_MSA_webservice_validation... tree | commitdiff
2014-11-27 Charles Ofoegbumodified regex for sequence validation tree | commitdiff
2014-11-27 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... tree | commitdiff
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-207_pairwise-alignment-context... tree | commitdiff
2014-11-26 Charles OfoegbuJAL-207 pairwise alignment sequence contexts propergati... tree | commitdiff
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-998_wrap-sequence-tooltip' into... tree | commitdiff
2014-11-26 Charles OfoegbuJAL-998 fixed empty tooltip bug when only one sequence... tree | commitdiff
2014-11-26 Jim ProcterJAL-674 make RNAML-extracted secondary structure lines... tree | commitdiff
2014-11-26 Jim ProcterJAL-1578 fix logic for showing score when no descriptio... tree | commitdiff
2014-11-26 Jim ProcterJAL-674 JAL-1578 commented code for displaying annotati... tree | commitdiff
2014-11-26 Jim ProcterJAL-674 friendly name for PDB file included in secondar... tree | commitdiff
2014-11-26 Jim ProcterJAL-674 employ the provided DNA/Protein matrix string... tree | commitdiff
2014-11-26 Jim ProcterJAL-674 disable addition of PDBRESNUM annotation line tree | commitdiff
2014-11-26 Jim ProcterJAL-674 nicer temperature factor labelling and include... tree | commitdiff
2014-11-26 gmungocJAL-1528 NullPointer check / more informative PDB fetch... tree | commitdiff
2014-11-25 Jim Procterfix for JAL-689 ensure fastpainting flag set only when... tree | commitdiff
2014-11-25 Jim Procterformatting tree | commitdiff
2014-11-25 Jim Procterpatch for JAL-1599 - annotation row constructed by... tree | commitdiff
2014-11-25 Charles Ofoegbumerge commit features/JAL-1469_svg-output-for-figure-export tree | commitdiff
2014-11-25 Charles OfoegbuJAL-1469 Added SVGOptions.java for lineart/text renderi... tree | commitdiff
2014-11-25 gmungocJFAL-1594 fix Undo bug; enum EditCommand.Action; basic... tree | commitdiff
2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_... tree | commitdiff
2014-11-24 Jim ProcterJAL-1593 refactor rna helix colours to static singleton... tree | commitdiff
2014-11-24 Jim ProcterJAL-1264 update annotation panel dimensions before... tree | commitdiff
2014-11-24 Jim ProcterJAL-1595 update annotation sort on opening of the ... tree | commitdiff
2014-11-24 Jim ProcterJAL-1595 annotation score is total number of rna helices tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 interactive editing of secondary structure... tree | commitdiff
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_... tree | commitdiff
2014-11-23 Jim Procteremploy test and secondary structure character for deter... tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 formatting tree | commitdiff
2014-11-23 Jim ProcterJAL-1593 allow per-sequence shading of RNA helix (store... tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 test for open/close RNA parenthesis character tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 formatting tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 consistent handling of sequence and alignment... tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 formatting tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 preserve input ordering for stockholm files... tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 remove stdout on parsing RNA tree | commitdiff
2014-11-23 Jim ProcterJAL-1152 avoid NPE on null alignment annotation vector tree | commitdiff
2014-11-21 gmungocJAL-1528 found and readded Colour by Chain ('rainbow... tree | commitdiff
2014-11-21 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... tree | commitdiff
2014-11-21 Jim ProcterJAL-674 add RNA sequence associated annotation to align... tree | commitdiff
2014-11-21 Jim ProcterJAL-1569 formatting tree | commitdiff
2014-11-21 Jim ProcterJAL-1140 sensible name for seuqences in RNAML files... tree | commitdiff
2014-11-21 Jim ProcterJAL-1489 change initial value to distinguish non-rna... tree | commitdiff
2014-11-21 Jim ProcterJAL-1592 JAL-1489 avoid invalid RNA structure and disti... tree | commitdiff
2014-11-20 Jim ProcterJAL-1569 rna pair code in secondary structure character... tree | commitdiff
2014-11-20 Jim ProcterJAL-674 JAL-1569 mark RNA helix number in the value... tree | commitdiff
2014-11-20 Jim ProcterJAL-1569 remove log output during RNA secondary structu... tree | commitdiff
2014-11-19 Charles OfoegbuJAL-1583 MSA webservice validation tree | commitdiff
2014-11-19 gmungocJAL-1342 new command-line parameter -jabaws <URL> tree | commitdiff
2014-11-19 Charles Ofoegbumerge commit tree | commitdiff
2014-11-19 Charles OfoegbuJAL-207 pairwise alignment context patch tree | commitdiff
2014-11-19 Charles OfoegbuJAL-1522 included installation details in log output tree | commitdiff
2014-11-18 Charles OfoegbuMerge branch 'bug/JAL-998_wrap-sequence-tooltip' into... tree | commitdiff
2014-11-18 Charles OfoegbuJAL-998 tooltip wrapping tree | commitdiff
2014-11-18 gmungocJAL-1349 rebuild Web Service menu after add/delete... tree | commitdiff
2014-11-18 gmungocJAL-1582 removing finalize() as may have unexpected... tree | commitdiff
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