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Merge branch 'releases/Release_2_11_1_Branch' into merge/JAL-3628+JAL-3608+JAL-3609...
[jalview.git] / src /
2020-07-30 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into... bug/JAL-3702_Drag_and_drop_miscalculation_in_linux_HiDPI tree | commitdiff
2020-07-30 Ben SoaresJAL-3633 last minute refinement so password box doesn... tree | commitdiff
2020-07-30 Ben SoaresJAL-3633 Apply (proxy) button enabled when needed tree | commitdiff
2020-07-29 Ben SoaresJAL-3633 Small changes to allow future fitting with... tree | commitdiff
2020-07-29 Ben SoaresJAL-3275 JAL-3633: JAL-3275 Turned Preferences into... tree | commitdiff
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe... tree | commitdiff
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their... tree | commitdiff
2020-07-27 Ben SoaresJAL-3633 Set proxy preferences before web calls in... tree | commitdiff
2020-07-27 gmungocJAL-2656 JAL-3615 check response headers to test for... tree | commitdiff
2020-07-27 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam tree | commitdiff
2020-07-27 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into relea... tree | commitdiff
2020-07-27 gmungocJAL-3621 corrected sequence feature sort and test tree | commitdiff
2020-07-27 gmungocJAL-3621 update to intervalstore v1.1 tree | commitdiff
2020-07-27 Jim ProcterJAL-3697 show total number of features not shown tree | commitdiff
2020-07-27 Jim ProcterJAL-3696 log the error message from the exception to... tree | commitdiff
2020-07-25 Ben SoaresJAL-3633 Memory only proxy auth password storage. Open... tree | commitdiff
2020-07-22 Ben SoaresJAL-3633 Added Proxy Authentication credentials in... tree | commitdiff
2020-07-21 Ben SoaresJAL-3633 Added Preferences for Proxy Authentication... tree | commitdiff
2020-07-21 Ben SoaresJAL-3633 label.proxy_server -> label.proxy_servers tree | commitdiff
2020-07-12 Ben SoaresJAL-3633 Remember system set proxy properties. Add... tree | commitdiff
2020-07-10 Ben SoaresMerge branch 'merge/JAL-3628+JAL-3608+JAL-3609+JAL... tree | commitdiff
2020-07-08 Ben SoaresJAL-3633 ensure check both or https:// for urls tree | commitdiff
2020-07-08 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into... tree | commitdiff
2020-07-08 Ben SoaresMerge branch 'task/JAL-3609_HiDPI_support_in_java'... tree | commitdiff
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 tree | commitdiff
2020-07-07 Ben SoaresJAL-3608 ex stacktraces now go to Cache.log.debug tree | commitdiff
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error tree | commitdiff
2020-07-07 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi... tree | commitdiff
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error tree | commitdiff
2020-07-07 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error... tree | commitdiff
2020-07-06 Ben SoaresJAL-3676 improvement for visual selection of console... tree | commitdiff
2020-07-06 Ben SoaresJAL-3628 improvement for visual selection of console... tree | commitdiff
2020-07-06 Ben SoaresJAL-3628 Fix for slightly incorrect boolean usage to... tree | commitdiff
2020-07-06 Ben SoaresJAL-3628 Even more Cache.log.debug statements tree | commitdiff
2020-07-04 Jim ProcterMerge branch 'merge/JAL-3609_and_JAL-3608' into release... tree | commitdiff
2020-07-04 Jim ProcterJAL-3638 don’t move cursor to next gap after moving... tree | commitdiff
2020-07-04 Jim ProcterJAL-3680 check whether a sequence selection exists... tree | commitdiff
2020-07-04 Jim ProcterJAL-3638 shift+arrow keys in cursor mode jumps cursor... tree | commitdiff
2020-07-04 Ben SoaresJAL-3628 More Cache.log.debug statements tree | commitdiff
2020-07-02 Ben SoaresJAL-3676 code review -- added non-listed Level into... tree | commitdiff
2020-07-01 Ben SoaresMerge branch 'task/JAL-3608_property_set_laf_and_tests_... tree | commitdiff
2020-06-30 Ben SoaresJAL-3676 Added Log Level ComboBox and Copy to Clipboard... tree | commitdiff
2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all tree | commitdiff
2020-06-24 Ben SoaresJAL-3667 Fixed single backupfile error deleting the... tree | commitdiff
2020-06-21 Ben SoaresJAL-3609 Report when scale setting used. tree | commitdiff
2020-06-21 Ben SoaresJAL-3609 New auto-scale 'formula' for linux HiDPI.... tree | commitdiff
2020-06-16 Ben SoaresJAL-3608 non-JS cherry-pick tree | commitdiff
2020-06-16 Ben SoaresJAL-3608 formatting save only tree | commitdiff
2020-06-16 Ben SoaresJAL-3608 formatting save only tree | commitdiff
2020-06-15 Ben SoaresJAL-3628 Changed other calls to renameTo to use BackupF... tree | commitdiff
2020-06-08 Ben SoaresJAL-3628 Changed all file1.renameTo(file2) calls to... tree | commitdiff
2020-05-22 soaresJAL-3609 corrected maxdimension to mindimension. Adjust... tree | commitdiff
2020-05-20 Ben SoaresJAL-3609 removed debugging prints tree | commitdiff
2020-05-19 Ben SoaresJAL-3609 changed property names to something more palat... tree | commitdiff
2020-05-19 Ben SoaresJAL-3609 system properties to force a scale, or automat... tree | commitdiff
2020-05-19 Ben SoaresJAL-3609 Added a -DforceHiDPISetting=true option mainly... tree | commitdiff
2020-05-18 gmungocJAL-3613 remove debug code committed in error tree | commitdiff
2020-05-15 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in... tree | commitdiff
2020-05-01 gmungocMerge branch 'bug/JAL-3613emblCDSTracking' into release... tree | commitdiff
2020-05-01 gmungocJAL-3613 check sequence overlap when matching search... tree | commitdiff
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... Release_2_11_1_0 tree | commitdiff
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files tree | commitdiff
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... tree | commitdiff
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3574filterByPOS' into documentati... tree | commitdiff
2020-04-21 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch tree | commitdiff
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3567virtualFeatureCoordinates... tree | commitdiff
2020-04-21 Jim ProcterJAL-367 code tidy tree | commitdiff
2020-04-21 Jim ProcterJAL-3567 translated rather than imputed peptide tree | commitdiff
2020-04-17 gmungocJAL-3567 unit tests for linked feature tooltips tree | commitdiff
2020-04-16 gmungocJAL-3567 adjust layout of linked feature report, unit... tree | commitdiff
2020-04-16 gmungocJAL-3567 added 'imputed by Jalview' to protein conseque... tree | commitdiff
2020-04-16 gmungocJAL-3567 report mapped location for virtual features... tree | commitdiff
2020-04-14 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch tree | commitdiff
2020-04-14 Jim ProcterMerge branch 'bug/JAL-3529_uniprotidsinstockholm' into... tree | commitdiff
2020-04-14 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch tree | commitdiff
2020-04-13 gmungocJAL-3574 Matcher with integer/long value pattern (e... tree | commitdiff
2020-04-12 gmungocJAL-3596 change redacted tree | commitdiff
2020-04-12 gmungocJAL-3596 don't draw text over features if Show Text... tree | commitdiff
2020-04-06 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch tree | commitdiff
2020-04-06 Jim ProcterJAL-3407 redact java 8 incompatible type inference tree | commitdiff
2020-04-06 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch tree | commitdiff
2020-04-06 gmungocJAL-3581 no hidden sequence marker if hidden markers... tree | commitdiff
2020-04-06 gmungocJAL-3579 no Feature Editor if features not shown tree | commitdiff
2020-03-31 Jim ProcterMerge branch 'documentation/Release_2_11_1_Branch'... tree | commitdiff
2020-03-30 Jim ProcterJAL-3407 JAL-3130 back out java 9+ syntax that breaks... tree | commitdiff
2020-03-20 Jim ProcterJAL-3549 javadoc tree | commitdiff
2020-03-19 gmungocJAL-3305 don't propagate an empty SelectionGroup to... tree | commitdiff
2020-03-16 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2020-03-09 gmungocJAL-3528 unit tests added for failed lookup, Javadoc tree | commitdiff
2020-03-09 gmungocJAL-3549 JAL-3305 no Sort By Score / Density if no... tree | commitdiff
2020-03-09 gmungocJAL-3412 update layout whenever desired id width changes testbuild/JAL-3412_getIdWidth_test tree | commitdiff
2020-03-06 gmungocJAL-3187 unit test for findComplementFeaturesAtResidue tree | commitdiff
2020-03-06 gmungocMerge branch 'feature/JAL-3468featureDescriptionEllipsi... tree | commitdiff
2020-03-06 gmungocJAL-3468 i18n and additional unit tests feature/JAL-3468featureDescriptionEllipsis tree | commitdiff
2020-03-05 gmungocMerge branch 'releases/Release_2_11_1_Branch' of https... tree | commitdiff
2020-03-05 gmungocJAL-3303 suppressed for 2.11.1 tree | commitdiff
2020-03-05 Jim ProcterMerge branch 'improvement/JAL-3543_dont_report_null_ver... tree | commitdiff
2020-03-04 Ben SoaresJAL-3468 small tidy tree | commitdiff
2020-03-04 Ben SoaresJAL-3468 improvement to feature description truncation... tree | commitdiff
2020-03-04 Ben SoaresJAL-3468 Obsessively fixed self-closing <br/> tags tree | commitdiff
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