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Merge branch 'improvement/JAL-1350_makegroups_markedcolumns' into merge/JAL-845_JAL...
[jalview.git] / src /
2015-02-12 Jim ProcterMerge branch 'improvement/JAL-1350_makegroups_markedcol... tree | commitdiff
2015-02-12 Jim ProcterJAL-1350 pass the columnselection rather then selected... tree | commitdiff
2015-02-12 Jim ProcterJAL-1350 cloned method and tested equivalence for using... tree | commitdiff
2015-02-12 Jim ProcterJAL-1115 switch to lists in SequenceGroup tree | commitdiff
2015-02-12 Jim ProcterJAL-1115 typecast tree | commitdiff
2015-02-12 Jim Procterjavadoc tree | commitdiff
2015-02-12 Jim ProcterJAL-1115 List rather than vector for sequence groups... tree | commitdiff
2015-02-12 gmungocMerge remote-tracking branch 'origin/merge/JAL-845_JAL... tree | commitdiff
2015-02-11 gmungocJAL-845 handling eXpand/Gather split frame views tree | commitdiff
2015-02-11 Jim ProcterJAL-1655 JAL-845 special support to set column width... tree | commitdiff
2015-02-11 Jim ProcterJAL-845 avoid OOBException when method is called with... tree | commitdiff
2015-02-11 Jim ProcterJAL-969 use AlignViewportI interface instance where... tree | commitdiff
2015-02-11 Jim ProcterJAL-1654 allow font to be specified without modifying... tree | commitdiff
2015-02-10 Jim Procternote about preserving/reinstating custom grid geometry... tree | commitdiff
2015-02-10 Jim ProcterJAL-1640 make font-size changes modify grid size again tree | commitdiff
2015-02-10 Jim ProcterJAL-845 - portability patch - workaround for lastToken... tree | commitdiff
2015-02-10 Jim Procteradded comment to @gmungoc todo about referencing PDB... tree | commitdiff
2015-02-10 Jim ProcterJAL-845 @mungoc TODO comments - addAlignment needs... tree | commitdiff
2015-02-10 Jim ProcterJAL-1382 slightly more efficient detection of non-gap... tree | commitdiff
2015-02-10 Jim ProcterJAL-1382 @mungo TODO done: use StringUtils for delete... tree | commitdiff
2015-02-10 Jim ProcterJAL-966 @mungo TODO complete: List rather than bare... tree | commitdiff
2015-02-09 Jim ProcterMerge branch 'features/JAL-845splitPaneMergeDevelop... tree | commitdiff
2015-02-09 Jim ProcterMerge branch 'develop' into JAL-1640_stylesettings tree | commitdiff
2015-02-09 gmungocMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2015-02-06 gmungocJAL-845 further code/tests/refactoring tree | commitdiff
2015-02-06 Jim ProcterJAL-1640 new menu allowing view settings to be transfer... tree | commitdiff
2015-02-06 Jim ProcterJAL-1640 Desktop.getAlignmentPanel and Desktop.getViewp... tree | commitdiff
2015-02-06 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-02-06 Jim ProcterJAL-1640 more properties moved to style bean and ration... tree | commitdiff
2015-02-06 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-02-06 Jim ProcterJAL-1640 JAL-966 is for boolean getter on AlignViewportI tree | commitdiff
2015-02-05 Charles Ofoegbumerge commit tree | commitdiff
2015-02-04 Charles OfoegbuJAL-1643 modified jalviewFileChooser to retain default... tree | commitdiff
2015-02-04 Charles OfoegbuJAL-1643 Modified JalviewFileChooser to have a more... tree | commitdiff
2015-02-03 gmungocJAL-845 column mapping speed-up tree | commitdiff
2015-02-03 gmungocJAL-845 SplitFrame key bindings delegation to AlignFram... tree | commitdiff
2015-02-03 gmungocJAL-845 preparation for awareness of AlignFrame in... tree | commitdiff
2015-02-03 gmungocJAL-845 redundant 'map to self' removed from buildSearc... tree | commitdiff
2015-02-03 gmungocJAL-845 code/refactoring/tests related to linking DNA... tree | commitdiff
2015-02-02 Charles OfoegbuMerge branch 'bug/JAL-1644_Finder-logic-improvement... tree | commitdiff
2015-02-02 Charles OfoegbuJAL-1644 added null check for sequence description... tree | commitdiff
2015-02-02 Jim ProcterJAL-1640 setStyle method and associated tests (required... tree | commitdiff
2015-02-02 Jim ProcterJAL-966 allow access to viewport interface from alignPanel tree | commitdiff
2015-02-02 Jim ProcterJAL-1640 getters and setters for viewStyleI - note... tree | commitdiff
2015-02-02 Jim ProcterJAL-1640 copy constructor test and implementation by... tree | commitdiff
2015-02-02 Jim ProcterJAL-715 tweaks for SRBS description string parsing tree | commitdiff
2015-02-02 Jim ProcterJAL-1161 JAL-1606 note about awt/swing dependency in... tree | commitdiff
2015-02-02 Charles OfoegbuMerge commit tree | commitdiff
2015-02-02 Charles OfoegbuJAL-1644 revised Finder's implementation to use a flag... tree | commitdiff
2015-02-02 Jim ProcterJAL-1640 JAL-1551 formatting/imports/remove dead code tree | commitdiff
2015-02-02 Jim ProcterJAL-1640 updates to use get/setter on viewportI: effici... tree | commitdiff
2015-02-02 Jim ProcterJAL-1640 separated style operations into a new ViewStyl... tree | commitdiff
2015-02-02 Charles OfoegbuMerge branch 'bug/JAL-1644_Finder-logic-improvement... tree | commitdiff
2015-02-02 Charles OfoegbuJAL-1644 improvment of finder logic to include the... tree | commitdiff
2015-01-30 gmungocJAL-845 linked protein/dna 'slave' further PoC function... features/JAL-845linkedProteinDnaEditing tree | commitdiff
2015-01-28 Jim ProcterJAL-1565 automatically mark query sequence as the seque... tree | commitdiff
2015-01-28 Jim Procter JAL-674 patch to make Mapping.compareTransferredToR... tree | commitdiff
2015-01-27 gmungocJAL-1588 new class renamed tree | commitdiff
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'... tree | commitdiff
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s) tree | commitdiff
2015-01-23 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... tree | commitdiff
2015-01-23 gmungocJAL-1588 first working (?) restore of Chimera session... tree | commitdiff
2015-01-23 Charles OfoegbuJAL-1553 added help documentation and updated Annotatio... features/JAL-1553_improvement-select-column-by-annotation-row-query-interface tree | commitdiff
2015-01-23 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-01-23 Jim ProcterJAL-1286 don't print an exception if a non-gzip stream... tree | commitdiff
2015-01-23 Jim ProcterJAL-1551 crlf changes tree | commitdiff
2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method tree | commitdiff
2015-01-23 Jim ProcterJAL-969 drop the hiddenColumns flag in favour of checki... tree | commitdiff
2015-01-23 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen... tree | commitdiff
2015-01-23 gmungocJAL-1619 javadoc/tidy tree | commitdiff
2015-01-23 gmungocJAL-1635 show warning if less than 3 columns selected... tree | commitdiff
2015-01-23 Jim ProcterJAL-1628 tweak signature of core annotation printer... tree | commitdiff
2015-01-23 Jim ProcterJAL-1551 formatting/imports tree | commitdiff
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples... tree | commitdiff
2015-01-23 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... tree | commitdiff
2015-01-23 Charles OfoegbuJAL-1553 fixed null pointer exception thrown in SeqCanv... tree | commitdiff
2015-01-23 Jim ProcterJAL-1551 source code formatting tree | commitdiff
2015-01-23 Jim ProcterJAL-969 javadoc and mark interface overrides for clarity tree | commitdiff
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour... tree | commitdiff
2015-01-22 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... tree | commitdiff
2015-01-22 Charles OfoegbuJAL-1553 added applet support for the select-column... tree | commitdiff
2015-01-22 gmungocJAL-1619 refactoring / tests to support 'align linked... tree | commitdiff
2015-01-21 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen... tree | commitdiff
2015-01-20 Charles Ofoegbuclean up tree | commitdiff
2015-01-20 Charles Ofoegbuclean up tree | commitdiff
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... tree | commitdiff
2015-01-20 Charles OfoegbuFurther abstractions and clean up tree | commitdiff
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... tree | commitdiff
2015-01-20 Charles Ofoegbubasic house keeping tree | commitdiff
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... tree | commitdiff
2015-01-20 Charles OfoegbuJAL-1553 enhancement of column selection by annotation... tree | commitdiff
2015-01-19 gmungocJAL-1619 refactored cDNA translation; modified codon... tree | commitdiff
2015-01-19 gmungocJAL-1636 typed collections now in ResidueProperties tree | commitdiff
2015-01-19 gmungocJAL-1636 fix for mouseover of 'X' in translated protein tree | commitdiff
2015-01-18 Jim ProcterJAL-1372 i18n and tweaking set/unset representative... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 formatting tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 formatting and javadoc tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 method to hide insertions to current sequence... tree | commitdiff
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