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JAL-1236 TODO: fix up parser to cope with the currently defined custom header......
[jalview.git] / src /
2019-12-13 Jim ProcterJAL-1236 TODO: fix up parser to cope with the currently... patch/JAL-1236_customClustalHeader tree | commitdiff
2019-12-13 Jim ProcterJAL-1236 CLUSTAL_HEADER property to configure the heade... tree | commitdiff
2019-09-26 gmungocJAL-2481 remove code duplication left by merge tree | commitdiff
2019-09-26 gmungocJAL-3441 action double-click in Feature Type column... tree | commitdiff
2019-08-23 gmungocJAL-3141 correct cast of spinner value tree | commitdiff
2019-08-22 gmungocJAL-3187 case-insensitive codon variant calculation tree | commitdiff
2019-08-21 gmungocJAL-3187 minor code tidying, todo removal tree | commitdiff
2019-08-09 gmungocJAL-3187 removal of variant feature (non-virtual) trans... tree | commitdiff
2019-08-07 gmungocJAL-3187 (fudge) look in both alignments for stored... feature/JAL-3187linkedFeatures tree | commitdiff
2019-08-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures tree | commitdiff
2019-07-31 gmungocJAL-3389 add .py to restored Chimera session filename... tree | commitdiff
2019-07-31 gmungocMerge branch 'bug/JAL-3388structureChooserSorting'... tree | commitdiff
2019-07-30 gmungocJAL-3198 more efficient Sequence.getDisplayId() tree | commitdiff
2019-07-30 gmungocJAL-3388 correct class for column 0 Ref Sequence bug/JAL-3388structureChooserSorting tree | commitdiff
2019-07-29 gmungocJAL-3386 correct wrapped width calculation for headless... tree | commitdiff
2019-07-29 gmungocJAL-3377 more reused of SeqCanvas.computeWrappedGeometry tree | commitdiff
2019-07-29 gmungocJAL-3377 add seq-annotations gap to cheight not to... tree | commitdiff
2019-07-29 gmungocJAL-3377 Javadoc added for getWrappedHeight() tree | commitdiff
2019-07-29 gmungocJAL-3377 corrected wrapped widths height for IdCanvas tree | commitdiff
2019-07-29 gmungocJAL-3377 include seq-annotation spacing in getWrappedHe... tree | commitdiff
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into tree | commitdiff
2019-07-26 gmungocJAL-1793 only decode specific special characters in... tree | commitdiff
2019-07-26 gmungocJAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation tree | commitdiff
2019-07-26 gmungocJAL-3375 format validate VCF Integer and Float fields tree | commitdiff
2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data tree | commitdiff
2019-07-16 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures tree | commitdiff
2019-07-16 gmungocJAL-2987 tolerate null double values when formatting... tree | commitdiff
2019-07-10 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures tree | commitdiff
2019-07-08 gmungocJAL-3187 derived peptide variants tweaks and tests tree | commitdiff
2019-07-05 gmungocJAL-3187 initial refactoring towards peptide variant... tree | commitdiff
2019-07-05 gmungocJAL-1793 apply URL decoding when saving VCF attribute... tree | commitdiff
2019-07-02 Jim ProcterJAL-3111 JAL-3280 hide the version check preference... tree | commitdiff
2019-07-02 Jim ProcterMerge branch 'develop' into tasks/JAL-3311_removeVamsasMenu tree | commitdiff
2019-07-01 Ben SoaresJAL-3333 removed unused variable tree | commitdiff
2019-07-01 Ben SoaresJAL-3333 using floats for smoother weighting tree | commitdiff
2019-06-29 Ben SoaresJAL-3333 Sorry couldn't resist adding a bit of weightin... tree | commitdiff
2019-06-29 Ben SoaresJAL-3333 Title text now appears instantly. Altering... tree | commitdiff
2019-06-28 Ben SoaresMerge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceIn... tree | commitdiff
2019-06-28 Ben SoaresJAL-3333 changed RGB model. Tested in mojave and Windo... tree | commitdiff
2019-06-28 Jim ProcterMerge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceIn... tree | commitdiff
2019-06-28 Ben SoaresJAL-3333 Smooth rotation of image now too tree | commitdiff
2019-06-28 Ben SoaresJAL-3333 added height to rotating image preferred size tree | commitdiff
2019-06-28 Jim ProcterJAL-3330 apply Ensembl feature settings when showing... bug/JAL-3330_backpropagateEnsemblFeatureColours tree | commitdiff
2019-06-28 Ben SoaresJAL-3333 Replaced title text rendered in animated image... tree | commitdiff
2019-06-26 Jim ProcterJAL-3334 fix - always load full SO to resolve the seque... tree | commitdiff
2019-06-26 Jim ProcterJAL-3111 get rid of nasty tab characters tree | commitdiff
2019-06-26 Jim ProcterJAL-3332 test to check for duplicate db sources and... tree | commitdiff
2019-06-26 Jim ProcterJAL-3330 javadoc tree | commitdiff
2019-06-24 Jim ProcterJAL-3330 merge styles onto originating view after fetch... tree | commitdiff
2019-06-24 Jim ProcterJAL-3330 dbreffetcher: record any feature display model... tree | commitdiff
2019-06-24 Jim ProcterJAL-3330 merge styles onto originating views when show... tree | commitdiff
2019-06-24 Jim ProcterJAL-3330 mergeFeatureStyles - needs test coverage tree | commitdiff
2019-06-19 Ben SoaresMerge branch 'merge/JAL-3310_and_JAL-3300' into develop tree | commitdiff
2019-06-19 Ben SoaresJAL-3321 Last pieces of the getdown-launcher.jar upgrad... tree | commitdiff
2019-06-19 Jim ProcterMerge branch 'develop' into documentation/JAL-3111_rele... tree | commitdiff
2019-06-18 gmungocJAL-3313 don't double count mapped codons tree | commitdiff
2019-06-18 Jim ProcterMerge branch 'bug/JAL-2830_editManglesDatasetSequence... tree | commitdiff
2019-06-18 Ben SoaresMerge branch 'develop' into merge/JAL-3310_and_JAL... tree | commitdiff
2019-06-18 gmungocJAL-3187 javadoc tree | commitdiff
2019-06-18 Jim ProcterMerge branch 'bug/JAL-3286duplicatePdbQuery' into develop tree | commitdiff
2019-06-18 gmungocJAL-3304 option to export linked features also for... tree | commitdiff
2019-06-18 Ben SoaresJAL-3312 Fixed SHIFT-CMD/SHIFT-CTRL Key combinations... tree | commitdiff
2019-06-18 gmungocJAL-3304 option to export linked features in Jalview... tree | commitdiff
2019-06-18 gmungocJAL-3187 i18n show linked features checkboxes tree | commitdiff
2019-06-18 gmungocJAL-3305 mirror popup menu column selections in split... tree | commitdiff
2019-06-17 Ben SoaresJAL-3310 JAL-3300 two getdown fixes merged tree | commitdiff
2019-06-17 gmungocJAL-2792 JAL-3187 linked features (if shown) in Feature... tree | commitdiff
2019-06-17 gmungocJAL-3187 update alignAs code and unit tests for 'shared... tree | commitdiff
2019-06-17 gmungocJAL-3187 add sequence to feature details table (and... tree | commitdiff
2019-06-17 Jim ProcterJAL-3311 remove menus and documentation relating to... tasks/JAL-3311_removeVamsasMenu tree | commitdiff
2019-06-14 Ben SoaresJAL-3295 pre-merged code with JAL-3295 branch which... tree | commitdiff
2019-06-14 Ben SoaresJAL-3278 A system.out.println turned into a cache.log... tree | commitdiff
2019-06-14 Jim ProcterJAL-3111 report build type and commit in stdout from... tree | commitdiff
2019-06-14 Jim ProcterJAL-3299 JAL-3280 javadoc on BuildDetails bean tree | commitdiff
2019-06-14 gmungocJAL-3302 transfer visible 'linked' features to Chimera tree | commitdiff
2019-06-13 gmungocJAL-3303 ignore deletions when computing peptide variants tree | commitdiff
2019-06-13 Jim ProcterMerge branch 'bug/JAL-3295_CMD_select_not_working_in_se... tree | commitdiff
2019-06-13 gmungocJAL-3143 recognise lnc_RNA as transcript tree | commitdiff
2019-06-12 Ben SoaresJAL-3295 Fixed CMD-select of sequences in alignment... tree | commitdiff
2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures tree | commitdiff
2019-06-11 gmungocJAL-3143 also parse "phase" from JSON response if present tree | commitdiff
2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures tree | commitdiff
2019-06-11 gmungocJAL-3288 fixes for gain/lose focus tree | commitdiff
2019-06-11 gmungocJAL-3187 CDS has same dataset sequence as transcript tree | commitdiff
2019-06-07 gmungocJAL-3187 save and restore flags for show complement... tree | commitdiff
2019-06-07 gmungocJAL-3187 change fields to local variables tree | commitdiff
2019-06-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures tree | commitdiff
2019-06-07 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into... tree | commitdiff
2019-06-07 gmungocJAL-3187 Viewport schema attributes for showComplementF... tree | commitdiff
2019-06-07 gmungocJAL-3251 added optional attributes Sequence.biotype... tree | commitdiff
2019-06-07 gmungocJAL-2738 use GeneLocus extends DBRefEntry to hold chrom... tree | commitdiff
2019-06-06 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into... tree | commitdiff
2019-06-06 gmungocJAL-3187 deletions (of Castor code) after merge from... tree | commitdiff
2019-06-06 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-06-05 gmungocJAL-3288 override JInternalFrame.setSelected() to avoid... bug/JAL-3288splitFrameMenusJava11 tree | commitdiff
2019-06-04 gmungocJAL-2386 avoid duplicate pdbids in free text query bug/JAL-3286duplicatePdbQuery tree | commitdiff
2019-05-31 Ben SoaresJAL-3247 Adjusted Uninstall Old Jalview.app to just... tree | commitdiff
2019-05-29 gmungocJAL-2738 error logging if no ##reference found tree | commitdiff
2019-05-29 gmungocJAL-2738 accept .csi, default to GRCh37:homo_sapiens... tree | commitdiff
2019-05-28 Ben SoaresJAL-1988 Some TEST code accidentally left in now remove... tree | commitdiff
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