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JAL-3490 tests for skip hidden regions (and a bug fix)
[jalview.git] / test / jalview / io /
2019-12-11 gmungocJAL-3490 revised layout and search algorithm (more... tree | commitdiff
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into tree | commitdiff
2019-07-26 gmungocJAL-1793 only decode specific special characters in... tree | commitdiff
2019-07-26 gmungocJAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation tree | commitdiff
2019-07-26 gmungocJAL-3375 format validate VCF Integer and Float fields tree | commitdiff
2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data tree | commitdiff
2019-07-08 gmungocJAL-3187 derived peptide variants tweaks and tests tree | commitdiff
2019-07-05 gmungocJAL-1793 apply URL decoding when saving VCF attribute... tree | commitdiff
2019-06-18 gmungocJAL-3304 option to export linked features in Jalview... tree | commitdiff
2019-06-17 gmungocJAL-3187 update unit test - protein variants not now... tree | commitdiff
2019-06-06 gmungocJAL-3187 deletions (of Castor code) after merge from... tree | commitdiff
2019-06-06 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-05-27 gmungocJAL-3141 test file in test folder not examples tree | commitdiff
2019-05-24 Ben SoaresJAL-3141 Fixed tests tree | commitdiff
2019-05-24 Ben SoaresJAL-3141 Reworked a lot of BackupFiles to allow the... tree | commitdiff
2019-04-29 gmungocJAL-2738 JAL-2743 update unit test to match new VCF... tree | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... tree | commitdiff
2019-03-19 Ben SoaresJAL-3130 Merge of JAL-3130_Java_11_investigations-Ben... tree | commitdiff
2019-03-12 gmungocJAL-1270 missing 'alwaysRun=true' added to setup/teardown tree | commitdiff
2019-03-11 gmungocJAL-1270 JAL-2416 JAL-2839 set alwaysRun=true in test... tree | commitdiff
2019-03-04 gmungocMerge branch 'bug/JAL-3120restoreFeatureColour' into... tree | commitdiff
2019-03-01 gmungocMerge branch 'bug/JAL-2791exportFilteredFeature' into... tree | commitdiff
2019-02-28 gmungocMerge remote-tracking branch 'origin/feature/JAL-3141_b... tree | commitdiff
2019-02-28 Jim ProcterMerge branch 'feature/JAL-3141_backupfiles_for211'... merge/develop_feature/JAL-3141_backupfiles_for211 tree | commitdiff
2019-02-22 gmungocJAL-2738 don't set AF as feature score tree | commitdiff
2019-01-28 Ben SoaresJAL-3141 fixed test tree | commitdiff
2019-01-21 gmungocJAL-3187 unit tests updated and errors caught tree | commitdiff
2019-01-21 Ben SoaresJAL-3141 Fixed tests for new placement of suffix after... tree | commitdiff
2019-01-21 gmungocJAL-3187 (hacked up) show complement features on struct... tree | commitdiff
2019-01-18 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into featur... tree | commitdiff
2019-01-16 Jim ProcterMerge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA... tree | commitdiff
2019-01-09 Ben SoaresJAL-3141 removed redundant method to tests tree | commitdiff
2019-01-08 Ben SoaresJAL-3141 Made some suggested changes from code review tree | commitdiff
2018-12-19 Jim ProcterMerge branch 'features/JAL-1767pcaInProject' into bug... tree | commitdiff
2018-12-19 gmungocJAL-3178 include non-positional features in their group... bug/JAL-2791exportFilteredFeature tree | commitdiff
2018-12-13 Ben SoaresJAL-3130 Fixing a few more tests that pass on a Mac... tree | commitdiff
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor... tree | commitdiff
2018-12-03 gmungocJAL-3063 Castor removed from codebase tree | commitdiff
2018-11-08 gmungocJAL-1889 unit test tweaks for running on server tree | commitdiff
2018-11-05 Ben SoaresJAL-3141 Slightly improved message and more thorough... tree | commitdiff
2018-11-02 Ben SoaresJAL-3141 Tests now available and working, bringing... tree | commitdiff
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... tree | commitdiff
2018-09-27 gmungocJAL-2791 refactored Export Features to apply all visibi... tree | commitdiff
2018-09-21 gmungocJAL-3120 preserve feature colour/mincolour/maxcolour... bug/JAL-3120restoreFeatureColour tree | commitdiff
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch tree | commitdiff
2018-08-03 Ben SoaresJAL-3061 tree | commitdiff
2018-08-02 Ben SoaresJAL-3053 tree | commitdiff
2018-07-31 bsoaresStockholm file for test tree | commitdiff
2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2... tree | commitdiff
2018-05-24 gmungocJAL-2997 additional tests tree | commitdiff
2018-05-23 gmungocJAL-2997 unit test tree | commitdiff
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-05-07 gmungocJAL-1767 unit test for save and restore PCA features/JAL-1767pcaInProject tree | commitdiff
2018-04-06 Jim Procterfailing test for JAL-2223 tree | commitdiff
2018-03-16 gmungocMerge remote-tracking branch 'origin/releases/Release_2... tree | commitdiff
2018-03-15 gmungocJAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES tree | commitdiff
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104 tree | commitdiff
2018-02-20 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-02-20 gmungocJAL-2897 updated unit test for code change features/JAL-1793VCF tree | commitdiff
2018-02-07 Jim ProcterJAL-2780 JAL-2891 clear all windows always beforeTest... tree | commitdiff
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and... tree | commitdiff
2018-01-30 gmungocJAL-2897 generate peptide variants for synonymous codon... tree | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest tree | commitdiff
2018-01-09 gmungocJAL-2843 test roundtrip of feature colours and filters... tree | commitdiff
2018-01-09 gmungocJAL-2843 unit tests for writing filters to Jalview... tree | commitdiff
2017-12-19 Jim ProcterJAL-2880 disabled non-functional test - Jmol parser... tree | commitdiff
2017-12-08 gmungocJAL-2843 read/write feature filters from/to Jalview... tree | commitdiff
2017-12-04 gmungocJAL-2808 JAL-2850 update spike build to latest tree | commitdiff
2017-12-04 gmungocMerge branch 'spikes/mungo' into features/JAL-1793VCF tree | commitdiff
2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence refere... tree | commitdiff
2017-12-04 gmungocJAL-2845 locate reverse strand insertion as complement... tree | commitdiff
2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term... tree | commitdiff
2017-12-01 gmungocJAL-2835 additional sub-terms of sequence_variant added tree | commitdiff
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings) tree | commitdiff
2017-11-16 gmungocJAL-2835 update test for CSQ data held as a Map tree | commitdiff
2017-11-07 gmungocJAL-2069 update spike branch with latest tree | commitdiff
2017-11-06 gmungocJAL-2820 include attribute value used for feature colou... tree | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest tree | commitdiff
2017-10-24 gmungocJAL-2743 slightly fancier species/assembly matching... tree | commitdiff
2017-10-20 gmungocPush 1793 latest to spike branch tree | commitdiff
2017-10-19 gmungocJAL-2755 find gene loci for fetched xrefs where possible tree | commitdiff
2017-10-09 gmungocJAL-2738 assertion for derived protein variant added tree | commitdiff
2017-10-09 gmungocJAL-2738 remove commented code, unit test coverage tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-10-03 gmungocJAL-2738 update test for threaded VCFLoader tree | commitdiff
2017-09-28 gmungocJAL-1796 GeneLociI as distinguished DBRefEntry tree | commitdiff
2017-09-27 kiramtJAL-2674 Removing most calls to getHiddenColumnsCopy tree | commitdiff
2017-09-26 kiramtJAL-2674 Unit test for new copy constructor. tree | commitdiff
2017-09-26 kiramtJAL-2674 HiddenColumns interface tidies tree | commitdiff
2017-09-26 gmungocJAL-2738 unit test for reverse strand gene tree | commitdiff
2017-09-25 gmungocJAL-2738 use complement base for a VCF variant on rever... tree | commitdiff
2017-09-25 gmungocJAL-2738 query unindexed file, unit test for VCFLoader tree | commitdiff
2017-09-03 Jim ProcterMerge branch 'documentation/JAL-2675_release2102b1... tree | commitdiff
2017-08-22 Jim ProcterJAL-2681 cross-ref selection for targeted debugging tree | commitdiff
2017-08-22 Jim ProcterJAL-2681 source formatting tree | commitdiff
2017-08-22 gmungocJAL-2680 remove all mappings in test teardown tree | commitdiff
2017-08-10 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-09 Jim ProcterJAL-1270 testProps should also enable debug logging tree | commitdiff
2017-08-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
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