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JAL-1841 robustness fix
[jalview.git] / test /
2016-08-29 gmungocJAL-1841 robustness fix bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-26 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-26 gmungocJAL-2049 set Ensembl variant source to ENSEMBL if ... tree | commitdiff
2016-08-23 gmungocJAL-2174 markColumns() refactored inside ColumnSelection tree | commitdiff
2016-08-22 gmungocJAL-2175 code tidying tree | commitdiff
2016-08-22 gmungocJAL-2175 code/test fixes/tidy for PFAM/MSF/JSON roundtrip tree | commitdiff
2016-08-22 gmungocJAL-2011 adjust method to fix failing unit test tree | commitdiff
2016-08-19 gmungocJAL-2174 bug fixes + refactoring to allow + unit tests tree | commitdiff
2016-08-19 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-08-19 tcofoegbuJAL-1803 unit test for PDB chainCode save/restore from... tree | commitdiff
2016-08-18 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-18 gmungocJAL-2001 return copy of selection in getSelected() tree | commitdiff
2016-08-17 gmungocJAL-2172 reverted to not sorting column selection tree | commitdiff
2016-08-17 gmungocJAL-2172 handle case where column selection is not... tree | commitdiff
2016-08-16 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-16 gmungocJAL-2172 unit test added tree | commitdiff
2016-08-16 gmungocJAL-2171 matching bracket default character for rna... tree | commitdiff
2016-08-16 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-15 tcofoegbuJAL-1919 Added improvement to ensure consistence of... tree | commitdiff
2016-08-12 gmungocJAL-1841, bug fix in rna SS consensus, additions to... tree | commitdiff
2016-08-05 gmungocJAL-1448 always use UK locale for formatted date properties tree | commitdiff
2016-08-04 gmungocJAL-2164 changed to be Java 1.7 compliant tree | commitdiff
2016-08-01 Jim ProcterJAL-2164 TODO: make test pass for JMOL_PARSER tree | commitdiff
2016-08-01 Jim ProcterJAL-2164 JAL-1919 JAL-1270 use structure import setting... tree | commitdiff
2016-08-01 Jim ProcterJAL-2164 prevent jalview news from opening task/JAL-2164_mcviewforoldjalviewprojects tree | commitdiff
2016-08-01 Jim ProcterJAL-2164 clear the desktop before testStoreAndRecoverEx... tree | commitdiff
2016-08-01 Jim ProcterJAL-1772 make sure we actually return reference to... tree | commitdiff
2016-07-29 Jim ProcterJAL-1772 JAL-2164 make expanded view save/restore test... tree | commitdiff
2016-07-29 Jim ProcterJAL-2164 revert tests depending on import of legacy... tree | commitdiff
2016-07-29 tcofoegbuJAL-2157 fixed Jalview2xmlTest tree | commitdiff
2016-07-27 tcofoegbuJAL-1919 added codes for End-2-End scan for sequence... tree | commitdiff
2016-07-21 tcofoegbuResolve merge conflict for StructureImportSettings tree | commitdiff
2016-07-21 tcofoegbuJAL-2148 fix to heuristically determine chain terminati... tree | commitdiff
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop tree | commitdiff
2016-07-20 Jim ProcterJAL-1926 JAL-2106 remove startRes/endRes fields - not... tree | commitdiff
2016-07-19 gmungocJAL-391 corrected handling of gapped sequences tree | commitdiff
2016-07-19 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF... tree | commitdiff
2016-07-18 Jim ProcterJAL-2110 JAL-2145 fix out of date test for 2baee069f9ed... tree | commitdiff
2016-07-18 Jim ProcterMerge branch 'features/JAL-2068groovyAnnotationWorker... tree | commitdiff
2016-07-14 Jim ProcterJAL-2147 findMappingsBetweenSequenceAndOthers for scopi... tree | commitdiff
2016-07-12 Jim ProcterJAL-2110 note about use case for when alignAsSameSequen... tree | commitdiff
2016-07-12 Jim ProcterJAL-2110 test demonstrating limitation of current imple... tree | commitdiff
2016-07-09 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... features/JAL-2110_crossRefDuplications tree | commitdiff
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing... tree | commitdiff
2016-07-07 gmungocJAL-2110 added alignAsSameSequences to handle 'direct... tree | commitdiff
2016-07-06 gmungocJAL-2110 AlignmentUtils.alignCdsAsProtein implemented tree | commitdiff
2016-07-06 gmungocJAL-2110 ensuring mapped dbrefs between protein and cds tree | commitdiff
2016-07-06 gmungocJAL-2110 add 'mapFromId' to Mapping (for e.g. EMBL... tree | commitdiff
2016-07-06 gmungocJAL-2110 fixes and tests for adding dbrefs to EMBL... tree | commitdiff
2016-07-04 gmungocJAL-2110 added another test case (should fail but doesn't) tree | commitdiff
2016-07-04 gmungocRevert "JAL-2110 use shared alignment dataset when... tree | commitdiff
2016-07-04 gmungocJAL-2110 use shared alignment dataset when copying... tree | commitdiff
2016-07-04 gmungocJAL-2110 bug fix / test for searchDataset mappings... tree | commitdiff
2016-07-01 gmungocJAL-2110 add 'products' parameter to filter results... tree | commitdiff
2016-06-30 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-30 gmungocJAL-2110 fixes and tests for synthesized EMBLCDSPROTEIN... tree | commitdiff
2016-06-30 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-30 tcofoegbuJAL-1919 updated PDBSequenceFetcherTest and JMol parser... tree | commitdiff
2016-06-29 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-29 tcofoegbuJAL-1479 added test case to elaborate getEntityByMostOp... tree | commitdiff
2016-06-29 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-29 gmungocJAL-1270 avoid overwriting .jalview_properties with... tree | commitdiff
2016-06-29 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-29 gmungocJAL-1369 fix bug reloading a project with group sequenc... tree | commitdiff
2016-06-28 tcofoegbuJAL-1479 minor refactor and housekeeping tree | commitdiff
2016-06-28 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-28 tcofoegbuJAL-1479 improved SiftsClient test coverage and impleme... tree | commitdiff
2016-06-27 gmungocJAL-1369 additional asserts in testStoreAndRecoverRefer... tree | commitdiff
2016-06-27 gmungocJAL-1270 unit tests for HiddenSequences tree | commitdiff
2016-06-24 tcofoegbuJAL-1960 updated unit test to include the test case... tree | commitdiff
2016-06-23 Jim ProcterMerge branch 'develop' into merge_JAL-2110 tree | commitdiff
2016-06-23 Jim ProcterJAL-1270 test group fix tree | commitdiff
2016-06-23 Jim ProcterJAL-2110 JAL-1551 formatting tree | commitdiff
2016-06-23 Jim ProcterJAL-2110 enable and fix failing tests tree | commitdiff
2016-06-23 Jim ProcterJAL-2110 enable and fix test tree | commitdiff
2016-06-23 Jim ProcterJAL-2110 refactor sequenceFetcherTest to allow verifyin... tree | commitdiff
2016-06-23 Jim ProcterJAL-2110 SequenceI.isProtein method tree | commitdiff
2016-06-22 gmungocJAL-2015 fixed bug in copy constructor and added tests tree | commitdiff
2016-06-22 Jim ProcterJAL-2110 remove hardwired detection of search context... tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-2110_crossRefDuplications... tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2016-06-21 gmungocJAL-1270 remove test artefact file after test tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into... tree | commitdiff
2016-06-21 Jim ProcterJAL-1270 ensure before/after clauses have at least... tree | commitdiff
2016-06-21 gmungocJAL-1270 added runAlways=true to setUp method tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 make sure desktop is cleared before test starts tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 jalview2xml tests need to be run sequentially tree | commitdiff
2016-06-21 gmungocJAL-2110 updated unit test to match code changes tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 fix the test tree | commitdiff
2016-06-21 gmungocJAL-2113 tidy up canonicalisation of Uniprot xrefs... tree | commitdiff
2016-06-20 Jim ProcterJAL-1369 failing test tree | commitdiff
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-2068groovyAnno... features/JAL-2068groovyAnnotationWorker tree | commitdiff
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding tree | commitdiff
2016-06-20 Jim ProcterJAL-2110 pass dataset to makeCDSalignment tree | commitdiff
2016-06-20 Jim ProcterJAL-2110 copy alcodonframes only if copy constructor... tree | commitdiff
2016-06-19 Jim ProcterJAL-2110 distinct alignedcodonframe entries for tests tree | commitdiff
2016-06-19 Jim ProcterJAL-2110 test alcodonframes must be distinct tree | commitdiff
2016-06-19 Jim ProcterJAL-2110 JAL-2131 JAL-1765 remove reference to jalview... tree | commitdiff
2016-06-16 Jim Proctertests for validating start-end number/sequence length... tree | commitdiff
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