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JAL-2476 ability to drag and drop score matrix file to desktop, simplify
[jalview.git] / test /
2017-04-12 gmungocJAL-2403 ensure array held in Matrix is immutable tree | commitdiff
2017-04-11 gmungocJAL-2403 improved ScoreModelI hierarchy as per Kira... tree | commitdiff
2017-04-10 gmungocJAL-2403 unit tests for PCA.computeSimilarity, signatur... tree | commitdiff
2017-04-10 gmungocJAL-2416 test updated for reinstatement of '*' row... tree | commitdiff
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-03 gmungocJAL-2314 made non-test method non-public bug/JAL-2314 tree | commitdiff
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2314 tree | commitdiff
2017-03-31 gmungocJAL-2405 additional checks for circular reference in... tree | commitdiff
2017-03-31 gmungocJAL-2472 PrivilegedAccessor added tree | commitdiff
2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column... tree | commitdiff
2017-03-30 gmungocJAL-2346 JAL-1933 test updated to include Occupancy tree | commitdiff
2017-03-30 gmungocJAL-2346 always run setup! bug/JAL-2346annotationChoice tree | commitdiff
2017-03-30 gmungocJAL-2346 more test coverage for AnnotationColourGradient tree | commitdiff
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice tree | commitdiff
2017-03-29 gmungocJAL-2416 revert to '*' not '-' in score matrix, handle... tree | commitdiff
2017-03-28 gmungocJAL-2403 JAL-2416 pairwise score unexpected symbols... tree | commitdiff
2017-03-28 gmungocJAL-2403 further test coverage for ScoreMatrix, min... tree | commitdiff
2017-03-28 gmungocJAL-2416 more test coverage of matrix parser tree | commitdiff
2017-03-27 gmungocJAL-2416 parse score matrices in either NCBI or AAindex... tree | commitdiff
2017-03-27 gmungocJAL-2416 tidy up after switch from ' ' to '-' in score... tree | commitdiff
2017-03-27 gmungocJAL-2416 score matrix gap symbol (if any) dynamically... tree | commitdiff
2017-03-27 gmungocJAL-2416 add score model description field for tooltip... tree | commitdiff
2017-03-27 gmungocJAL-2416 use '-' not space for gap in score matrices tree | commitdiff
2017-03-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-03-24 gmungocJAL-2428 simplify TreeModel constructors, add getOrigin... tree | commitdiff
2017-03-24 gmungocJAL-2416 tests added for ScoreMatrix tree | commitdiff
2017-03-24 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-03-24 kiramtJAL-2314 Fixes to DisorderAnnotExportImport test tree | commitdiff
2017-03-24 gmungocJAL-838 move two callers off Comparison.PID and depreca... tree | commitdiff
2017-03-23 kiramtJAL-2388 unit test initialisation fix for running full... tree | commitdiff
2017-03-23 kiramtJAL-2314 Tweaks to stop thread sync issues tree | commitdiff
2017-03-23 gmungocJAL-2397 scale PCA by PID to alignment width to match... tree | commitdiff
2017-03-23 gmungocJAL-2393 updated test for removal of PIDDistanceModel tree | commitdiff
2017-03-23 kiramtJAL-2314 Re-annotated unit tests using Jws2Discoverer tree | commitdiff
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-03-22 gmungocJAL-2311 suppress autocalc'd annotation to isolate... tree | commitdiff
2017-03-21 kiramtJAL-2307 Fixed SiftsClient unit test tree | commitdiff
2017-03-21 gmungocJAL-2306 assert no DAS sources tree | commitdiff
2017-03-21 gmungocJAL-2243 update discovered features on opening structur... tree | commitdiff
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... tree | commitdiff
2017-03-20 Jim ProcterMerge branch 'bug/JAL-2421overviewboxflicker' into... tree | commitdiff
2017-03-17 kiramtJAL-2388 ViewportRanges unit test tree | commitdiff
2017-03-17 kiramtJAL-2437 Synchronization corrections and unit tests tree | commitdiff
2017-03-17 kiramtJAL-2388 Renamed column and row subtraction functions tree | commitdiff
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code tree | commitdiff
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport... tree | commitdiff
2017-03-16 kiramtJAL-2388 Unit test update tree | commitdiff
2017-03-15 kiramtJAL-2388 Unit tests and tidies tree | commitdiff
2017-03-15 gmungocJAL-2443 push getResidueBoxColour inside getResidueColour tree | commitdiff
2017-03-15 gmungocJAL-2438 handle null FeatureRenderer in FeatureColourFinder tree | commitdiff
2017-03-15 gmungocJAL-2438 refactored checks for 'no features displayed' tree | commitdiff
2017-03-14 kiramtJAL-2388 New hidden cols/seqs functions to support... tree | commitdiff
2017-03-14 gmungocJAL-2438 unit test, fixes, Javadoc updates tree | commitdiff
2017-03-14 gmungocJAL-2438 unit tests for FeatureColourFinder (transparen... tree | commitdiff
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen... tree | commitdiff
2017-03-10 kiramtJAL-2437 Fixed reordering of sequences when hiding... tree | commitdiff
2017-03-10 kiramtJAL-2388 Moving some alignment panel logic into overvie... tree | commitdiff
2017-03-09 kiramtJAL-2388 Minor fix for annotation graph, removed unit... tree | commitdiff
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on... tree | commitdiff
2017-03-07 kiramtJAL-2388 Fixed inherited&new out-by-one errors; further... tree | commitdiff
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set... tree | commitdiff
2017-03-07 kiramtJAL-2388 Additional unit tests tree | commitdiff
2017-03-07 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-03-07 kiramtJAL-2429 findColumnPosition returns 0 for cols in regio... tree | commitdiff
2017-03-07 kiramtJAL-2429 Additional fix to ColumnSelection when hidden... tree | commitdiff
2017-03-06 kiramtJAL-2388 Remove OverviewDimensions dependency on gui... tree | commitdiff
2017-03-06 kiramtJAL-2388 Corrected overview panel behaviour, updated... tree | commitdiff
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree... tree | commitdiff
2017-03-03 kiramtJAL-2429 Fix to ColumnSelection::findColumnPosition tree | commitdiff
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of... tree | commitdiff
2017-03-01 gmungocJAL-1264 smarter way to skip autocalc'd annotations... tree | commitdiff
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes... tree | commitdiff
2017-02-28 gmungocJAL-1632 'includeGaps' applied to FeatureDistanceModel... tree | commitdiff
2017-02-28 kiramtJAL-2388 Removing sources of non-determinism in unit... tree | commitdiff
2017-02-27 gmungocJAL-2416 seqspace.scm and PIDDistanceModel replaced... tree | commitdiff
2017-02-27 gmungocJAL-838 ScoreMatrix now respects SimilarityParams! tree | commitdiff
2017-02-27 gmungocJAL-838 tests for PID calculation with parameter options tree | commitdiff
2017-02-27 kiramtJAL-2388 Minor refactoring tree | commitdiff
2017-02-27 kiramtJAL-2388 Unit tests take 2 tree | commitdiff
2017-02-24 gmungocJAL-838 added 'SeqSpace' PID mode, added parameters... tree | commitdiff
2017-02-24 gmungocJAL-2403 PIDModel added (wip) tree | commitdiff
2017-02-24 gmungocJAL-1483 PIDModel potential replacement for PIDDistance... tree | commitdiff
2017-02-24 gmungocJAL-2403 JAL-1483 push 'reverseRange' inside Matrix tree | commitdiff
2017-02-23 kiramtJAL-2388 Unit tests for columns, take 1 tree | commitdiff
2017-02-23 gmungocJAL-2403 JAL-1483 changes to ScoreModelI hierarchy... tree | commitdiff
2017-02-23 gmungocJAL-2403 additional methods to support distance/similar... tree | commitdiff
2017-02-23 kiramtJAL-2388 Unit tests in progress tree | commitdiff
2017-02-21 gmungocJAL-2416 typo tree | commitdiff
2017-02-21 gmungocJAL-2416 ScoreMatrix.getMatrix() returns a defensive... tree | commitdiff
2017-02-21 gmungocJAL-2416 support roundtrip print/parse of ScoreMatrix tree | commitdiff
2017-02-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-02-21 kiramtMerge branch 'bug/JAL-2421overviewboxflicker' into tree | commitdiff
2017-02-21 kiramtMerge branch 'develop' into features/JAL-2388OverviewWindow tree | commitdiff
2017-02-21 kiramtJAL-2421 Unit test tree | commitdiff
2017-02-21 gmungocJAL-2416 more validation in ScoreMatrix constructor tree | commitdiff
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... tree | commitdiff
2017-02-20 gmungocJAL-2416 replaced dependency on ResidueProperties with... tree | commitdiff
2017-02-20 Jim ProcterMerge branch 'features/JAL-2379pcaMemory' into develop tree | commitdiff
2017-02-17 gmungocJAL-2416 scoreMatrices removed from ResidueProperties tree | commitdiff
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