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Merge branch 'develop' into merge/develop_bug/JAL-2154projectMappings
[jalview.git] / test /
2016-08-30 Jim ProcterJAL-2154 doc & AssertError trap for known failure case... tree | commitdiff
2016-08-30 Jim ProcterJAL-2154 javadoc, fix underloaded version of assertData... tree | commitdiff
2016-08-30 Jim ProcterMerge branch 'develop' into merge/develop_bug/JAL-2154p... tree | commitdiff
2016-08-29 Jim ProcterJAL-2154 endless loop fixed (hopefully :) ) tree | commitdiff
2016-08-29 Jim ProcterJAL-2154 catch insertion of duplicate CDS after retriev... tree | commitdiff
2016-08-29 Jim ProcterJAL-2154 Optional message parameter for assertDatasetNo... tree | commitdiff
2016-08-29 Jim ProcterJAL-2154 new assertDatasetIsNormalised to trivially... tree | commitdiff
2016-08-29 Jim ProcterJAL-2154 additional test that removing a duplicate... tree | commitdiff
2016-08-29 gmungocMerge branch 'bug/JAL-1841rnaSecStr' into develop tree | commitdiff
2016-08-29 gmungocJAL-1448 updated unit test for last change tree | commitdiff
2016-08-29 gmungocJAL-1841 robustness fix bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-26 Jim ProcterJAL-2154 patch regression on DbRefFetcher due to PDB... tree | commitdiff
2016-08-26 Jim ProcterJAL-2154 ENSEMBL and Uniprot tests tree | commitdiff
2016-08-26 Jim ProcterJAL-2154 report any db fetch failures as a fail at end tree | commitdiff
2016-08-26 Jim ProcterJAL-2154 ensure pass increments actually result in... tree | commitdiff
2016-08-26 Jim ProcterJAL-2154 catch and report a failures when xrefed projec... tree | commitdiff
2016-08-26 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-26 gmungocJAL-2049 set Ensembl variant source to ENSEMBL if ... tree | commitdiff
2016-08-26 Jim ProcterJAL-2154 Defer failing cross-ref combinations that... tree | commitdiff
2016-08-26 Jim ProcterJAL-2154 check that CDS panel is only nucleotide, and... tree | commitdiff
2016-08-25 Jim ProcterJAL-2106 JAL-2154 fix test for additional reference... tree | commitdiff
2016-08-25 Jim ProcterJAL-2106 JAL-2154 cross-refs from Ensembl should verify... tree | commitdiff
2016-08-25 Jim ProcterJAL-2106 tighten DBRefEntry primary seq test for PDB tree | commitdiff
2016-08-25 Jim ProcterMerge branch 'trailm' into trial_fixMakeCDSDBRefPropagation tree | commitdiff
2016-08-25 Jim ProcterMerge branch 'refactor/JAL-2106_sourceDbRef_revision... tree | commitdiff
2016-08-25 Jim ProcterMerge branch 'develop' into refactor/JAL-2106_sourceDbR... tree | commitdiff
2016-08-24 Jim ProcterJAL-2106 FIXME for test failure tree | commitdiff
2016-08-24 Jim ProcterJAL-2106 TODO - verify Embl primary refs get added tree | commitdiff
2016-08-24 Jim ProcterJAL-2106 removed setSourceDBRef, refactor getSourceDBRe... tree | commitdiff
2016-08-24 Jim ProcterJAL-2106 stricter check for 1:1 mapping (same numbering... tree | commitdiff
2016-08-24 Jim ProcterJAL-2106 rejig test to minimally verify patch that... tree | commitdiff
2016-08-24 Jim ProcterJAL-2106 DBRefEntry.isPrimary() minimal test & implemen... tree | commitdiff
2016-08-23 Jim ProcterJAL-2154 updated testMakeCDSAlignment for expected... tree | commitdiff
2016-08-23 Jim ProcterMerge branch 'develop' into bug/JAL-2154projectMappings tree | commitdiff
2016-08-23 gmungocJAL-2174 markColumns() refactored inside ColumnSelection tree | commitdiff
2016-08-22 Jim ProcterJAL-2154 - rejig test pass code for breadth-first ... tree | commitdiff
2016-08-22 gmungocJAL-2175 code tidying tree | commitdiff
2016-08-22 gmungocJAL-2175 code/test fixes/tidy for PFAM/MSF/JSON roundtrip tree | commitdiff
2016-08-22 Jim ProcterJAL-2154 always check dataset sequence for sequence... tree | commitdiff
2016-08-22 Jim ProcterJAL-2154 patch verifyAlignment so it fails for duplicat... tree | commitdiff
2016-08-22 Jim ProcterJAL-2154 tidy assert messages and fix test to verify... tree | commitdiff
2016-08-22 Jim ProcterJAL-2154 test that verifyAlignment fails for duplicate... tree | commitdiff
2016-08-22 gmungocJAL-2011 adjust method to fix failing unit test tree | commitdiff
2016-08-19 gmungocJAL-2174 bug fixes + refactoring to allow + unit tests tree | commitdiff
2016-08-19 Jim ProcterJAL-2154 major rejigging of test looping again tree | commitdiff
2016-08-19 Jim ProcterJAL-2154 disable DAS sources for Jalview2XML tests tree | commitdiff
2016-08-19 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-08-19 tcofoegbuJAL-1803 unit test for PDB chainCode save/restore from... tree | commitdiff
2016-08-19 Jim ProcterJAL-2154 fix looping structure so for a particular... tree | commitdiff
2016-08-19 Jim ProcterJAL-2154 drop unused hashes tree | commitdiff
2016-08-19 Jim ProcterJAL-2154 testNG like assertAlignmentDatasetRefs static... tree | commitdiff
2016-08-19 Jim ProcterJAL-2154 use right reference string for recovering... tree | commitdiff
2016-08-18 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-18 gmungocJAL-2001 return copy of selection in getSelected() tree | commitdiff
2016-08-17 gmungocJAL-2172 reverted to not sorting column selection tree | commitdiff
2016-08-17 gmungocJAL-2172 handle case where column selection is not... tree | commitdiff
2016-08-16 Jim ProcterJAL-2154 verify sequenceI/dataset refs for codonmappings tree | commitdiff
2016-08-16 Jim ProcterJAL-2154 check alignment isn’t null before validating tree | commitdiff
2016-08-16 Jim ProcterJAL-2154 [test] verify reference integrity for alignmen... tree | commitdiff
2016-08-16 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-16 gmungocJAL-2172 unit test added tree | commitdiff
2016-08-16 gmungocJAL-2171 matching bracket default character for rna... tree | commitdiff
2016-08-16 Jim ProcterJAL-2154 formatting tree | commitdiff
2016-08-16 Jim ProcterJAL-2154 new assert to check reference integrity for... tree | commitdiff
2016-08-16 Jim ProcterJAL-2154 xref test harness - test fails if there are... tree | commitdiff
2016-08-16 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-15 tcofoegbuJAL-1919 Added improvement to ensure consistence of... tree | commitdiff
2016-08-13 Jim ProcterJAL-2154 refactor CrossRef UI code to its own class tree | commitdiff
2016-08-13 Jim ProcterJAL-2154 check if the desktop is constructed before... tree | commitdiff
2016-08-12 gmungocJAL-1841, bug fix in rna SS consensus, additions to... tree | commitdiff
2016-08-11 Jim ProcterJAL-2154 clear the desktop before every 2xml test tree | commitdiff
2016-08-11 Jim ProcterJAL-2154 refactor setup/teardown from Jalview2xml for... tree | commitdiff
2016-08-05 gmungocJAL-1448 always use UK locale for formatted date properties tree | commitdiff
2016-08-04 Jim ProcterJAL-2154 make sure all sequences referenced via DBRefEn... tree | commitdiff
2016-08-04 Jim ProcterJAL-2110 comment on failing test (consider skipping... tree | commitdiff
2016-08-04 gmungocJAL-2164 changed to be Java 1.7 compliant tree | commitdiff
2016-08-01 Jim ProcterJAL-2164 TODO: make test pass for JMOL_PARSER tree | commitdiff
2016-08-01 Jim ProcterJAL-2164 JAL-1919 JAL-1270 use structure import setting... tree | commitdiff
2016-08-01 Jim ProcterJAL-2164 prevent jalview news from opening task/JAL-2164_mcviewforoldjalviewprojects tree | commitdiff
2016-08-01 Jim ProcterJAL-2164 clear the desktop before testStoreAndRecoverEx... tree | commitdiff
2016-08-01 Jim ProcterJAL-1772 make sure we actually return reference to... tree | commitdiff
2016-07-29 Jim ProcterJAL-1772 JAL-2164 make expanded view save/restore test... tree | commitdiff
2016-07-29 Jim ProcterJAL-2164 revert tests depending on import of legacy... tree | commitdiff
2016-07-29 tcofoegbuJAL-2157 fixed Jalview2xmlTest tree | commitdiff
2016-07-27 tcofoegbuJAL-1919 added codes for End-2-End scan for sequence... tree | commitdiff
2016-07-21 tcofoegbuResolve merge conflict for StructureImportSettings tree | commitdiff
2016-07-21 tcofoegbuJAL-2148 fix to heuristically determine chain terminati... tree | commitdiff
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop tree | commitdiff
2016-07-20 Jim ProcterJAL-1926 JAL-2106 remove startRes/endRes fields - not... tree | commitdiff
2016-07-19 gmungocJAL-391 corrected handling of gapped sequences tree | commitdiff
2016-07-19 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF... tree | commitdiff
2016-07-18 Jim ProcterJAL-2110 JAL-2145 fix out of date test for 2baee069f9ed... tree | commitdiff
2016-07-18 Jim ProcterMerge branch 'features/JAL-2068groovyAnnotationWorker... tree | commitdiff
2016-07-14 Jim ProcterJAL-2147 findMappingsBetweenSequenceAndOthers for scopi... tree | commitdiff
2016-07-12 Jim ProcterJAL-2110 note about use case for when alignAsSameSequen... tree | commitdiff
2016-07-12 Jim ProcterJAL-2110 test demonstrating limitation of current imple... tree | commitdiff
2016-07-09 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... features/JAL-2110_crossRefDuplications tree | commitdiff
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing... tree | commitdiff
2016-07-07 gmungocJAL-2110 added alignAsSameSequences to handle 'direct... tree | commitdiff
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