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JAL-2163 set title for the alignframe from restored view state
[jalview.git] / test /
2016-07-19 gmungocJAL-391 corrected handling of gapped sequences tree | commitdiff
2016-07-19 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF... tree | commitdiff
2016-07-18 Jim ProcterJAL-2110 JAL-2145 fix out of date test for 2baee069f9ed... tree | commitdiff
2016-07-18 Jim ProcterMerge branch 'features/JAL-2068groovyAnnotationWorker... tree | commitdiff
2016-07-14 Jim ProcterJAL-2147 findMappingsBetweenSequenceAndOthers for scopi... tree | commitdiff
2016-07-12 Jim ProcterJAL-2110 note about use case for when alignAsSameSequen... tree | commitdiff
2016-07-12 Jim ProcterJAL-2110 test demonstrating limitation of current imple... tree | commitdiff
2016-07-09 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... features/JAL-2110_crossRefDuplications tree | commitdiff
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing... tree | commitdiff
2016-07-07 gmungocJAL-2110 added alignAsSameSequences to handle 'direct... tree | commitdiff
2016-07-06 gmungocJAL-2110 AlignmentUtils.alignCdsAsProtein implemented tree | commitdiff
2016-07-06 gmungocJAL-2110 ensuring mapped dbrefs between protein and cds tree | commitdiff
2016-07-06 gmungocJAL-2110 add 'mapFromId' to Mapping (for e.g. EMBL... tree | commitdiff
2016-07-06 gmungocJAL-2110 fixes and tests for adding dbrefs to EMBL... tree | commitdiff
2016-07-04 gmungocJAL-2110 added another test case (should fail but doesn't) tree | commitdiff
2016-07-04 gmungocRevert "JAL-2110 use shared alignment dataset when... tree | commitdiff
2016-07-04 gmungocJAL-2110 use shared alignment dataset when copying... tree | commitdiff
2016-07-04 gmungocJAL-2110 bug fix / test for searchDataset mappings... tree | commitdiff
2016-07-01 gmungocJAL-2110 add 'products' parameter to filter results... tree | commitdiff
2016-06-30 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-30 gmungocJAL-2110 fixes and tests for synthesized EMBLCDSPROTEIN... tree | commitdiff
2016-06-30 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-30 tcofoegbuJAL-1919 updated PDBSequenceFetcherTest and JMol parser... tree | commitdiff
2016-06-29 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-29 tcofoegbuJAL-1479 added test case to elaborate getEntityByMostOp... tree | commitdiff
2016-06-29 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-29 gmungocJAL-1270 avoid overwriting .jalview_properties with... tree | commitdiff
2016-06-29 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-29 gmungocJAL-1369 fix bug reloading a project with group sequenc... tree | commitdiff
2016-06-28 tcofoegbuJAL-1479 minor refactor and housekeeping tree | commitdiff
2016-06-28 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-28 tcofoegbuJAL-1479 improved SiftsClient test coverage and impleme... tree | commitdiff
2016-06-27 gmungocJAL-1369 additional asserts in testStoreAndRecoverRefer... tree | commitdiff
2016-06-27 gmungocJAL-1270 unit tests for HiddenSequences tree | commitdiff
2016-06-24 tcofoegbuJAL-1960 updated unit test to include the test case... tree | commitdiff
2016-06-23 Jim ProcterMerge branch 'develop' into merge_JAL-2110 tree | commitdiff
2016-06-23 Jim ProcterJAL-1270 test group fix tree | commitdiff
2016-06-23 Jim ProcterJAL-2110 JAL-1551 formatting tree | commitdiff
2016-06-23 Jim ProcterJAL-2110 enable and fix failing tests tree | commitdiff
2016-06-23 Jim ProcterJAL-2110 enable and fix test tree | commitdiff
2016-06-23 Jim ProcterJAL-2110 refactor sequenceFetcherTest to allow verifyin... tree | commitdiff
2016-06-23 Jim ProcterJAL-2110 SequenceI.isProtein method tree | commitdiff
2016-06-22 gmungocJAL-2015 fixed bug in copy constructor and added tests tree | commitdiff
2016-06-22 Jim ProcterJAL-2110 remove hardwired detection of search context... tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-2110_crossRefDuplications... tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2016-06-21 gmungocJAL-1270 remove test artefact file after test tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into... tree | commitdiff
2016-06-21 Jim ProcterJAL-1270 ensure before/after clauses have at least... tree | commitdiff
2016-06-21 gmungocJAL-1270 added runAlways=true to setUp method tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 make sure desktop is cleared before test starts tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 jalview2xml tests need to be run sequentially tree | commitdiff
2016-06-21 gmungocJAL-2110 updated unit test to match code changes tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 fix the test tree | commitdiff
2016-06-21 gmungocJAL-2113 tidy up canonicalisation of Uniprot xrefs... tree | commitdiff
2016-06-20 Jim ProcterJAL-1369 failing test tree | commitdiff
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-2068groovyAnno... features/JAL-2068groovyAnnotationWorker tree | commitdiff
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding tree | commitdiff
2016-06-20 Jim ProcterJAL-2110 pass dataset to makeCDSalignment tree | commitdiff
2016-06-20 Jim ProcterJAL-2110 copy alcodonframes only if copy constructor... tree | commitdiff
2016-06-19 Jim ProcterJAL-2110 distinct alignedcodonframe entries for tests tree | commitdiff
2016-06-19 Jim ProcterJAL-2110 test alcodonframes must be distinct tree | commitdiff
2016-06-19 Jim ProcterJAL-2110 JAL-2131 JAL-1765 remove reference to jalview... tree | commitdiff
2016-06-16 Jim Proctertests for validating start-end number/sequence length... tree | commitdiff
2016-06-16 Jim ProcterJAL-2110 change test for desired behaviour of getCodonF... tree | commitdiff
2016-06-16 Jim ProcterJAL-2110 throw implementation error if not given a... tree | commitdiff
2016-06-16 gmungocJAL-2112 optimisation of EMBL CDS parsing tree | commitdiff
2016-06-15 Jim ProcterMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-15 gmungocJAL-2025 unit tests added tree | commitdiff
2016-06-15 gmungocJAL-2101 unit test updated to match config file tree | commitdiff
2016-06-14 gmungocJAL-2114 more helpful reporting of parse failures tree | commitdiff
2016-06-14 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-14 gmungocJAL-2110 fixes to dbref resolution and mappings, use... tree | commitdiff
2016-06-14 tcofoegbuJAL-2047 resolved structure chooser's displayed column... tree | commitdiff
2016-06-14 gmungocJAL-1686 JAL-2110 equals and/or hashCode method added tree | commitdiff
2016-06-10 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-10 tcofoegbuJAL-1479 updated SIFTS FTP download URL, added improvem... tree | commitdiff
2016-06-10 Jim ProcterJAL-1941 remove improper test tag from Annotate3D test... tree | commitdiff
2016-06-10 Jim ProcterJAL-1941 Annotate3d tests should be in network group tree | commitdiff
2016-06-09 gmungocJAL-2110 work in progress tree | commitdiff
2016-06-03 gmungocJAL-2110 random stuff tree | commitdiff
2016-06-02 gmungocMerge branch 'develop' into features/JAL-2110_makeSense... tree | commitdiff
2016-06-01 Jim ProcterJAL-2038 fix tests for case insensitive eSequenceIdMatcher tree | commitdiff
2016-05-31 gmungocJAL-2110 refactor + tests to allow a dbref version... tree | commitdiff
2016-05-31 Jim ProcterMerge branch 'develop' into features/JAL-2113_emblXml1.2 tree | commitdiff
2016-05-30 gmungocJAL-1670 JAL-2018 updated unit test for added example... tree | commitdiff
2016-05-30 gmungocJAL-1989 equals method strengthened to fully match... tree | commitdiff
2016-05-27 gmungocJAL-1989 added hashCode and equals, renamed field to... tree | commitdiff
2016-05-26 gmungocJAL-2079 update examples to new pfam.xfam.org domain tree | commitdiff
2016-05-26 gmungocJAL-2113 additions to embl_mapping.xml / data models... features/JAL-2113_emblXml1.2 tree | commitdiff
2016-05-25 gmungocJAL-2110 wip CrossRefs rewrite of CrossRef tree | commitdiff
2016-05-23 gmungocJAL-2113 remove spaces in sequence from unmarshalling... tree | commitdiff
2016-05-23 gmungocMerge branch 'develop' into features/JAL-2110_makeSense... tree | commitdiff
2016-05-23 gmungocJAL-2114 save 'raw' ENA location as a sequence feature... tree | commitdiff
2016-05-23 gmungocJAL-2113 EBIFetchClient refactor / unit tests / remove... tree | commitdiff
2016-05-23 gmungocMerge branch 'develop' into features/JAL-2113_emblXml1.2 tree | commitdiff
2016-05-20 gmungocJAL-2114 explicit invalid test cases added tree | commitdiff
2016-05-20 gmungocJAL-2113 corrected test to use valid location syntax tree | commitdiff
2016-05-20 gmungocJAL-2113 embl_mapping.xml and code updated for EMBL... tree | commitdiff
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