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2022-06-10	Jim Procter	JAL-2349 JAL-4027 JAL-3855 quick hack to add contact...	commit \| commitdiff \| tree
2022-06-10	Jim Procter	JAL-4027 getter for contact matrices on the Alignment.	commit \| commitdiff \| tree
2022-06-10	Jim Procter	JAL-1551 formatting	commit \| commitdiff \| tree
2022-06-10	Jim Procter	Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...	commit \| commitdiff \| tree
2022-06-09	Jim Procter	JAL-4012 - JAL-4020 release notes and a bit of ‘troubleshoot...	commit \| commitdiff \| tree
2022-06-09	Jim Procter	Merge branch 'bug/JAL-4020_add_pymolwin_paths' into...	commit \| commitdiff \| tree
2022-06-09	Jim Procter	JAL-4004 add the autogenerated whatsNew.html and releases...	commit \| commitdiff \| tree
2022-06-09	Jim Procter	JAL-4014 release notes for JAL-4026 patches	commit \| commitdiff \| tree
2022-06-09	Jim Procter	JAL-4026 increase timeouts for command line ops	commit \| commitdiff \| tree
2022-06-09	Jim Procter	JAL-4026 ignore StructureSelectionManager events if...	commit \| commitdiff \| tree
2022-06-09	Jim Procter	JAL-4026 always wait 50ms before checking if the calculation...	commit \| commitdiff \| tree
2022-06-09	Jim Procter	JAL-4026 update the viewport’s wrapped width after...	commit \| commitdiff \| tree
2022-06-08	Jim Procter	JAL-4014 release notes for JAL-4023 and JAL-4024	commit \| commitdiff \| tree
2022-06-08	Jim Procter	Merge branch 'improvement/JAL-4023_snotation_for_trees...	commit \| commitdiff \| tree
2022-06-08	Jim Procter	Merge branch 'patch/JAL-4024_jumpScrollHang' into develop	commit \| commitdiff \| tree
2022-06-08	Jim Procter	JAL-4012 what’s new and release notes (in the new styleee...	commit \| commitdiff \| tree
2022-06-08	Jim Procter	JAL-4004 delete temporary file mistakenly checked in	commit \| commitdiff \| tree
2022-06-08	Jim Procter	Merge branch 'issues/JAL-3553+JAL-3978+JAL-3989+JAL...	commit \| commitdiff \| tree
2022-06-08	Jim Procter	JAL-4024 only render partially when new view overlaps...	commit \| commitdiff \| tree
2022-06-06	Jim Procter	JAL-4023 use %g for distances (scientific notation...	commit \| commitdiff \| tree
2022-06-06	Jim Procter	JAL-4023 store distances as doubles	commit \| commitdiff \| tree
2022-05-11	Jim Procter	Merge branch 'patch/JAL-4008_jabaws_2_2_1_patch' into...	commit \| commitdiff \| tree
2022-05-11	Jim Procter	JAL-4012 JAL-4008 release notes for Jalview 2.11.2.3	commit \| commitdiff \| tree
2022-05-10	Jim Procter	JAL-4008 update jabaws client to 2.2.1 - definitely...	commit \| commitdiff \| tree
2022-04-19	Jim Procter	Merge branch 'develop' into releases/Release_2_11_2_Branch	commit \| commitdiff \| tree
2022-04-19	Jim Procter	JAL-3992 bump version and report updates in 2.11.2...	commit \| commitdiff \| tree
2022-04-19	Jim Procter	Merge branch 'bug/JAL-3997_NPE_in_wrapped_mode' into...	commit \| commitdiff \| tree
2022-04-19	Jim Procter	Merge branch 'bug/JAL-3365_extendedDSSP_via_stockholm...	commit \| commitdiff \| tree
2022-04-18	Jim Procter	JAL-3997 check for tooltip being null before checking...	commit \| commitdiff \| tree
2022-04-18	Jim Procter	Merge branch 'task/JAL-3992_update_docs' into bug/JAL...	commit \| commitdiff \| tree
2022-04-18	Jim Procter	JAL-3992 fix path	commit \| commitdiff \| tree
2022-04-16	Jim Procter	JAL-3365 expand range of allowed DSSP secondary structure...	commit \| commitdiff \| tree
2022-04-13	Jim Procter	JAL-3992 shift+arrow to jump to next gap/residue in...	commit \| commitdiff \| tree
2022-04-05	Jim Procter	Merge branch 'develop' into releases/Release_2_11_2_Branch	commit \| commitdiff \| tree
2022-04-05	Jim Procter	JAL-3990 release notes and what’s new	commit \| commitdiff \| tree
2022-04-05	Jim Procter	Merge branch 'develop' into releases/Release_2_11_2_Branch	commit \| commitdiff \| tree
2022-04-05	Jim Procter	JAL-3981 patch tests and remove errant imports	commit \| commitdiff \| tree
2022-04-05	Jim Procter	Merge branch 'develop' into releases/Release_2_11_2_Branch	commit \| commitdiff \| tree
2022-04-05	Jim Procter	JAL-3990 gradle spotlessApply	commit \| commitdiff \| tree
2022-04-05	Jim Procter	JAL-3990 release notes for 2.11.2.1 patch release	commit \| commitdiff \| tree
2022-04-05	Jim Procter	Merge branch 'bug/JAL-3980_JAL-3981_tooltips_sequence_detail...	commit \| commitdiff \| tree
2022-03-31	Jim Procter	Merge branch 'develop' into releases/Release_2_11_2_Branch	commit \| commitdiff \| tree
2022-03-31	Jim Procter	JAL-3983 release note for JAL-3985	commit \| commitdiff \| tree
2022-03-31	Jim Procter	Merge branch 'bug/JAL-3085_avoid_414_error_for_PDBFTS...	commit \| commitdiff \| tree
2022-03-31	Jim Procter	JAL-3085 update tests and mock responses, new P0dtd1...	commit \| commitdiff \| tree
2022-03-31	Jim Procter	JAL-3985 formatting	commit \| commitdiff \| tree
2022-03-31	Jim Procter	JAL-3985 split PDB id queries into multiple queries...	commit \| commitdiff \| tree
2022-03-30	Jim Procter	Merge branch 'patch/JAL-3976_3dbeaconsnull' into develop	commit \| commitdiff \| tree
2022-03-30	Jim Procter	JAL-3976 fix mock PDBFTS query & responses	commit \| commitdiff \| tree
2022-03-30	Jim Procter	JAL-3983 known issue note for JAL-3984	commit \| commitdiff \| tree
2022-03-30	Jim Procter	JAL-3983 release notes for JAL-3975 and known issue...	commit \| commitdiff \| tree
2022-03-30	Jim Procter	Merge branch 'bug/JAL-360+JAL-3975_keyboard_input_lost_after...	commit \| commitdiff \| tree
2022-03-30	Jim Procter	JAL-360 JAL-3975 update parent for text colour dialog...	commit \| commitdiff \| tree
2022-03-30	Ben Soares	JAL-360 JAL-3975 make AlignFrame the parent of FeatureEditor...	commit \| commitdiff \| tree
2022-03-30	Jim Procter	JAL-3983 update release notes for JAL-3973	commit \| commitdiff \| tree
2022-03-30	Jim Procter	JAL-3973 exclude the original RELEASE file so gradle...	commit \| commitdiff \| tree
2022-03-30	Jim Procter	Merge branch 'bug/JAL-3973_source_tarball_not_building...	commit \| commitdiff \| tree
2022-03-30	Jim Procter	JAL-3983 release 2.11.2.1 date and release notes	commit \| commitdiff \| tree
2022-03-25	Jim Procter	JAL-3980 JAL-3979 TODOs	commit \| commitdiff \| tree
2022-03-25	Jim Procter	JAL-3980 defensive copy - inefficient but fixes bug	commit \| commitdiff \| tree
2022-03-25	Jim Procter	JAL-3981 Additional line breaks - sort of helps	commit \| commitdiff \| tree
2022-03-24	Jim Procter	JAL-3981 strategic newlines to help speed up Java's...	commit \| commitdiff \| tree
2022-03-23	Jim Procter	JAL-3976 skip entries with null values when analyzing	commit \| commitdiff \| tree
2022-03-23	Jim Procter	JAL-3976 update tests	commit \| commitdiff \| tree
2022-03-09	Jim Procter	Merge branch 'develop' into releases/Release_2_11_2_Branch	commit \| commitdiff \| tree
2022-03-09	Jim Procter	Merge branch 'develop' into releases/Release_2_11_2_Branch	commit \| commitdiff \| tree
2022-03-09	Jim Procter	JAL-3746 JAL-3841 fix README typo	commit \| commitdiff \| tree
2022-03-09	Jim Procter	Merge branch 'develop' into releases/Release_2_11_2_Branch	commit \| commitdiff \| tree
2022-03-09	Jim Procter	JAL-3746 more docs tweaking and release notes	commit \| commitdiff \| tree
2022-03-09	Jim Procter	Merge branch 'spike/try_spotless_JAL-3438' into develop	commit \| commitdiff \| tree
2022-03-08	Jim Procter	JAL-3746 apply copyright to tests	commit \| commitdiff \| tree
2022-03-08	Jim Procter	JAL-3746 apply copyright to source	commit \| commitdiff \| tree
2022-03-08	Jim Procter	JAL-3438 spotless for 2.11.2.0	commit \| commitdiff \| tree
2022-03-08	Jim Procter	Merge branch 'develop' into releases/Release_2_11_2_Branch	commit \| commitdiff \| tree
2022-03-08	Jim Procter	JAL-3746 JAL-3841 new README and finalising 2.11.2...	commit \| commitdiff \| tree
2022-03-08	Jim Procter	JAL-3108 updated Ensembl client and model species names	commit \| commitdiff \| tree
2022-03-08	Jim Procter	JAL-3746 new release date for 2.11.2	commit \| commitdiff \| tree
2022-03-08	Jim Procter	JAL-3746 JAL-3103 java.awt.Desktop.showURL method mechanism...	commit \| commitdiff \| tree
2022-03-08	Jim Procter	Merge branch 'bug/JAL-3103_browser_launcher_problems_macos_a...	commit \| commitdiff \| tree
2022-03-07	Jim Procter	Merge branch 'develop' into releases/Release_2_11_2_Branch	commit \| commitdiff \| tree
2022-03-07	Jim Procter	JAL-3647 release notes for JAL-1842 JAL-3509 JAL-3881...	commit \| commitdiff \| tree
2022-03-07	Jim Procter	JAL-3685 - two single quotes when replacements are...	commit \| commitdiff \| tree
2022-03-04	Jim Procter	Merge branch 'develop' into releases/Release_2_11_2_Branch	commit \| commitdiff \| tree
2022-03-04	Jim Procter	JAL-3647 release notes for hdpi/laf scaling JAL-3608...	commit \| commitdiff \| tree
2022-03-04	Jim Procter	JAL-3746 structure mapping preference docs for JAL...	commit \| commitdiff \| tree
2022-03-04	Jim Procter	JAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user...	commit \| commitdiff \| tree
2022-03-04	Jim Procter	JAL-3746 JAL-3812 new argument ‘-nohtmltemplates’ and...	commit \| commitdiff \| tree
2022-03-04	Jim Procter	JAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disables...	commit \| commitdiff \| tree
2022-03-04	Jim Procter	JAL-3746 JAL-3814 don’t automatically launch the news...	commit \| commitdiff \| tree
2022-03-04	Jim Procter	JAL-3746 JAL-3814 NONEWS property	commit \| commitdiff \| tree
2022-03-04	Jim Procter	Merge branch 'develop' into releases/Release_2_11_2_Branch	commit \| commitdiff \| tree
2022-03-04	Jim Procter	JAL-3608 JAL-3830 tweaked the what’s new text and updated...	commit \| commitdiff \| tree
2022-03-04	Jim Procter	Merge branch 'develop' into releases/Release_2_11_2_Branch	commit \| commitdiff \| tree
2022-03-04	Jim Procter	JAL-3608 JAL-3830 simplified command line docs a bit	commit \| commitdiff \| tree
2022-03-04	Jim Procter	Merge branch 'doc/JAL-3608+JAL-3830_added_to_help_docs...	commit \| commitdiff \| tree
2022-03-02	Jim Procter	Merge branch 'develop' into releases/Release_2_11_2_Branch	commit \| commitdiff \| tree
2022-03-02	Jim Procter	Merge branch 'bug/JAL-3962_awt_dll_problem' into develop	commit \| commitdiff \| tree
2022-03-02	Jim Procter	JAL-3746 release notes for JAL-3867	commit \| commitdiff \| tree
2022-03-02	Jim Procter	JAL-3746 release note for JAL-3907 building Jalview...	commit \| commitdiff \| tree
2022-03-02	Jim Procter	JAL-3746 release note for JAL-3618 Vaqua config so...	commit \| commitdiff \| tree
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