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JAL-2446 merged to spike branch
2017-06-09 gmungocJAL-2446 merged to spike branch
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2017-01-17 gmungocMerge branch 'features/JAL-2295setChimeraAttributes...
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2017-01-17 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2017-01-17 gmungocJAL-2370 fix bug when hiding a range including two...
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2017-01-16 gmungocJAL-1270 class renamed
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2017-01-16 gmungocJAL-2380 fix Matrix.postMultiply()
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2017-01-16 gmungocJAL-1270 tweaks to AlignmentGenerator / client class
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2017-01-12 gmungocJAL-1270 renamed AlignmentGenerator, and added peptide...
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2017-01-12 gmungocJAL-2379 null references to PCA model when panel is...
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2017-01-12 gmungocJAL-2344 now flagging formats as 'identifiable' instead...
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2017-01-11 gmungocJAL-2344 separated AlignmentFileI into AlignmentFileReaderI,
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2017-01-11 gmungocJAL-2344 groovy script that registers a new file format
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2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
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2017-01-11 gmungocJAL-2344 addSequence() method added to support Groovy...
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2017-01-10 gmungocJAL-2377 avoid infinite loop formatting 1.0E-310
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2017-01-05 gmungocJAL-2374 unit test for (modified) Alignment.findGroup()
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2017-01-05 gmungocJAL-2374 fix popup out by one and multiple groups bugs
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2017-01-05 gmungocJAL-2373 set state of Above PID, By Conservation in...
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2016-12-16 gmungocJAL-2356 enhanced unit test to verify reuse (or not...
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2016-12-09 gmungocJAL-2105 updated for reviewed REST version 4.8
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2016-12-09 gmungocJAL-1895 suppress RNA interaction colour option
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2016-12-08 gmungocMerge branch 'bug/JAL-2358phantomChimera' into spikes...
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2016-12-08 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-12-08 gmungocJAL-2358 ensure mappings removed on close Chimera;...
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2016-12-08 gmungocJAL-2359 add Window menu entry only after all danger...
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2016-12-07 gmungocJAL-2356 use cached Sifts file if not expired
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2016-12-07 gmungocJAL-2354 handle error response when fetching features
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2016-12-07 gmungocJAL-2344 handle null format, simplify JalviewFileChooser...
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2016-12-05 gmungocJAL-1753 JAL-1596 JAL-1933 ensure AWT updates are on...
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2016-12-05 gmungocMerge branch 'features/JAL-1933_occupancy' into features...
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2016-12-02 gmungocMerge branch 'features/JAL-1933_occupancy' into features...
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2016-12-02 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-12-02 gmungocJAL-1933 gap value as description; minor formatting
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2016-11-30 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-30 gmungocJAL-2344 use ".cif" for saved mmCIF file (and refactor...
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2016-11-30 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-29 gmungocJAL-2329 tests to confirm behaviour of Java extended...
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2016-11-29 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-29 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-11-29 gmungocJAL-2344 corrected conversion of Type enum to FileFormat
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2016-11-29 gmungocJAL-2344 FileFormat.isStructureFile replaces
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2016-11-28 gmungocMerge branch 'develop' into trialMerge
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2016-11-28 gmungocJAL-2344 added FileFormatI.isStructureFile()
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2016-11-28 gmungocJAL-2345 cache generated ImageIcon per file path
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2016-11-25 gmungocJAL-2344 dynamically determine recognised extensions...
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2016-11-25 gmungocMerge branch 'develop' into trialMerge
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2016-11-25 gmungocJAL-2344 override to ignore (obsolete?) JalviewFileView
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2016-11-25 gmungocJAL-2344 use .equals() to compare FileFormatI objects
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2016-11-25 gmungocJAL-2344 correct roundtrip test to exclude Jalview...
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2016-11-24 gmungocDistinguish text-only output formats and others (.jar...
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2016-11-24 gmungocFurther tweaks to get tests passing
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2016-11-24 gmungocFileFormatI further tweaks, clean compile
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2016-11-23 gmungocJAL-1738 Spanish versions added
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2016-11-23 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-22 gmungocJAL-2337 fix: only adjust once for scroll offset
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2016-11-22 gmungocJAL-1919 JAL-2177 handle empty pdbentries list correctly
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2016-11-22 gmungocJAL-2277 refactored AlignmentPanel.printUnwrapped to...
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2016-11-21 gmungocJAL-2333 test beefed up with gaps
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2016-11-21 gmungocJAL-2333 corrected select columns with 'contact' feature
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2016-11-21 gmungocMerge branch 'develop' into bug/JAL-2323disulfideOverview
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2016-11-18 gmungocJAL-98 with the two types missing from last commit...
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2016-11-17 gmungocJAL-2323 revert to thread-safe iteration over array...
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2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns
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2016-11-17 gmungocJAL-98 javadoc, third party acknowledgements (and very...
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2016-11-17 gmungocJAL-2327 disulfide bond abstracted to SequenceFeature...
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2016-11-17 gmungocJAL-2327 add isContactFeature
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2016-11-16 gmungocJAL-2296 unit test for reading Chimera attributes to...
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2016-11-16 gmungocJAL-2323 render disulfide bond correctly on overview...
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2016-11-16 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-16 gmungocJAL-2324 fix and tests for comparison of Float.NaN...
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2016-11-16 gmungocJAL-2319 corrected reporting of SIFTS mapping
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2016-11-16 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-16 gmungocJAL-2296 don't copy attribute with value False
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2016-11-16 gmungocJAL-2295 don't exclude RESNUM from transfer to Chimera
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2016-11-14 gmungocJAL-2296 new code and refactoring for 'copy Chimera...
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2016-11-14 gmungocJAL-2295 don't copy 'Chimera' features back to Chimera
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2016-11-14 gmungocJAL-2296 parse Chimera atomspec to AtomSpec
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2016-11-14 gmungocJAL-2296 report whether SequenceFeature actually added...
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2016-11-14 gmungocJAL-2295 JAL-2296 skeleton 'attributes to features...
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2016-11-11 gmungocMerge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-11 gmungocJAL-2295 tests now 'network-free' with local PDB and...
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2016-11-11 gmungocJAL-2295 JAL-2269 JAL-2319 mockable SIFTS file, fix...
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2016-11-11 gmungocJAL-2295 improved integrity of 'isFinishedInit' flag
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2016-11-11 gmungocJAL-1270 corrected command-line args
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2016-11-11 gmungocJAL-2295 set finishedInit to false before checking...
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2016-11-11 gmungocJAL-2295 test that verifies transfer of features to...
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2016-11-11 gmungocJAL-2295 sorted properties for readability
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2016-11-11 gmungocJAL-2295 (optionally) return Chimera command reply
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2016-11-11 gmungocJAL-2295 correct test for Float.isNaN(score) !
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2016-11-10 gmungocJAL-2295 additional tests, stronger sanitisation of...
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2016-11-10 gmungocJAL-2320 thread to close Chimera viewer panel if Chimera...
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2016-11-10 gmungocJAL-2320 added getViewer() method to return Chimera...
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2016-11-09 gmungocJAL-2295 set attributes commands include feature value...
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2016-11-09 gmungocJAL-2295 single constant for "RESNUM" feature name
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2016-11-08 gmungocJAL-2295 JAL-1596 method to pass a command script file...
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2016-11-08 gmungocJAL-2301 corrected search example to match AA properties...
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2016-11-08 gmungocJAL-2301 made T hydrophobic as per the cited conservation...
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2016-11-08 gmungocJAL-1961 added link to GFF3 format as well as GFF2
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2016-11-08 gmungocJAL-2295 feature and colour commands refactored to...
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2016-11-08 gmungocJAL-2295 method added to return a compact mapped range...
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