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fix for JAL-1678
2015-02-27 Jim Procterfix for JAL-1678
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2015-02-12 Jim ProcterJAL-1350 added to 2.9 release notes
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2015-02-12 Jim ProcterJAL-1350 document changed behaviour
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2015-02-12 Jim ProcterJAL-1350 forgot to remove empty test
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2015-02-12 Jim ProcterJAL-1350 pass the columnselection rather then selected...
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2015-02-12 Jim ProcterJAL-1350 cloned method and tested equivalence for using...
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2015-02-12 Jim ProcterJAL-1115 switch to lists in SequenceGroup
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2015-02-12 Jim ProcterJAL-1115 typecast
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2015-02-12 Jim Procterjavadoc
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2015-02-12 Jim ProcterJAL-1115 List rather than vector for sequence groups...
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2015-02-06 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement...
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2015-02-05 Jim ProcterJAL-1643 jarred up the quaqua native libraries and...
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2015-02-05 Jim ProcterJAL-1643 added quaqua filechooser and jni libraries...
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2015-02-05 Jim ProcterJAL-1643 correct version of quaqua (8) plus THIRDPARTYLIB...
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2015-02-05 Jim ProcterJAL-1643 renamed quaqua library to add version number
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2015-01-28 Jim ProcterJAL-1565 automatically mark query sequence as the sequence...
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2015-01-28 Jim Procter JAL-674 patch to make Mapping.compareTransferredToRefPDB...
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2015-01-27 Jim ProcterJAL-674 JAL-1270 added settings to ensure temperature...
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2015-01-23 Jim ProcterMerge branch 'feature_29/JAL-1372_referenceseq' into...
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2015-01-23 Jim ProcterJAL-1541 changed assert to JUnit assert - test now...
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2015-01-23 Jim ProcterJAL-1551 formatting
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2015-01-23 Jim ProcterJAL-1286 don't print an exception if a non-gzip stream...
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2015-01-23 Jim ProcterJAL-1551 crlf changes
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2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method
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2015-01-23 Jim ProcterJAL-969 drop the hiddenColumns flag in favour of checking...
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2015-01-23 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referenceseq
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2015-01-23 Jim ProcterJAL-1628 tweak signature of core annotation printer...
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2015-01-23 Jim ProcterJAL-1551 formatting/imports
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2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples...
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2015-01-23 Jim ProcterJAL-1551 source code formatting
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2015-01-23 Jim ProcterJAL-969 javadoc and mark interface overrides for clarity
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2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour...
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2015-01-22 Jim ProcterJAL-1372 JAL-1169 documentation for new commands HIDE_INSERT...
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2015-01-21 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referenceseq
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2015-01-21 Jim Proctertidy up class files that shouldn't be in repo
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2015-01-20 Jim ProcterJAL-1304 revamped annotation file documentation structure...
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2015-01-18 Jim ProcterJAL-1372 i18n and tweaking set/unset representative...
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2015-01-18 Jim ProcterJAL-1628 formatting
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2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to...
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2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files...
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2015-01-18 Jim ProcterJAL-1628 formatting and javadoc
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2015-01-18 Jim ProcterJAL-1628 method to hide insertions to current sequence...
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2015-01-18 Jim ProcterJAL-1628 wrappers for common checks on ColumnSelection
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2015-01-18 Jim ProcterJAL-1628 ColumnSelection method to hide insertions...
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2015-01-18 Jim ProcterJAL-1628 new method to get a list of insertions in...
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2015-01-18 Jim Procteralways use interface rather than field access
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2015-01-18 Jim ProcterJAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence
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2015-01-09 Jim ProcterMerge branch 'JAL-1372_referenceseq' into feature_29...
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2015-01-09 Jim ProcterMerge branch 'JAL-1483_29dev' into develop
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2015-01-09 Jim ProcterJAL-1483 formatting
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2015-01-09 Jim ProcterJAL-1483 remember to look at base dataset sequence...
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2015-01-08 Jim ProcterMerge branch 'JAL-1483_29dev' into develop
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2015-01-07 Jim ProcterMerge branch 'develop' into JAL-1483_29dev
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2015-01-07 Jim ProcterJAL-1483 patches to make test case pass: hamming distance...
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2015-01-07 Jim ProcterJAL-1483 basic test of sequence similarity score model...
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2015-01-07 Jim ProcterJAL-1483 source formatting
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2015-01-07 Jim ProcterJAL-1483 refactor NJTree constructor to allow preconfigured...
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2015-01-07 Jim ProcterJAL-1483 register feature similarity model
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2015-01-07 Jim ProcterJAL-1483 null features not displayed
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2015-01-07 Jim ProcterJAL-1483 check dataset for features if none found on...
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2015-01-07 Jim ProcterJAL-1483 organise imports
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2015-01-07 Jim ProcterJAL-1483 making type visible also adds it to registry
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2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
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2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-03 Jim ProcterJAL-1517 update applet authors list
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2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-03 Jim ProcterJAL-1517 disable desktop 'take snapshot' menu item...
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2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-03 Jim ProcterJAL-1517 dropped jnlp file in help documentation in...
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2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-03 Jim ProcterJAL-1517 updated library licensing info
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2014-12-03 Jim ProcterJAL-1517 release notes
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2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1517 typo
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2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1517 TOC items must be on one line for help2Website
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2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1602 tweak VM inclusion options
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2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1517 documentation for 2.8.2 release
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2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1602 typo in jsonsimple jar
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2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1602 add missing jars to install
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2014-12-01 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_Branch
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2014-12-01 Jim ProcterJAL-1602 upgrade to InstallAnywhere 2014 J17 runtimes
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2014-12-01 Jim ProcterJAL-1199 JAL-1569 incremental patch allow non-standard...
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2014-12-01 Jim ProcterJAL-1517 updating author list
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2014-12-01 Jim ProcterJAL-1517 updating authors list
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2014-12-01 Jim ProcterJAL-795 hack to ignore black colour in annotation element.
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2014-12-01 Jim ProcterJAL-1601 ignore the JABA Jpred client in Jalview 2...
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2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into...
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2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into...
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2014-12-01 Jim Procterfile for JAL-1268 jalview.io.Jalview2xmlTests.testTCoffeeScores
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2014-11-28 Jim ProcterMerge branch 'JAL-1517_release282' into develop
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2014-11-28 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-11-28 Jim ProcterJAL-1517 first stab at release notes... lots of documentatio...
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2014-11-28 Jim ProcterJAL-1522 output installation type to stdout
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2014-11-28 Jim ProcterJAL-1522 remove build/deployment details imported from...
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2014-11-28 Jim ProcterJAL-1517 formatting
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