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JAL-2189 formatting and release notes
2016-10-05 Jim ProcterJAL-2189 formatting and release notes
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2016-10-05 Jim ProcterJAL-2189 license header
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2016-10-05 Jim ProcterJAL-2189 apply license
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2016-10-05 Jim ProcterJAL-2189 format help
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2016-10-05 Jim ProcterJAL-2189 format tests
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2016-10-05 Jim ProcterJAL-2189 formatting and GPL
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2016-10-05 Jim ProcterJAL-2189 source formatting
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2016-10-05 Jim ProcterRevert "JAL-2245 Castor mapping and code changes for...
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2016-10-05 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2016-10-05 Jim ProcterJAL-2189 release notes/whats new
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2016-10-05 Jim ProcterJAL-2189 JAL-2152 Chimera 1.11.1 minimum version requirement
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2016-10-04 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into develop
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2016-10-04 Jim ProcterJAL-2189 release notes
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2016-10-04 Jim ProcterJAL-2189 link to feature sorting documentation
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2016-10-04 Jim ProcterJAL-2189 JAL-2005 mention alignment order preservation...
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2016-10-04 Jim ProcterJAL-2189 release notes
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2016-10-04 Jim ProcterJAL-2005 JAL-599 test alignment and features for checking...
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2016-10-03 Jim ProcterJAL-2189 update RELEASE file
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2016-10-03 Jim ProcterJAL-2189 more release notes
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2016-10-03 Jim ProcterJAL-2189 ensembl sequence fetching, locus view and...
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2016-10-03 Jim ProcterJAL-2189 release notes
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2016-10-03 Jim ProcterJAL-2210 use addDBRef to ensure normalisation (just...
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2016-10-03 Jim ProcterJAL-2210 need to add both transcript and product, and...
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2016-10-03 Jim ProcterJAL-2210 JAL-2232 remove version number from ENACDS...
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2016-10-03 Jim ProcterJAL-2210 hack to remove EMBL from Protein crossrefs...
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2016-10-03 Jim ProcterJAL-2210 explicit ‘doNotAdd’ list to prevent sequences...
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2016-10-02 Jim ProcterJAL-2210 first pass at attempting to fix CrossRef tests...
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2016-10-02 Jim ProcterJAL-2210 remove ENSEMBL from protein DB list:
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2016-10-02 Jim ProcterJAL-2210 two pass attempt to import retrieved sequences...
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2016-10-02 Jim ProcterJAL-2210 try to merge all sequences referenced by a...
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2016-10-02 Jim ProcterJAL-2210 comments
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2016-10-02 Jim ProcterJAL-2210 discover candidate dataset sequences for an...
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2016-10-02 Jim ProcterJAL-2079 pass server name when reporting FTS ‘warning...
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2016-10-01 Jim ProcterMerge branch 'develop' into bug/JAL-2210_ensembl_uniprot_pri...
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2016-10-01 Jim ProcterJAL-2210 factored out code for processing cross-referenced...
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2016-10-01 Jim ProcterJAL-2210 refactor code to remove from a list of dbrefs...
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2016-09-30 Jim ProcterJAL-2210 some DBRef xref/ref correspondences may add...
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2016-09-30 Jim ProcterJAL-2210 CrossRef.findInDataset should search for presence...
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2016-09-30 Jim ProcterJAL-2210 add uniprot+mapping between ENST and ENSP...
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2016-09-30 Jim ProcterJAL-2238 release notes
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2016-09-30 Jim ProcterJAL-2236 release notes and additional docs
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2016-09-30 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch
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2016-09-29 Jim ProcterJAL-2089 fix broken help link
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2016-09-29 Jim ProcterMerge branch 'patch/JAL-2236_filtercolumns_seqassoc...
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2016-09-29 Jim ProcterJAL-2236 include associated sequence id for annotation...
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2016-09-29 Jim ProcterMerge branch 'patch/JAL-2238_tcoffee_subgroups' into...
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2016-09-29 Jim ProcterJAL-2236 fix: bail if no context available for subgroup
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2016-09-28 Jim ProcterJAL-2210 patch network test for additional refs
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2016-09-28 Jim ProcterJAL-2210 JAL-2235 fix deriveSequence test for tightened...
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2016-09-28 Jim ProcterJAL-1270 read test props before manipulating config...
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2016-09-28 Jim ProcterJAL-2235 patch tests where self-reference was used...
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2016-09-28 Jim ProcterJAL-2235 implicit test to check that exception is raised...
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2016-09-28 Jim ProcterJAL-2235 raise exceptions if self reference or reference...
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2016-09-28 Jim ProcterJAL-2210 patch for when no DBRefs on sequence
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2016-09-28 Jim ProcterJAL-2210 instrument setDBRefs to call ensurePrimaries
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2016-09-28 Jim ProcterJAL-2210 JAL-2232 check response code before attempting...
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2016-09-28 Jim ProcterJAL-2232 extract EMBLCDS refs from EMBL refs on Uniprot...
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2016-09-27 Jim ProcterMerge branch 'develop' into bug/JAL-2210_ensembl_uniprot_pri...
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2016-09-27 Jim ProcterJAL-2210 formatting
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2016-09-27 Jim ProcterJAL-2210 report stack trace for unexpected exceptions
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2016-09-27 Jim ProcterJAL-2210 promote direct dbrefs from verified sources...
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2016-09-27 Jim ProcterJAL-2210 resolve todo - addDBRef adds to dataset sequence...
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2016-09-26 Jim ProcterJAL-2148 release notes
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2016-09-24 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into develop
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2016-09-24 Jim ProcterJAL-1919 whats new link
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2016-09-23 Jim ProcterJAL-1957 JAL-1479 tweak SIFTS mappings documentation...
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2016-09-23 Jim ProcterJAL-1957 JAL-1479 mention SIFTS mappings in PDB Structure...
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2016-09-23 Jim ProcterJAL-1957 release notes
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2016-09-23 Jim ProcterJAL-1962 release notes
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2016-09-23 Jim ProcterJAL-2214 fix docs (consistent and correct base pair...
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2016-09-23 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch
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2016-09-23 Jim ProcterJAL-2189 JAL-1479 JAL-1491 JAL-1827 release notes
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2016-09-22 Jim ProcterJAL-2275 release notes
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2016-09-22 Jim ProcterJAL-2151 release notes
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2016-09-22 Jim ProcterJAL-2168 -news release notes
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2016-09-22 Jim ProcterJAL-1557 release notes
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2016-09-22 Jim ProcterJAL-2189 bumped date to 27th September \o/
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2016-09-22 Jim ProcterJAL-2189 JAL-1812 JAL-2068 new groovy docs (new files...
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2016-09-22 Jim ProcterJAL-2189 JAL-2092 popup show/hide cols with feature...
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2016-09-22 Jim ProcterJAL-2189 JAL-2077 note about CTRL-Click to right click...
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2016-09-22 Jim ProcterJAL-2189 tidy up docs
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2016-09-22 Jim ProcterJAL-1812 JAL-1868 release notes
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2016-09-22 Jim ProcterJAL-2189 JAL-1812 JAL-2068 new groovy doc section and...
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2016-09-21 Jim ProcterJAL-2189 JAL-2171 JAL-2214 JAL-1841 JAL-2215 release...
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2016-09-21 Jim ProcterJAL-1841 JAL-2214 updated RNA Structure Consensus documentation
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2016-09-21 Jim ProcterJAL-2214 JAL-1841 compute canonical, canonicalAndWobble...
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2016-09-21 Jim ProcterJAL-1841 JAL-2215 add the ‘ignore gaps’ structure consensus...
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2016-09-21 Jim ProcterJAL-2214 test for strict Watson-Crick pairing
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2016-09-21 Jim ProcterJAL-2215 fix - trigger alignment update when ‘ignore...
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2016-09-21 Jim ProcterJAL-2189 reworked annotation docs
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2016-09-21 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch
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2016-09-19 Jim ProcterJAL-1577 release notes
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2016-09-19 Jim ProcterJAL-2027 releasenotes
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2016-09-19 Jim ProcterJAL-1563 release notes
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2016-09-19 Jim ProcterJAL-2189 JAL-2002 revised the structure chooser documentation
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2016-09-19 Jim ProcterJAL-2189 Release notes for JAL-2079 JAL-2084 JAL-2054...
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2016-09-19 Jim ProcterJAL-2189 JAL-1369 JAL-192 expand referenceseq documentation
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2016-09-19 Jim ProcterJAL-2189 what’s new - ensembl, new structure stuff...
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2016-09-19 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2016-09-19 Jim ProcterJAL-2175 JAL-2170 fix sense for assertEquals
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