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2017-02-28	kiramt	JAL-2388 First move of endRes etc out of AlignmentViewport...	commit \| commitdiff \| tree
2017-02-28	kiramt	JAL-2426 Checks on conservation thread in case we are...	commit \| commitdiff \| tree
2017-02-27	kiramt	JAL-2388 Make startRes,startSeq,endRes,endSeq private...	commit \| commitdiff \| tree
2017-02-27	kiramt	JAL-2388 Minor refactoring	commit \| commitdiff \| tree
2017-02-27	kiramt	JAL-2388 Unit tests take 2	commit \| commitdiff \| tree
2017-02-23	kiramt	JAL-2388 Unit tests for columns, take 1	commit \| commitdiff \| tree
2017-02-23	kiramt	JAL-2388 Unit tests in progress	commit \| commitdiff \| tree
2017-02-21	kiramt	Merge branch 'bug/JAL-2421overviewboxflicker' into	commit \| commitdiff \| tree
2017-02-21	kiramt	Merge branch 'develop' into features/JAL-2388OverviewWindow	commit \| commitdiff \| tree
2017-02-21	kiramt	JAL-2421 Unit test	commit \| commitdiff \| tree
2017-02-17	kiramt	JAL-2388 Incomplete unit tests	commit \| commitdiff \| tree
2017-02-17	kiramt	JAL-2421 incomplete unit test	commit \| commitdiff \| tree
2017-02-17	kiramt	JAL-2421 Fix to alignment panel scroll values, and...	commit \| commitdiff \| tree
2017-02-14	kiramt	JAL-2388 Removed unnecessary CommandListener interface...	commit \| commitdiff \| tree
2017-02-09	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-02-09	kiramt	JAL-2388 Initial refactor of OverviewPanel	commit \| commitdiff \| tree
2017-02-08	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-01-27	kiramt	JAL-2366 Removed unneeded setEnabled calls	commit \| commitdiff \| tree
2017-01-26	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-01-26	kiramt	JAL-2316 Updated to use identifiers jalview service	commit \| commitdiff \| tree
2017-01-11	kiramt	JAL-2316 Spanish message translations	commit \| commitdiff \| tree
2017-01-10	kiramt	JAL-2316 Separate label/db name in UrlProviders. Unit...	commit \| commitdiff \| tree
2017-01-09	kiramt	JAL-2316 Prevent applet from loading null links into...	commit \| commitdiff \| tree
2017-01-09	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2016-12-16	kiramt	JAL-2316 Added database name column to URL links table...	commit \| commitdiff \| tree
2016-12-15	kiramt	JAL-2316 Changes following review.	commit \| commitdiff \| tree
2016-12-13	kiramt	Merge branch 'develop' into features/JAL-2316	commit \| commitdiff \| tree
2016-12-13	kiramt	JAL-2316 Documentation update	commit \| commitdiff \| tree
2016-12-12	kiramt	JAL-2316 Added GUI checks for duplicate link ids	commit \| commitdiff \| tree
2016-12-12	kiramt	JAL-2316 Unit test update to UrlLinkTableModel and...	commit \| commitdiff \| tree
2016-12-12	kiramt	JAL-2316 Added jalview.urls.* packages	commit \| commitdiff \| tree
2016-12-12	kiramt	JAL-2316 Missed change from previous checkin	commit \| commitdiff \| tree
2016-12-12	kiramt	JAL-2316 More unit testing and adjustments	commit \| commitdiff \| tree
2016-12-12	kiramt	JAL-2316 Unit tests	commit \| commitdiff \| tree
2016-12-09	kiramt	JAL-2316 Unit test updates and associated minor changes...	commit \| commitdiff \| tree
2016-12-09	kiramt	JAL-2316 Unit testing, relax constraint that default...	commit \| commitdiff \| tree
2016-12-07	kiramt	JAL-2316 Unit test for download client	commit \| commitdiff \| tree
2016-12-07	kiramt	JAL-2316 Restructure identifiers.org download	commit \| commitdiff \| tree
2016-12-05	kiramt	JAL-2316 Added UrlProvider factories. Tidied up labelling.	commit \| commitdiff \| tree
2016-12-05	kiramt	JAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI...	commit \| commitdiff \| tree
2016-12-02	kiramt	JAL-2316 GUI to allow to insert tokens into new URL...	commit \| commitdiff \| tree
2016-12-02	kiramt	JAL-2316 GUI updates to Connections tab in Preferences...	commit \| commitdiff \| tree
2016-11-18	kiramt	JAL-2316 First pass identifiers.org downloading working	commit \| commitdiff \| tree
2016-11-16	kiramt	Merge remote-tracking branch 'origin/bug/JAL-2282'...	commit \| commitdiff \| tree
2016-11-16	kiramt	JAL-2282 Updated docs with information about when warning...	commit \| commitdiff \| tree
2016-11-16	kiramt	JAL-2316 Unit test for IdentifiersUrlProvider	commit \| commitdiff \| tree
2016-11-16	kiramt	JAL-2316 Setting up IdentifiersUrlProvider	commit \| commitdiff \| tree
2016-11-16	kiramt	JAL-2316 Added unit tests for CustomUrlProvider	commit \| commitdiff \| tree
2016-11-15	kiramt	JAL-2316 Moved url providers into own package	commit \| commitdiff \| tree
2016-11-15	kiramt	JAL-2316 Refactoring of functionality to provide urls...	commit \| commitdiff \| tree
2016-11-14	kiramt	Url links changes - incomplete checkin as battery low	commit \| commitdiff \| tree
2016-11-08	kiramt	JAL-2309 Made test timeout slightly longer	commit \| commitdiff \| tree
2016-11-08	kiramt	JAL-2309 Adjusted timeout on headless tests	commit \| commitdiff \| tree
2016-11-04	kiramt	Merge remote-tracking branch 'origin/bug/JAL-2282'...	commit \| commitdiff \| tree
2016-11-04	kiramt	JAL-2315 Clear sequenceURLLinks if all sequence links...	commit \| commitdiff \| tree
2016-11-04	kiramt	Merge remote-tracking branch 'origin/bug/JAL-2282'...	commit \| commitdiff \| tree
2016-11-04	kiramt	JAL-2282 Better check for existing url links	commit \| commitdiff \| tree
2016-11-04	kiramt	JAL-2282 Remove Cache dependency from applet	commit \| commitdiff \| tree
2016-11-04	kiramt	JAL-2282 Message box stays on top at Jalview open;...	commit \| commitdiff \| tree
2016-11-03	kiramt	JAL-2282 Link menu disabled if there are no valid links	commit \| commitdiff \| tree
2016-11-03	kiramt	JAL-2282 Updated warn.url_must_contain	commit \| commitdiff \| tree
2016-11-03	kiramt	JAL-2282 If checkbox on warning dialog is unclicked...	commit \| commitdiff \| tree
2016-11-03	kiramt	JAL-2281 Back out unit test update, as Mungo already...	commit \| commitdiff \| tree
2016-11-03	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2016-11-03	kiramt	JAL-2308 Fixed hiddenColsTest	commit \| commitdiff \| tree
2016-11-03	kiramt	JAL-2281 Minor unit test addition	commit \| commitdiff \| tree
2016-11-02	kiramt	Merge remote-tracking branch 'origin/bug/JAL-2282'...	commit \| commitdiff \| tree
2016-11-02	kiramt	JAL-2281 Unit test updates	commit \| commitdiff \| tree
2016-11-02	kiramt	Merge remote-tracking branch 'origin/bug/JAL-2282'...	commit \| commitdiff \| tree
2016-11-02	kiramt	JAL-2281 Use DBRefs.selectRefs to uppercase URL link...	commit \| commitdiff \| tree
2016-11-02	kiramt	JAL-2282 Refactor applet too	commit \| commitdiff \| tree
2016-11-02	kiramt	JAL-2282 Updated and checked messages, English and...	commit \| commitdiff \| tree
2016-11-02	kiramt	JAL-2282 Updated help documentation	commit \| commitdiff \| tree
2016-11-02	kiramt	JAL-2282 Code tidy	commit \| commitdiff \| tree
2016-11-02	kiramt	JAL-2282 Renamed internal use of sequence id / db accession for	commit \| commitdiff \| tree
2016-11-02	kiramt	JAL-2282 URLLink unit tests updated	commit \| commitdiff \| tree
2016-11-01	kiramt	JAL-2282 Refactor SequenceAnnotationReport to use refactored...	commit \| commitdiff \| tree
2016-11-01	kiramt	JAL-2282 Merge	commit \| commitdiff \| tree
2016-11-01	kiramt	JAL-2282 Changed DB accession id token to $DB_ACCESSION...	commit \| commitdiff \| tree
2016-11-01	kiramt	JAL-2282 Refactored URL link creation into UrlLink	commit \| commitdiff \| tree
2016-11-01	kiramt	JAL-2282 Removed unexpected ; from code	commit \| commitdiff \| tree
2016-11-01	kiramt	JAL-2282 Force double-clicking to use sequence_id cases...	commit \| commitdiff \| tree
2016-10-31	kiramt	Force double-clicking to use sequence_id cases and...	commit \| commitdiff \| tree
2016-10-31	kiramt	Updated messages.	commit \| commitdiff \| tree
2016-10-31	kiramt	Use ACCESSION_ID for database accession id, and SEQUENCE_ID...	commit \| commitdiff \| tree
2016-10-24	kiramt	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-10-24	kiramt	Unit tests for UrlLink	commit \| commitdiff \| tree
2016-10-24	kiramt	Fixed dialog box messages in English and Spanish. Adjustment...	commit \| commitdiff \| tree
2016-10-24	kiramt	Correct Preferences to check for SEQUENCE_NAME as well...	commit \| commitdiff \| tree
2016-10-24	kiramt	Code tidy up. Unit test passes.	commit \| commitdiff \| tree
2016-10-22	kiramt	Working links menu	commit \| commitdiff \| tree
2016-10-21	kiramt	Factored URL Link constants out into UrlConstants file.	commit \| commitdiff \| tree
2016-10-21	kiramt	Created (failing) unit test for addFeatureLinks	commit \| commitdiff \| tree
2016-10-17	kiramt	Merge remote-tracking branch 'origin/bug/JAL-1552dragndropta...	commit \| commitdiff \| tree
2016-10-17	kiramt	acceptDrop call added before getTransferable in alignment...	commit \| commitdiff \| tree
2016-10-17	kiramt	Re-attempt to fix JAL-1552 by removing extra calls...	commit \| commitdiff \| tree
2016-10-11	kiramt	JAL-1552 added acceptDrop call before getTransferable...	commit \| commitdiff \| tree

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