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2017-07-06	gmungoc	JAL-147 unit test for hide/show sequences update ViewportRanges	commit \| commitdiff \| tree
2017-07-06	gmungoc	JAL-2605 ensure correct scale width calculation	commit \| commitdiff \| tree
2017-07-05	gmungoc	JAL-147 don't update overview for column selection...	commit \| commitdiff \| tree
2017-07-05	gmungoc	JAL-147 additions to unit test, check for negative...	commit \| commitdiff \| tree
2017-07-05	gmungoc	JAL-147 prevent overview box move up over hidden first...	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 revised update of startSeq, endSeq on unhide...	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 unit tests added, unused setEndRes removed	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 corrected update of ViewportRanges for show...	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 update ViewportRanges height after show/hide...	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 remove redundant calls to update overview panel	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-2608 tidy up OverviewPanel when closed	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 call method that sets visible width when drawing...	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 extract local variable for ease of debugging	commit \| commitdiff \| tree
2017-07-03	gmungoc	Merge branch 'develop' into bug/JAL-147scrollWrappedView	commit \| commitdiff \| tree
2017-07-03	gmungoc	JAL-147 correct width out-by-one drawing ids	commit \| commitdiff \| tree
2017-07-03	gmungoc	JAL-147 don't scroll Overview box outside panel dimensions	commit \| commitdiff \| tree
2017-07-03	gmungoc	JAL-147 ViewportRanges calculate wrapped vertical scroll...	commit \| commitdiff \| tree
2017-07-03	gmungoc	JAL-147 don't draw ScalePanel when in wrapped mode	commit \| commitdiff \| tree
2017-07-03	gmungoc	JAL-2034 don't refresh Overview for selection in id...	commit \| commitdiff \| tree
2017-06-30	gmungoc	JAL-2602 unit test added	commit \| commitdiff \| tree
2017-06-30	gmungoc	JAL-147 don't page up above origin, repaint ids for...	commit \| commitdiff \| tree
2017-06-30	gmungoc	Merge branch 'bug/JAL-2597' into develop	commit \| commitdiff \| tree
2017-06-30	gmungoc	JAL-2602 pulled up identical methods to base class	commit \| commitdiff \| tree
2017-06-30	gmungoc	JAL-2602 same fix for applet	commit \| commitdiff \| tree
2017-06-29	gmungoc	JAL-147 improved wrapped scrolling (including Overview...	commit \| commitdiff \| tree
2017-06-29	gmungoc	JAL-2605 exclude left/right scale in sequence column...	commit \| commitdiff \| tree
2017-06-28	gmungoc	Merge branch 'bug/JAL-2600resizeflicker' into develop	commit \| commitdiff \| tree
2017-06-27	gmungoc	JAL-2602 check for null or empty description when copying...	commit \| commitdiff \| tree
2017-06-15	gmungoc	JAL-2563 test updated for fix	commit \| commitdiff \| tree
2017-06-15	gmungoc	Merge branch 'bug/JAL-2386groupConservationColouring...	commit \| commitdiff \| tree
2017-06-15	gmungoc	JAL-2418 typos	commit \| commitdiff \| tree
2017-06-15	gmungoc	Merge branch 'bug/JAL-2589gapColour' into develop	commit \| commitdiff \| tree
2017-06-12	gmungoc	JAL-2577 mirror select/hide by annotation in split...	commit \| commitdiff \| tree
2017-06-12	gmungoc	JAL-2577 mirror hide/select columns by annotation across...	commit \| commitdiff \| tree
2017-06-09	gmungoc	JAL-2589 render colour scheme gap colour in overview	commit \| commitdiff \| tree
2017-06-09	gmungoc	JAL-2594 avoid stack trace creating feature on gapped...	commit \| commitdiff \| tree
2017-06-08	gmungoc	JAL-2386 JAL-2570 use ResidueShader copy constructor...	commit \| commitdiff \| tree
2017-06-07	gmungoc	JAL-2386 ensure group conservation shading is applied...	commit \| commitdiff \| tree
2017-06-06	gmungoc	JAL-2589 correct colour for Gap in Score and User Defined...	commit \| commitdiff \| tree
2017-05-31	gmungoc	JAL-2547 handle contact features 'around' a gap correctly	commit \| commitdiff \| tree
2017-05-30	gmungoc	JAL-2547 tooltip/AmendFeatures on gap straddled by...	commit \| commitdiff \| tree
2017-05-30	gmungoc	JAL-2570 don't zap group colour scheme when mapping...	commit \| commitdiff \| tree
2017-05-23	gmungoc	JAL-2547 don't show features in tooltip over a gap	commit \| commitdiff \| tree
2017-05-22	gmungoc	JAL-2504 update the right feature colour when creating...	commit \| commitdiff \| tree
2017-05-22	gmungoc	JAL-2544 unit tests for sort by feature score	commit \| commitdiff \| tree
2017-05-22	gmungoc	JAL-2544 check feature overlaps selection region	commit \| commitdiff \| tree
2017-05-19	gmungoc	JAL-2526 removed redundant call to Sequence.findPosition()	commit \| commitdiff \| tree
2017-05-17	gmungoc	JAL-2504 use (and update) defaults for new feature...	commit \| commitdiff \| tree
2017-05-17	gmungoc	Merge branch 'develop' into bug/JAL-2510amendFeatures	commit \| commitdiff \| tree
2017-05-16	gmungoc	JAL-2517 restore complex colour scheme on Cancel in...	commit \| commitdiff \| tree
2017-05-16	gmungoc	JAL-2403 simplify instantiation / configuration of...	commit \| commitdiff \| tree
2017-05-15	gmungoc	JAL-2532 new feature types and colour changes from...	commit \| commitdiff \| tree
2017-05-09	gmungoc	JAL-1632 correct i18n and NPE	commit \| commitdiff \| tree
2017-05-08	gmungoc	JAL-1933 Spanish tooltips for annotation	commit \| commitdiff \| tree
2017-05-08	gmungoc	JAL-1632 i18n for warning messages	commit \| commitdiff \| tree
2017-05-08	gmungoc	Merge remote-tracking branch 'origin/bug/JAL-2515'...	commit \| commitdiff \| tree
2017-05-05	gmungoc	Merge branch 'develop' into features/JAL-2435splitScreenFont	commit \| commitdiff \| tree
2017-05-05	gmungoc	JAL-964 JAL-2510 update Feature Settings from Amend...	commit \| commitdiff \| tree
2017-05-04	gmungoc	JAL-2506 allow graduated colour as default in new Sequence...	commit \| commitdiff \| tree
2017-05-04	gmungoc	JAL-2510 ensure modified feature type is displayed	commit \| commitdiff \| tree
2017-05-04	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2017-05-04	gmungoc	JAL-2504 allow feature type to be specified for Create...	commit \| commitdiff \| tree
2017-05-03	gmungoc	JAL-2246 basic sanity test of fetching example accessions	commit \| commitdiff \| tree
2017-05-03	gmungoc	JAL-2246 test a Uniprot fetch	commit \| commitdiff \| tree
2017-05-03	gmungoc	JAL-2105 Ensembl REST now at 5.0	commit \| commitdiff \| tree
2017-05-03	gmungoc	JAL-2485 JAL-2246 test Uniprot FTS summary	commit \| commitdiff \| tree
2017-05-02	gmungoc	JAL-1933 Spanish for Occupancy	commit \| commitdiff \| tree
2017-05-02	gmungoc	JAL-2447 EXPERIMENTAL preference (option in Tools menu)	commit \| commitdiff \| tree
2017-05-02	gmungoc	JAL-2499 inlined two 1-line methods	commit \| commitdiff \| tree
2017-05-02	gmungoc	JAL-2499 JAL-2403 push 'configure for view' inside...	commit \| commitdiff \| tree
2017-05-02	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	commit \| commitdiff \| tree
2017-05-01	gmungoc	JAL-2489 JAL-2371 reinstate calls to	commit \| commitdiff \| tree
2017-05-01	gmungoc	Merge remote-tracking branch	commit \| commitdiff \| tree
2017-04-28	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	commit \| commitdiff \| tree
2017-04-24	gmungoc	JAL-2487 remove redundant refreshGUI to minimise threading...	commit \| commitdiff \| tree
2017-04-24	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	commit \| commitdiff \| tree
2017-04-24	gmungoc	JAL-2424 final contig now an inclusive range	commit \| commitdiff \| tree
2017-04-21	gmungoc	JAL-2295 Spanish translations for superposition / errors	commit \| commitdiff \| tree
2017-04-21	gmungoc	JAL-2295 Spanish translations added	commit \| commitdiff \| tree
2017-04-21	gmungoc	JAL-2361 Spanish text added	commit \| commitdiff \| tree
2017-04-21	gmungoc	JAL-2423 tweak tree panel title, add Spanish text	commit \| commitdiff \| tree
2017-04-21	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	commit \| commitdiff \| tree
2017-04-19	gmungoc	JAL-2435 mirror font changes with middle mouse drag	commit \| commitdiff \| tree
2017-04-19	gmungoc	Merge branch 'develop' into features/JAL-2435splitScreenFont	commit \| commitdiff \| tree
2017-04-17	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	commit \| commitdiff \| tree
2017-04-12	gmungoc	JAL-2361 tweak layout of warning message	commit \| commitdiff \| tree
2017-04-12	gmungoc	JAL-1632 removed check for aligned sequences for Tree...	commit \| commitdiff \| tree
2017-04-12	gmungoc	JAL-1632 remove unused check for sequences aligned	commit \| commitdiff \| tree
2017-04-12	gmungoc	JAL-2403 ensure array held in Matrix is immutable	commit \| commitdiff \| tree
2017-04-12	gmungoc	JAL-2403 public static methods to convert distance...	commit \| commitdiff \| tree
2017-04-12	gmungoc	JAL-1632 one PCA/Tree per panel, closed when panel...	commit \| commitdiff \| tree
2017-04-11	gmungoc	JAL-2403 improved ScoreModelI hierarchy as per Kira...	commit \| commitdiff \| tree
2017-04-11	gmungoc	JAL-2428 Javadoc	commit \| commitdiff \| tree
2017-04-11	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	commit \| commitdiff \| tree
2017-04-10	gmungoc	JAL-2403 unit tests for PCA.computeSimilarity, signature...	commit \| commitdiff \| tree
2017-04-10	gmungoc	JAL-2403 removed remaining jvCalcMode references from PCA	commit \| commitdiff \| tree
2017-04-10	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	commit \| commitdiff \| tree
2017-04-10	gmungoc	JAL-2416 test updated for reinstatement of '*' row...	commit \| commitdiff \| tree
2017-04-10	gmungoc	JAL-2361 option to save on OK of changed named colour...	commit \| commitdiff \| tree
2017-04-09	gmungoc	JAL-2393 remove unused commented code	commit \| commitdiff \| tree
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