| 2015-02-10 |
gmungoc | JAL-1264 unit tests fixed (have to explicit set annotation...
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commit | commitdiff | tree |
| 2015-02-09 |
gmungoc | Merge remote-tracking branch 'origin/develop' into
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commit | commitdiff | tree |
| 2015-02-06 |
gmungoc | JAL-845 further code/tests/refactoring
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commit | commitdiff | tree |
| 2015-02-03 |
gmungoc | comment only
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commit | commitdiff | tree |
| 2015-02-03 |
gmungoc | JAL-845 column mapping speed-up
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commit | commitdiff | tree |
| 2015-02-03 |
gmungoc | JAL-845 SplitFrame key bindings delegation to AlignFrame...
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commit | commitdiff | tree |
| 2015-02-03 |
gmungoc | JAL-845 preparation for awareness of AlignFrame in...
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commit | commitdiff | tree |
| 2015-02-03 |
gmungoc | JAL-845 redundant 'map to self' removed from buildSearchResults
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commit | commitdiff | tree |
| 2015-02-03 |
gmungoc | Comments added
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commit | commitdiff | tree |
| 2015-02-03 |
gmungoc | JAL-845 code/refactoring/tests related to linking DNA...
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commit | commitdiff | tree |
| 2015-01-30 |
gmungoc | JAL-845 linked protein/dna 'slave' further PoC functionality
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commit | commitdiff | tree |
| 2015-01-27 |
gmungoc | JAL-1588 new class renamed
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commit | commitdiff | tree |
| 2015-01-26 |
gmungoc | Merge branch 'features/JAL-1588saveChimeraSession'...
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commit | commitdiff | tree |
| 2015-01-26 |
gmungoc | JAL-1588 restoring saved Chimera session(s)
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commit | commitdiff | tree |
| 2015-01-23 |
gmungoc | JAL-1588 first working (?) restore of Chimera session...
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commit | commitdiff | tree |
| 2015-01-23 |
gmungoc | JAL-1619 javadoc/tidy
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commit | commitdiff | tree |
| 2015-01-23 |
gmungoc | JAL-1635 show warning if less than 3 columns selected...
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commit | commitdiff | tree |
| 2015-01-23 |
gmungoc | Random DNA generator tarted up
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commit | commitdiff | tree |
| 2015-01-22 |
gmungoc | JAL-1619 refactoring / tests to support 'align linked...
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commit | commitdiff | tree |
| 2015-01-20 |
gmungoc | JAL-1619 test that reordering cDNA does not change...
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commit | commitdiff | tree |
| 2015-01-20 |
gmungoc | JAL-1619 tweaked for better reusability
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commit | commitdiff | tree |
| 2015-01-19 |
gmungoc | JAL-1619 refactored cDNA translation; modified codon...
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commit | commitdiff | tree |
| 2015-01-19 |
gmungoc | JAL-1636 typed collections now in ResidueProperties
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commit | commitdiff | tree |
| 2015-01-19 |
gmungoc | JAL-1636 fix for mouseover of 'X' in translated protein
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commit | commitdiff | tree |
| 2015-01-18 |
gmungoc | JAL-1619 refactoring wip
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commit | commitdiff | tree |
| 2015-01-17 |
gmungoc | JAL-1619 further refactoring
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commit | commitdiff | tree |
| 2015-01-16 |
gmungoc | JAL-1619 refactoring in progress for Dna translation
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commit | commitdiff | tree |
| 2015-01-14 |
gmungoc | JAL-1619 AlignedCodonFrame in new alignment should...
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commit | commitdiff | tree |
| 2015-01-14 |
gmungoc | JAL-1619 modified repaint after 'Align As' action
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commit | commitdiff | tree |
| 2015-01-14 |
gmungoc | JAL-1619 Javadoc
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commit | commitdiff | tree |
| 2015-01-14 |
gmungoc | JAL-1629 .jar option removed from Alignment File Save...
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commit | commitdiff | tree |
| 2015-01-12 |
gmungoc | JAL-1619 load/align cDNA for protein (wip)
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commit | commitdiff | tree |
| 2015-01-09 |
gmungoc | JAL-1588 check Chimera session file still exists
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commit | commitdiff | tree |
| 2015-01-08 |
gmungoc | JAL-1588 part work save/restore of Chimera session
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commit | commitdiff | tree |
| 2015-01-07 |
gmungoc | JAL-845 TODO comment added
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commit | commitdiff | tree |
| 2015-01-07 |
gmungoc | JAL-1551 formatting applied
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commit | commitdiff | tree |
| 2015-01-07 |
gmungoc | JAL-1588 refactoring to StructureViewerBase and related
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commit | commitdiff | tree |
| 2015-01-06 |
gmungoc | JAL-1588 refactoring prior to 'save Chimera project'
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commit | commitdiff | tree |
| 2015-01-04 |
gmungoc | JAL-1619 first draft of 'linked protein and cDNA'
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commit | commitdiff | tree |
| 2014-12-28 |
gmungoc | Merge branch 'features/JAL-1596ChimeraREST' into develop
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commit | commitdiff | tree |
| 2014-12-28 |
gmungoc | JAL-845 first working linked edit protein -> cDNA
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commit | commitdiff | tree |
| 2014-12-16 |
gmungoc | JAL-1328 System.exit() removed as it aborts an entire...
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commit | commitdiff | tree |
| 2014-12-16 |
gmungoc | JAL-845 first simple unit tests added
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commit | commitdiff | tree |
| 2014-12-16 |
gmungoc | JAL-845 move main method to 'test' class (needs further...
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commit | commitdiff | tree |
| 2014-12-16 |
gmungoc | JAL-1618 feature parsing bug (and formatting)
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commit | commitdiff | tree |
| 2014-12-16 |
gmungoc | JAL-1619 refactorings: Map, StringBuilder, Override
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commit | commitdiff | tree |
| 2014-12-16 |
gmungoc | JAL-845 formatting only (block parentheses)
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commit | commitdiff | tree |
| 2014-12-16 |
gmungoc | JAL-1619 don't copy hidden or RNA SS annotations to...
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commit | commitdiff | tree |
| 2014-12-14 |
Mungo Carstairs | JAL-1596 set HTTP 1.1 in HttpClient
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commit | commitdiff | tree |
| 2014-12-12 |
gmungoc | JAL-845 don't translate hidden annotation (plus formatting)
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commit | commitdiff | tree |
| 2014-12-09 |
gmungoc | JAL-1616 loading of datasets from XML patched
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commit | commitdiff | tree |
| 2014-12-09 |
gmungoc | JAL-1616 loading of datasets from XML patched
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commit | commitdiff | tree |
| 2014-12-05 |
gmungoc | JAL-1614 flag 'protein' removed
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commit | commitdiff | tree |
| 2014-12-05 |
gmungoc | JAL-1614 flag 'protein' removed
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commit | commitdiff | tree |
| 2014-12-05 |
gmungoc | JAL-1609 refactored colour by sequence command, now...
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commit | commitdiff | tree |
| 2014-12-05 |
gmungoc | Merge branch 'Release_2_8_2_Branch' of local repository...
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commit | commitdiff | tree |
| 2014-12-03 |
gmungoc | Merge branch 'Release_2_8_2_Branch' of https://source...
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commit | commitdiff | tree |
| 2014-12-03 |
gmungoc | JAL-1609 wip on Chimera colour by sequence
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commit | commitdiff | tree |
| 2014-12-01 |
gmungoc | JAL-429 Phylip added to help page
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commit | commitdiff | tree |
| 2014-12-01 |
gmungoc | JAL-1544 typos/formatting in help (and Phylip added)
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commit | commitdiff | tree |
| 2014-11-28 |
gmungoc | JAL-1610 check reference annotations against alignment...
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commit | commitdiff | tree |
| 2014-11-28 |
gmungoc | JAL-1596 first REST interface coded
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commit | commitdiff | tree |
| 2014-11-27 |
gmungoc | JAL-1603 if Chimera selected in Preferences, warn if...
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commit | commitdiff | tree |
| 2014-11-27 |
gmungoc | Merge branch 'Release_2_8_2_Branch' of https://source...
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commit | commitdiff | tree |
| 2014-11-27 |
gmungoc | Merge branch 'Release_2_8_2_Branch' of https://source...
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commit | commitdiff | tree |
| 2014-11-26 |
gmungoc | JAL-1528 NullPointer check / more informative PDB fetch...
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commit | commitdiff | tree |
| 2014-11-25 |
gmungoc | JFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
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commit | commitdiff | tree |
| 2014-11-21 |
gmungoc | JAL-1528 found and readded Colour by Chain ('rainbow...
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commit | commitdiff | tree |
| 2014-11-21 |
gmungoc | Merge branch 'Release_2_8_2_Branch' of https://source...
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commit | commitdiff | tree |
| 2014-11-19 |
gmungoc | JAL-1342 new command-line parameter -jabaws <URL>
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commit | commitdiff | tree |
| 2014-11-18 |
gmungoc | JAL-1349 rebuild Web Service menu after add/delete...
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commit | commitdiff | tree |
| 2014-11-18 |
gmungoc | JAL-1582 removing finalize() as may have unexpected...
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commit | commitdiff | tree |
| 2014-11-18 |
gmungoc | JAL-1582 quicker tooltip on service presets (and code...
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commit | commitdiff | tree |
| 2014-11-18 |
gmungoc | JAL-1349 refresh menu presets after 'create' new
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commit | commitdiff | tree |
| 2014-11-18 |
gmungoc | JAL-1580 Chimera path tooltip, removed focusListener
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commit | commitdiff | tree |
| 2014-11-18 |
gmungoc | Merge branch 'Release_2_8_2_Branch' of https://source...
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1573 unit test added to verify Help target enum...
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1581 Tooltip slimmed down, Help button added on...
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1293 hide/show sequence annotations with hide/reveal...
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1586 chimera file chooser added, validate on OK...
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1580 size parameters dialog to height of Desktop
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1528 Chimera Help doc + fixes to setting colours
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1528 new Preference CHIMERA_PATH (Preferences ...
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1528 Chimera tidy errors, focus after align, close...
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1528 bug fixes and adjustments to Chimera interface
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commit | commitdiff | tree |
| 2014-11-14 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2014-11-14 |
gmungoc | JAL-1528 Chimera Help doc + fixes to setting colours
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commit | commitdiff | tree |
| 2014-11-13 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2014-11-13 |
gmungoc | merge
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commit | commitdiff | tree |
| 2014-11-13 |
gmungoc | JAL-1528 new Preference CHIMERA_PATH (Preferences ...
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commit | commitdiff | tree |
| 2014-11-13 |
gmungoc | JAL-1528 Chimera tidy errors, focus after align, close...
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commit | commitdiff | tree |
| 2014-11-12 |
gmungoc | JAL-1528 bug fixes and adjustments to Chimera interface
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commit | commitdiff | tree |
| 2014-11-12 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2014-11-11 |
gmungoc | JAL-1527 opening a project saved with JMol should use...
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commit | commitdiff | tree |
| 2014-11-06 |
gmungoc | JAL-1152 use a proper RadioButton not a faked one
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commit | commitdiff | tree |
| 2014-11-05 |
gmungoc | JAL-674 Prefences tweaks incl help documentation for...
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commit | commitdiff | tree |
| 2014-11-05 |
gmungoc | JAL-1152 new Structure tab on Preferences for SS derivation...
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commit | commitdiff | tree |
| 2014-11-04 |
gmungoc | JAL-1152 help updates for Preferences
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commit | commitdiff | tree |
| 2014-11-04 |
gmungoc | JAL-1152 annotation sort algorithm optimisation
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commit | commitdiff | tree |
| 2014-11-03 |
gmungoc | Merge branch 'features/JAL-1152annotationSorting' of...
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commit | commitdiff | tree |
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