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2021-09-12	Jim Procter	JAL-3829 upgrade Jmol to 14.31.53, SwingJS-JSMol to...	commit \| commitdiff \| tree
2021-09-11	Jim Procter	JAL-3829 ensure tests use mocked service - proper exception...	commit \| commitdiff \| tree
2021-09-11	Jim Procter	JAL-3829 patch failing tests and todo for future	commit \| commitdiff \| tree
2021-09-10	Jim Procter	JAL-3829 provide both PDBe queries and 3D-Beacons queries...	commit \| commitdiff \| tree
2021-09-10	Jim Procter	JAL-3829 insert title for structures from PDBe	commit \| commitdiff \| tree
2021-09-10	Jim Procter	JAL-3829 update for v1.0 3d-beacons api spec	commit \| commitdiff \| tree
2021-09-10	Jim Procter	JAL-3829 point at production 3d-beacons url	commit \| commitdiff \| tree
2021-09-08	Jim Procter	JAL-3829 refactor and JAL-3391 JAL-2935 first stab...	commit \| commitdiff \| tree
2021-09-08	Jim Procter	JAL-3829 allow client-side selection of structures...	commit \| commitdiff \| tree
2021-09-08	Jim Procter	JAL-3829 JAL-3868 TODO	commit \| commitdiff \| tree
2021-09-08	Jim Procter	JAL-3829 formatting	commit \| commitdiff \| tree
2021-09-08	Jim Procter	JAL-3829 integration test verifying mock response is...	commit \| commitdiff \| tree
2021-09-06	Jim Procter	JAL-3829 work in progress - look up additional metadata...	commit \| commitdiff \| tree
2021-09-06	Jim Procter	JAL-3829 look up column in FTS data	commit \| commitdiff \| tree
2021-09-06	Jim Procter	JAL-3829 mocking for PDBFTS for related query to UniprotFTS...	commit \| commitdiff \| tree
2021-09-06	Jim Procter	JAL-3829 pull out structure chooser query source tests...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 JAL-3865 test structure chooser queries to...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 use sequence dependent constructor for structure...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 mocking for testing 3D-Beacons FTS endpoint	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3863 promote non-canonical version of dbref to...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 comments on the 3D structure chooser’s initialisati...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3865 isolate PDB and TDB clients and last query...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3863 passing test to verify a uniprot accession...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 JAL-3865 StructureChooserQuerySource implementation...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3855 don’t need to query Alphafold2 repository...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 refactored FilterOption provider to the StructureCh...	commit \| commitdiff \| tree
2021-09-02	Jim Procter	Merge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons	commit \| commitdiff \| tree
2021-09-02	Jim Procter	Merge branch 'cherry-pick/r2_11_2_JAL-3509' into develop	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3863 fix test and note about fragility	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3863 add canonical DBRefEntry flag to Jalview project	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 generalised Alphafold retrieval mechanism...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3863 mark first accession retrieved from Uniprot...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 Structure chooser specific FTS interface and...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	Merge branch 'feature/JAL-3855_ebi_alphafold_import...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 3d-beacons structure chooser logic (not yet...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 pulled out more of the FTS dependent parts...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 updated tests for 3db fetcher’s working FTS...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 proof in principle 3d-beacons sequence fetcher...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 3d-beacons has a custom alignment retrieval...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3674 Jmol seems to sometimes return a null for...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 fixed up the 3d-beacons data columns definitions...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 JAL-2176 - TODO re unused argument in FTSRestClientI	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 tidying up PDBFTSRestClient test responses...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 Javadoc for FTSColumnPreferences	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 pushed the PDBFTSClient specific code to new...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 removed unneeded attribute in FTS core	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 forgot to add in the dummy 3d-beacons db proxy	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3674 Jmol seems to sometimes return a null for...	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3855 suppress NPE when trying to retrieve SIFTS...	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3855 ALPHAFOLD database source based on the PDB...	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3855 check if an alpha fold ID and retrieve using...	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3855 check for existence of an alpha fold model...	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3855 convenience method to check a URL will return...	commit \| commitdiff \| tree
2021-06-09	Jim Procter	JAL-3840 don’t update the modal residue count for gaps	commit \| commitdiff \| tree
2021-06-09	Jim Procter	fixes JAL-3840	commit \| commitdiff \| tree
2021-06-09	Jim Procter	JAL-3840 failing test - show that addGaps overflows	commit \| commitdiff \| tree
2021-04-06	Jim Procter	JAL-3832 dummy 3d-beacons database client and code...	commit \| commitdiff \| tree
2020-11-13	Jim Procter	JAL-3757 JAL-3689 use AppletFormat.checkProtocol to...	commit \| commitdiff \| tree
2020-10-28	Jim Procter	JAL-3760 fix tests for changed behaviour	commit \| commitdiff \| tree
2020-10-28	Jim Procter	JAL-3760 refactor nucleotide proportion test to per...	commit \| commitdiff \| tree
2020-10-28	Jim Procter	Merge branch 'portforward/JAL-3765_patch_to_2112' into...	commit \| commitdiff \| tree
2020-10-28	Jim Procter	JAL-3765 fix test	commit \| commitdiff \| tree
2020-10-28	Jim Procter	fix for JAL-3765	commit \| commitdiff \| tree
2020-09-21	Jim Procter	Merge branch 'merge_review/JAL-3490_2_11_2_develop...	commit \| commitdiff \| tree
2020-09-10	Jim Procter	JAL-3746 bump release version for 2.11.2 series (currently...	commit \| commitdiff \| tree
2020-08-31	Jim Procter	JAL-3680 merged description of individual cursor key...	commit \| commitdiff \| tree
2020-08-31	Jim Procter	JAL-3732 - sequences can be moved up/down in cursor...	commit \| commitdiff \| tree
2020-08-21	Jim Procter	JAL-3615 code tidy, improve unit test	commit \| commitdiff \| tree
2020-08-17	Jim Procter	JAL-3490 don't init the combo box's history cache for...	commit \| commitdiff \| tree
2020-08-17	Jim Procter	JAL-3490 merged with 2.11.2 develop	commit \| commitdiff \| tree
2020-08-17	Jim Procter	Merge branch 'task/JAL-3597memoryLeakTest' into develop	commit \| commitdiff \| tree
2020-08-12	Jim Procter	Merge branch 'task/JAL-3608_property_set_laf_and_tests...	commit \| commitdiff \| tree
2020-08-03	Jim Procter	Merge branch 'bug/JAL-2983negativeSliderMin' into develop	commit \| commitdiff \| tree
2020-07-29	Jim Procter	JAL-3371 JAL-2983 don't modify 'extent' of slider ...	commit \| commitdiff \| tree
2020-07-28	Jim Procter	Merge branch 'feature/JAL-3615gzipXfam' into develop	commit \| commitdiff \| tree
2020-07-28	Jim Procter	JAL-3615 JAL-2656 missing import after cherrypick	commit \| commitdiff \| tree
2020-07-28	Jim Procter	JAL-2656 recognise non-HTTP URI input streams as gzipped...	commit \| commitdiff \| tree
2020-07-28	Jim Procter	JAL-2656 recognise Gzipped file input streams by their...	commit \| commitdiff \| tree
2020-07-28	Jim Procter	JAL-3615 update tests for Rfam/Pfam specific gzip endpoints	commit \| commitdiff \| tree
2020-07-27	Jim Procter	JAL-3697 show total number of features not shown	commit \| commitdiff \| tree
2020-07-27	Jim Procter	JAL-3696 log the error message from the exception to...	commit \| commitdiff \| tree
2020-07-27	Jim Procter	JAL-3695 htsjdk 2.12 -> 2.23 (library change only,...	commit \| commitdiff \| tree
2020-06-29	Jim Procter	Merge branch 'develop' of http://source.jalview.org...	commit \| commitdiff \| tree
2020-06-29	Jim Procter	JAL-3675 2.11.1.1 release notes	commit \| commitdiff \| tree
2020-06-29	Jim Procter	JAL-3493 clear search highlights when escape/deselect all	commit \| commitdiff \| tree
2020-06-29	Jim Procter	JAL-3493 failing test - creates a highlight and column...	commit \| commitdiff \| tree
2020-06-26	Jim Procter	JAL-3673 make sure font metrics are updated if dealing...	commit \| commitdiff \| tree
2020-06-26	Jim Procter	JAL-3518 fix highlighting in Jalview for selections...	commit \| commitdiff \| tree
2020-06-26	Jim Procter	JAL-3672 debug=false means no debug output	commit \| commitdiff \| tree
2020-06-26	Jim Procter	JAL-3672 more efficient when debug not enabled	commit \| commitdiff \| tree
2020-06-26	Jim Procter	JAL-3671 hardwire log4j.root logger to INFO to supress...	commit \| commitdiff \| tree
2020-05-25	Jim Procter	JAL-3626 rescue automatic configuration of JALVIEW_VERSION...	commit \| commitdiff \| tree
2020-05-24	Jim Procter	JAL-3407 redact Java 8 incompatible '<>' with anonymous...	commit \| commitdiff \| tree
2020-04-21	Jim Procter	Merge branch 'documentation/JAL-3407_2.11.1_release...	commit \| commitdiff \| tree
2020-04-21	Jim Procter	JAL-3407 add GPL license to Jalview source files	commit \| commitdiff \| tree
2020-04-21	Jim Procter	JAL-3407 release notes - JAL-247 - for auto-set-ID...	commit \| commitdiff \| tree
2020-04-21	Jim Procter	Merge branch 'documentation/JAL-3407_2.11.1_release...	commit \| commitdiff \| tree
2020-04-21	Jim Procter	JAL-3407 fix JAL-3574 - remove from known issues for...	commit \| commitdiff \| tree
2020-04-21	Jim Procter	Merge branch 'documentation/JAL-3407_2.11.1_release...	commit \| commitdiff \| tree
2020-04-21	Jim Procter	JAL-3574 JAL-3407 release notes	commit \| commitdiff \| tree
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