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JAL-281 created Nexus and PhyloXML parser classes
2017-12-19 kjvdheideJAL-281 created Nexus and PhyloXML parser classes
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2017-12-19 kjvdheideJAL-281 cleared out useless tree parser class
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2017-12-19 kjvdheideJAL-281 added phyloxml and nexus to jalview fileformats
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2017-12-18 kjvdheideJAL-1953 moved now-generic methods outside of Aptx...
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2017-12-18 kjvdheideJAL-1953 -External from all interfaces names
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2017-12-18 kjvdheideJAL-1953 attempt at changing Aptx's font to Jalview's
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2017-12-18 kjvdheideJAL-2844 cladogram no longer vertically aligned (was...
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2017-12-18 kjvdheideMerge branch 'kjvdh/features/PhylogenyViewer' of
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2017-12-18 kjvdheideJAL-2844 made null tree nodes return null wrappers...
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2017-12-18 kjvdheideMerge branch 'kjvdh/features/PhylogenyViewer' into
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2017-12-18 kjvdheideJAL-1953 redundant tree interface instantiation removed
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2017-12-15 kjvdheideJAL-2852 EPS saving code ported from TreePanel to Aptx.
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2017-12-15 kjvdheideJAL-1953 added Y coordinate getter method
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2017-12-15 kjvdheideJAL-2852 merged the EPS button adding from main branch...
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2017-12-15 kjvdheideJAL-1953 node comparing now includes checking node...
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2017-12-15 kjvdheideJAL-1953 removed deprecated interfaces
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2017-12-15 kjvdheideJAL-2852 added EPS export button to File menu
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2017-12-14 kjvdheideJAL-1953 more progress on interfaces, jalview binding...
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2017-12-12 kjvdheideJAL-2874 filtering alignment now also works when just...
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2017-12-12 kjvdheideJAL-2874 added filtering when a subtree is selected
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2017-12-12 kjvdheideMerge branch 'kjvdh/features/PhylogenyViewer' of https...
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2017-12-12 kjvdheideJAL-2877 disabled Jalview's own viewer for testing
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2017-12-11 kjvdheideJAL-2872 hide sort button in Aptx unless it's actually...
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2017-12-11 kjvdheideJAL-2877 disabled Jalview's default tree viewer when...
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2017-12-11 kjvdheideJAL-1953 fixed interface misnaming
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2017-12-11 kjvdheideJAL-1953 start on making everything interface based
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2017-12-08 kjvdheideJAL-1953 renaming of concrete implementation as well
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2017-12-08 kjvdheideJAL-2844 reallow clicks to the left of the root (groups...
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2017-12-07 kjvdheideJAL-2866 and .jar removed again
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2017-12-07 kjvdheideJAL-2866 forester .jar added to lib
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2017-12-07 kjvdheideJAL-2872 Redundant Aptx GUI menu items hidden, sorting...
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2017-12-06 kjvdheideJAL-2794 disabled branch colors on selection for now
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2017-12-06 kjvdheideJAL-2871 Added check whether configuration has been...
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2017-12-05 kjvdheideJAL-2838 Sorting from the alignment view menu now functional
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2017-12-05 kjvdheideJAL-2847 Rearranging and cleaning up of database query...
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2017-12-05 kjvdheideJAL-2794 associate leaves now iterates through ALL...
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2017-12-05 kjvdheideJAL-2847 various error popups for db querying now have...
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2017-12-05 kjvdheideJAL-2847 Strings for the various tree databases added
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2017-12-05 kjvdheideJAL-2847 if pfam id is detected in first sequence its...
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2017-12-05 kjvdheideJAL-2847 added pfam to DBRef source name lookup
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2017-12-05 kjvdheideJAL-2805 JAL-2847 JAL-281 added file path to Aptx frame...
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2017-12-05 kjvdheideJAL-2838 tree viewer interface expanded to include...
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2017-12-05 kjvdheideMerge remote-tracking branch 'origin/develop' into...
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2017-12-05 kjvdheideJAL-2838 filled in actionPerformed of the tree sort...
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2017-12-05 kjvdheideJAL-2838 Aptx frames now appear in the alignment sorting...
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2017-12-03 kjvdheideJAL-2847 start of cleaning up db loading code
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2017-12-03 kjvdheideJAL-2844 rearranging code
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2017-11-29 kjvdheideJAL-2844 check added for clicks left of root node
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2017-11-29 kjvdheideJAL-2844 entirely X coord based partitioning
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2017-11-29 kjvdheideJAL-2844 somewhat better repainting
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2017-11-29 kjvdheideJAL-2844 temporary kludge to draw a line
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2017-11-29 kjvdheideJAL-2844 added grouping to alignment panel based on...
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2017-11-29 kjvdheideJAL-2844 start on colouring back onto the alignment
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2017-11-29 kjvdheideJAL-2844 added colouring to partition selection
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2017-11-28 kjvdheideJAL-2844 added offset to x coord to make it equal 0...
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2017-11-28 kjvdheideMerge remote-tracking branch 'origin/develop' into...
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2017-11-28 kjvdheideJAL-2844 first go at partitioning, based on actual...
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2017-11-27 kjvdheideJAL-2852 JAL-2853 forester update
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2017-11-27 kjvdheideJAL-2844 added selection threshold (non-adjusted calculation...
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2017-11-27 kjvdheideJAL-2799 re-enabled change listener for Aptx's tabs...
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2017-11-27 kjvdheideJAL-2844 line drawing at mouse click added on top of...
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2017-11-27 kjvdheideJAL-2853 colours now enabled by default in Aptx
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2017-11-26 kjvdheideJAL-2847 first rough attempt at loading in via database ID
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2017-11-24 kjvdheideJAL-2799 rearranged AptxInit code
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2017-11-24 kjvdheideJAL-2799 ALL trees are now loaded in as separate Aptx...
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2017-11-24 kjvdheideJAL-2794 binding now exclusively supports single tab...
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2017-11-24 kjvdheideMerge branch 'kjvdh/features/PhylogenyViewer' of https...
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2017-11-24 kjvdheideJAL-2838 start on sorting
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2017-11-24 kjvdheideJAL-2838 made getAssociatedPanels public
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2017-11-22 kjvdheideJAL-2794 reworked, everything routes via avport.sendselectio...
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2017-11-22 kjvdheideJAL-2794 removed several redundancies in the binding...
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2017-11-22 kjvdheideJAL-281 fixed misplaced quote in example text
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2017-11-22 kjvdheideJAL-2844 mouse press code rearranged to prepare for...
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2017-11-22 kjvdheideJAL-2847 small things, filled in actionperformeds
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2017-11-22 kjvdheideJAL-2799 fixed selections not carrying over to tabs...
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2017-11-21 kjvdheideJAL-2847 added database menu items and listeners
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2017-11-21 kjvdheideMerge remote-tracking branch 'origin/releases/Release_2_10_3...
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2017-11-21 kjvdheideJAL-281 added string label for loading from database
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2017-11-20 kjvdheideMerge remote-tracking branch 'origin/releases/Release_2_10_3...
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2017-11-20 kjvdheideJAL-2799 JAL-2805 JAL-281 multiple trees can now be...
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2017-11-20 kjvdheideJAL-281 added history box to tree url input window
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2017-11-20 kjvdheideJAL-281 option pane with error handling for selecting...
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2017-11-17 kjvdheideJAL-2805 code refactor (actionPerformed cleaned up...
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2017-11-17 kjvdheideJAL-2805 reorganized code, tree building goes through...
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2017-11-17 kjvdheideJAL-2795 removed unneeded distancematrix length/width...
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2017-11-17 kjvdheideJAL-2844 changed Aptx config to make all cladogram...
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2017-11-17 kjvdheideMerge branch 'kjvdh/features/PhylogenyViewer' of
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2017-11-17 kjvdheideJAL-2805 couple of method name changes
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2017-11-17 kjvdheideJAL-281 added menu items and listeners to load from...
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2017-11-17 kjvdheideJAL-281 changed load associated tree GUI item to menu...
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2017-11-16 kjvdheideJAL-2805 expanded tree and treenode interfaces
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2017-11-16 kjvdheideJAL-2805 loads of file reorganizing, interfaces expanded
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2017-11-15 kjvdheideJAL-2805 functional binding on loading associated trees
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2017-11-14 kjvdheideJAL-2805 viewport is passed along to the tree parser
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2017-11-14 kjvdheideJAL-2795 added duplication check when calculated nodes...
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2017-11-14 kjvdheideJAL-2805 added getters for hashmaps filled with associated...
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2017-11-14 kjvdheideJAL-2805 added static method for logging duplications...
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2017-11-14 kjvdheideJAL-2805 more sensible interface method params
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2017-11-14 kjvdheideJAL-2805 finished up interface comments
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2017-11-14 kjvdheideJAL-2805 re-enabled one2many checks
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