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2017-12-14	gmungoc	JAL-2843 save/restore colour feature by attribute,...	commit \| commitdiff \| tree
2017-12-14	gmungoc	JAL-2879 save/restore feature sub-attributes in Jalview...	commit \| commitdiff \| tree
2017-12-14	gmungoc	JAL-2843 missed Castor class	commit \| commitdiff \| tree
2017-12-14	gmungoc	JAL-2843 and Castor metadata file for latest changes	commit \| commitdiff \| tree
2017-12-14	gmungoc	JAL-2843 schema and code changes to save colour by...	commit \| commitdiff \| tree
2017-12-13	gmungoc	JAL-2843 add isByAttribute to interface for convenience	commit \| commitdiff \| tree
2017-12-11	gmungoc	JAL-2843 add colour by attribute, and no value colour...	commit \| commitdiff \| tree
2017-12-08	gmungoc	JAL-2843 example filters added	commit \| commitdiff \| tree
2017-12-08	gmungoc	JAL-2843 read/write feature filters from/to Jalview...	commit \| commitdiff \| tree
2017-12-08	gmungoc	JAL-2843 refactor / tidy for feature filter input/output	commit \| commitdiff \| tree
2017-12-08	gmungoc	JAL-2843 methods relocated	commit \| commitdiff \| tree
2017-12-08	gmungoc	JAL-2843 toStableString, fromString for Jalview features...	commit \| commitdiff \| tree
2017-12-08	gmungoc	JAL-2843 FeatureRenderer.getFeatureFilters returns...	commit \| commitdiff \| tree
2017-12-05	gmungoc	Merge branch 'develop' into features/JAL-1793VCF	commit \| commitdiff \| tree
2017-12-04	gmungoc	Merge branch 'spikes/mungo' into features/JAL-1793VCF	commit \| commitdiff \| tree
2017-12-04	gmungoc	JAL-2850 JAL-1766 option to load contig sequence referenced...	commit \| commitdiff \| tree
2017-12-04	gmungoc	JAL-2845 locate reverse strand insertion as complement...	commit \| commitdiff \| tree
2017-12-04	gmungoc	JAL-2835 small refactor to only extract transcript...	commit \| commitdiff \| tree
2017-12-01	gmungoc	JAL-2835 spike updated to latest (use specific SO term...	commit \| commitdiff \| tree
2017-12-01	gmungoc	JAL-2835 refactored to extract specific consequence...	commit \| commitdiff \| tree
2017-12-01	gmungoc	JAL-2792 sort feature attributes for output, not for...	commit \| commitdiff \| tree
2017-12-01	gmungoc	JAL-2835 additional sub-terms of sequence_variant added	commit \| commitdiff \| tree
2017-11-30	gmungoc	JAL-2850 improved use of htsjdk api to read contig...	commit \| commitdiff \| tree
2017-11-30	gmungoc	JAL-1766 additional tests for stub htsjdk wrapper	commit \| commitdiff \| tree
2017-11-28	gmungoc	Merge branch 'develop' into features/JAL-1793VCF	commit \| commitdiff \| tree
2017-11-28	gmungoc	JAL-2850 MapList.isToForwardStrand added	commit \| commitdiff \| tree
2017-11-27	gmungoc	JAL-2850 VCFLoader refactored to load VCF to contig...	commit \| commitdiff \| tree
2017-11-24	gmungoc	JAL-2808 update spike to latest	commit \| commitdiff \| tree
2017-11-24	gmungoc	JAL-2808 refactoring to better handler filter by Score...	commit \| commitdiff \| tree
2017-11-24	gmungoc	JAL-2808 relocate constants for compiler, add COLUMN_COUNT...	commit \| commitdiff \| tree
2017-11-24	gmungoc	JAL-2808 refine FeatureMatcher interface and matcher...	commit \| commitdiff \| tree
2017-11-24	gmungoc	JAL-2808 don't cache i18n - MessageManager already...	commit \| commitdiff \| tree
2017-11-23	gmungoc	JAL-2808 update spike to latest (filter range tooltip...	commit \| commitdiff \| tree
2017-11-23	gmungoc	JAL-2808 refactor KeyedMatcher as FeatureMatcher with...	commit \| commitdiff \| tree
2017-11-23	gmungoc	JAL-2808 update spike to latest (filter range, Present...	commit \| commitdiff \| tree
2017-11-23	gmungoc	JAL-2808 removed field filters; sort CSQ data by key	commit \| commitdiff \| tree
2017-11-23	gmungoc	JAL-2808 added conditions Present, NotPresent as options	commit \| commitdiff \| tree
2017-11-23	gmungoc	JAL-2808 refactor conversion of table data to beans...	commit \| commitdiff \| tree
2017-11-23	gmungoc	JAL-2808 pass FeatureSettings to controller as array...	commit \| commitdiff \| tree
2017-11-22	gmungoc	JAL-2808 update conditions list on change of attribute...	commit \| commitdiff \| tree
2017-11-22	gmungoc	JAL-2069 spike updated with latest (FeatureTypeSettings)	commit \| commitdiff \| tree
2017-11-22	gmungoc	Merge branch 'develop' into features/JAL-1793VCF	commit \| commitdiff \| tree
2017-11-22	gmungoc	JAL-2808 JAL-2069 FeatureTypeSettings (with new Filters...	commit \| commitdiff \| tree
2017-11-22	gmungoc	JAL-2069 renamed helper method better	commit \| commitdiff \| tree
2017-11-22	gmungoc	JAL-2808 defer dispose to allow screen location to...	commit \| commitdiff \| tree
2017-11-22	gmungoc	JAL-2069 Javadoc added only	commit \| commitdiff \| tree
2017-11-22	gmungoc	JAL-1424 enhanced to report dynamic keys separately	commit \| commitdiff \| tree
2017-11-22	gmungoc	JAL-2808 capture feature attributes datatype (Character...	commit \| commitdiff \| tree
2017-11-17	gmungoc	JAL-2808 set (read-only) condition text field as disabled	commit \| commitdiff \| tree
2017-11-16	gmungoc	JAL-2069 fix minor bugs in variable setting	commit \| commitdiff \| tree
2017-11-16	gmungoc	Merge branch 'develop' into features/JAL-1793VCF	commit \| commitdiff \| tree
2017-11-16	gmungoc	JAL-2069 removed unused and redundant thresholdIsMinMax	commit \| commitdiff \| tree
2017-11-16	gmungoc	JAL-2816 JAL-2835 additional tests to include colour...	commit \| commitdiff \| tree
2017-11-16	gmungoc	JAL-2835 update test for array-valued attribute name	commit \| commitdiff \| tree
2017-11-16	gmungoc	JAL-2835 update test for CSQ data held as a Map	commit \| commitdiff \| tree
2017-11-16	gmungoc	JAL-2835 test updated for colour by 'nested attribute'	commit \| commitdiff \| tree
2017-11-16	gmungoc	JAL-2816 tests for findFeaturesAtColumn	commit \| commitdiff \| tree
2017-11-15	gmungoc	JAL-2816 exclude filtered / thresholded out features...	commit \| commitdiff \| tree
2017-11-15	gmungoc	JAL-2835 spike updated with latest	commit \| commitdiff \| tree
2017-11-15	gmungoc	JAL-2835 take all CSQ fields; catch invalid field match...	commit \| commitdiff \| tree
2017-11-15	gmungoc	JAL-2835 support filter/colour by nested attribute...	commit \| commitdiff \| tree
2017-11-15	gmungoc	JAL-2835 code tidy (generic type constructors)	commit \| commitdiff \| tree
2017-11-15	gmungoc	JAL-2069 dialog title now 'Variable colour'	commit \| commitdiff \| tree
2017-11-15	gmungoc	JAL- 2835 support filter on nested attribute keys	commit \| commitdiff \| tree
2017-11-15	gmungoc	JAL-2835 add filters for VCF/VEP 'fields of interest'	commit \| commitdiff \| tree
2017-11-15	gmungoc	JAL-1270 add missing "Functional" to tests	commit \| commitdiff \| tree
2017-11-14	gmungoc	JAL-2754 corrected merge conflict	commit \| commitdiff \| tree
2017-11-13	gmungoc	JAL-2738 stubs for filtering VEP and VCF fields of...	commit \| commitdiff \| tree
2017-11-13	gmungoc	Merge branch 'develop' into features/JAL-1793VCF	commit \| commitdiff \| tree
2017-11-13	gmungoc	JAL-2662 tweak README, format code	commit \| commitdiff \| tree
2017-11-13	gmungoc	JAL-2176 removed unused Sequence.index	commit \| commitdiff \| tree
2017-11-13	gmungoc	JAL-2679 example accession changed to CAD01290	commit \| commitdiff \| tree
2017-11-10	gmungoc	JAL-2829 fixes and unit tests	commit \| commitdiff \| tree
2017-11-10	gmungoc	JAL-2562 updated findPosition javadoc to match behaviour	commit \| commitdiff \| tree
2017-11-10	gmungoc	JAL-2829 unit tests for failing cases	commit \| commitdiff \| tree
2017-11-10	gmungoc	Merge branch 'develop' into features/JAL-1793VCF	commit \| commitdiff \| tree
2017-11-08	gmungoc	JAL-2808 i18n, widget state settings	commit \| commitdiff \| tree
2017-11-08	gmungoc	JAL-2069 updated spike to latest	commit \| commitdiff \| tree
2017-11-08	gmungoc	JAL-2069 ensure threshline instantiated to avoid NPE	commit \| commitdiff \| tree
2017-11-08	gmungoc	JAL-2069 (helper method for) italic titled borders	commit \| commitdiff \| tree
2017-11-07	gmungoc	JAL-2069 update spike to latest (no value colour options)	commit \| commitdiff \| tree
2017-11-07	gmungoc	JAL-2069 choice of no / min / max colour if 'no attribute...	commit \| commitdiff \| tree
2017-11-07	gmungoc	JAL-2069 update spike with latest	commit \| commitdiff \| tree
2017-11-07	gmungoc	JAL-2069 corrected overloaded constructor behaviour	commit \| commitdiff \| tree
2017-11-07	gmungoc	JAL-2069 update spike branch with latest	commit \| commitdiff \| tree
2017-11-07	gmungoc	Merge branch 'develop' into features/JAL-1793VCF	commit \| commitdiff \| tree
2017-11-07	gmungoc	JAL-2069 add 'by attribute' options to graduated feature...	commit \| commitdiff \| tree
2017-11-07	gmungoc	JAL-2069 add attributeName and noValueColour to FeatureColour	commit \| commitdiff \| tree
2017-11-07	gmungoc	JAL-2816 tweaks to feature visibility checks	commit \| commitdiff \| tree
2017-11-07	gmungoc	JAL-2808 tweak to use Iterable for set of matchers	commit \| commitdiff \| tree
2017-11-07	gmungoc	JAL-2069 JAL-2808 utility method to build combobox...	commit \| commitdiff \| tree
2017-11-07	gmungoc	JAL-2820 limit length of residue tooltip	commit \| commitdiff \| tree
2017-11-06	gmungoc	JAL-2069 cache colours generated from labels	commit \| commitdiff \| tree
2017-11-06	gmungoc	JAL-2820 include attribute value used for feature colour...	commit \| commitdiff \| tree
2017-11-06	gmungoc	JAL-2808 small tweak to getString to quote the pattern...	commit \| commitdiff \| tree
2017-11-03	gmungoc	JAL-2808 attribute description as tooltip in dropdown...	commit \| commitdiff \| tree
2017-11-03	gmungoc	JAL-2808 JAL-2069 record feature attributes descriptions...	commit \| commitdiff \| tree
2017-11-02	gmungoc	JAL-2808 spike updated with latest	commit \| commitdiff \| tree
2017-11-02	gmungoc	JAL-2808 only initialise AND and OR buttons once	commit \| commitdiff \| tree
2017-11-02	gmungoc	JAL-2808 new Filters tab in Feature Settings	commit \| commitdiff \| tree
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