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JAL-2157 JAL-1803 refactored Sequence.updatePDBIds, parse DBRefs with
2016-09-16 gmungocJAL-2157 JAL-1803 refactored Sequence.updatePDBIds...
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2016-09-16 gmungocJAL-2183 don't open two free text panels; give input...
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2016-09-16 gmungocJAL-2183 avoid duplicate closeDialog()
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2016-09-16 gmungocJAL-2164 removed unused parameters from JmolParser...
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2016-09-16 gmungocJAL-1270 JAL-1919 ensure Temp Factor is OFF for test...
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2016-09-13 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-09-13 gmungocJAL-1803 tests added for PDBEntry.Type
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2016-09-13 gmungocJAL-1803 extracted class ChainId to jalview.util.CaseInsensi...
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2016-09-13 gmungocJAL-2119 use File.separator not "/"
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2016-09-12 gmungocJAL-2119 case-sensitive href filename checking
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2016-09-12 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-09-07 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-09-07 gmungocJAL-2164 fix failing test
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2016-09-06 gmungocJAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandidate()
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2016-09-06 gmungocJAL-2147 additional test coverage for findMappingsForSequenc...
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2016-09-05 gmungocJAL-2154 made Java 7 compatible
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2016-09-05 gmungocJAL-2106 increased coverage for testGetPrimaryDbRefs
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2016-09-05 gmungocJAL-2106 corrections to DBRefEntry.isPrimary code and...
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2016-09-02 gmungocJAL-1854 distinct messages for TODO/FIXME and DOCUMENT ME
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2016-09-01 gmungocJAL-2077 don't mess with the look and feel
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2016-09-01 gmungocJAL-2077 less drastic exit on close
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2016-09-01 gmungocJAL-2077 test harness for inspecting mouse events
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2016-09-01 gmungocJAL-2077 check isPopupTrigger in mouseReleased not...
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2016-09-01 gmungocJAL-1421 add generics to NJTree, refactor recursive...
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2016-09-01 gmungocJAL-1854 rule to disallow import of swing in appletgui
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2016-09-01 gmungocJAL-2077 do nothing in mousePressed if right button...
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2016-09-01 gmungocJAL-2077 force defer right-click handling to mouseReleased...
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2016-08-31 gmungocJAL-2077 test isPopupTrigger in mouseReleased or mouseClicke...
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2016-08-31 gmungocJAL-2077 more javadoc
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2016-08-31 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-08-31 gmungocJAL-2077 check for isPopupTrigger() in mousePressed...
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2016-08-31 gmungocJAL-1670 repositioned feature for backwards compatibility...
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2016-08-30 gmungocJAL-2183 defensive check for openFrameCount < 0 (shouldn...
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2016-08-30 gmungocJAL-2183 simplified database tree actionPerformed,...
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2016-08-30 gmungocJAL-2183 revised change (= no change)
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2016-08-30 gmungocJAL-2183 formatter added @Override (only)
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2016-08-30 gmungocJAL-2183 removed redundant (overriden) add panel to...
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2016-08-29 gmungocJAL-1854 tweaks to rules and README
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2016-08-29 gmungocJAL-1854 checkstyle relocated to /utils, newlines to...
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2016-08-29 gmungocMerge branch 'bug/JAL-1841rnaSecStr' into develop
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2016-08-29 gmungocJAL-1448 updated unit test for last change
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2016-08-29 gmungocJAL-1841 robustness fix
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2016-08-29 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
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2016-08-26 gmungocJAL-1854 two more rules, readme notes
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2016-08-26 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
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2016-08-26 gmungocJAL-1854 commented FallThrough rule
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2016-08-26 gmungocJAL-1854 corrected nested package rule
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2016-08-26 gmungocJAL-2049 set Ensembl variant source to ENSEMBL if ...
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2016-08-26 gmungocJAL-1854 comment switch case fallthrough
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2016-08-25 gmungocJAL-1854 missing case break statements added
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2016-08-25 gmungocJAL-1854 initial checkstyle config
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2016-08-25 gmungocJAL-2178 remove duplicate Uniprot db source
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2016-08-25 gmungocJAL-1424 duplicate key removed
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2016-08-24 gmungocJAL-1355 correct 'thereshold' to 'threshold' in message...
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2016-08-24 gmungocJAL-1424 removed unused and duplicated message keys
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2016-08-24 gmungocJAL-1424 tidy / recode MessageManager calls to support...
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2016-08-24 gmungocJAL-1854 removed pointless method override
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2016-08-24 gmungocJAL-1424 removed two redundant (overwritten) setText...
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2016-08-24 gmungocJAL-1424 corrected Message bundle lookup key
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2016-08-24 gmungocJAL-1424 undo i18n of exception message
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2016-08-24 gmungocJAL-1854 declare immutable class as final
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2016-08-24 gmungocJAL-1424 recode calls to MessageManager to allow code...
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2016-08-24 gmungocJAL-2151 port fix to applet
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2016-08-24 gmungocJAL-1424 enhanced for cleaner reporting, checks calls...
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2016-08-24 gmungocJAL-1424 also report (obsolete) keys in translated...
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2016-08-23 gmungocJAL-2176 unused field / methods removed
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2016-08-23 gmungocJAL-2174 markColumns() refactored inside ColumnSelection
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2016-08-22 gmungocJAL-1448 corrected for backwards compatibility for...
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2016-08-22 gmungocJAL-2175 code tidying
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2016-08-22 gmungocJAL-2175 code/test fixes/tidy for PFAM/MSF/JSON roundtrip
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2016-08-22 gmungocJAL-2011 adjust method to fix failing unit test
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2016-08-19 gmungocJAL-2174 bug fixes + refactoring to allow + unit tests
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2016-08-18 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
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2016-08-18 gmungocJAL-2077 using Platform method to check for Ctrl-down
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2016-08-18 gmungocJAL-1445 status message '...not containing...' for...
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2016-08-18 gmungocJAL-1693 show warning dialog if unable to make CDS...
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2016-08-18 gmungocJAL-1855 fail gracefully if XML has no <sequence> element
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2016-08-18 gmungocJAL-2077 handling Cmd-click in scale panel for Mac...
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2016-08-18 gmungocJAL-2001 return copy of selection in getSelected()
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2016-08-17 gmungocJAL-2146 status message now with formatted residue...
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2016-08-17 gmungocJAL-2173 don't remove annotation from hidden columns
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2016-08-17 gmungocJAL-2172 reverted to not sorting column selection
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2016-08-17 gmungocJAL-2105 rest versions updated to 4.6, change log link...
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2016-08-17 gmungocJAL-2172 handle case where column selection is not...
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2016-08-16 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
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2016-08-16 gmungocJAL-2172 unit test added
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2016-08-16 gmungocJAL-2171 matching bracket default character for rna...
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2016-08-16 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
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2016-08-15 gmungocJAL-1841 better i18n text
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2016-08-12 gmungocJAL-1841 count (logo height) is valid pairs only; detect...
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2016-08-12 gmungocJAL-1841 bug fixes / code tidy for rna SS rendering...
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2016-08-12 gmungocJAL-1841, bug fix in rna SS consensus, additions to...
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2016-08-12 gmungocJAL-2171 default SS symbol to existing (if present)
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2016-08-10 gmungocJAL-2124 i18n of 'All' menu item
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2016-08-10 gmungocJAL-2124 i18n of "All" menu item
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2016-08-10 gmungocJAL-2146 small optimisation (avoid String creation)
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2016-08-10 gmungocJAL-2146 show Column no [Sequence no [Residue / pos...
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2016-08-08 gmungocJAL-1577 rebuild menus when secondary structure manually...
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2016-08-08 gmungocJAL-2119 replaced link with a non-404 alternative
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2016-08-08 gmungocJAL-2168 -nonews option also mentioned here
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