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JAL-2360 C is Pink with consensus > 85% (not 100%)
2017-01-26 gmungocJAL-2360 C is Pink with consensus > 85% (not 100%)
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2017-01-26 gmungocMerge branch 'features/JAL-2360colourSchemeApplicability...
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2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSchemeApp...
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2017-01-26 gmungocJAL-2344 test fix and code tidy for review comments
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2017-01-26 gmungocJAL-2380 code tidy after review
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2017-01-25 gmungocJAL-2344 push Cache.getProperty("LAST_DIRECTORY") inside...
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2017-01-23 gmungocJAL-2386 unit tests for change colour (and minor refactoring for
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2017-01-23 gmungocJAL-2386 simplify changeColour (doesn't change colour...
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2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicability...
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2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSchemeApp...
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2017-01-20 gmungocJAL-2385 tweak to applet 'switch colour slider context'
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2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicability...
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2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSchemeApp...
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2017-01-20 gmungocJAL-2385 update slider settings when switching slider...
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2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicability...
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2017-01-20 gmungocJAL-2383 fixup from last merge
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2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSchemeApp...
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2017-01-20 gmungocJAL-2383 check for null, spelling
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2017-01-20 gmungocJAL-2383 make popup colour menu order and wording consistent
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2017-01-20 gmungocJAL-2383 restore group conservation slider setting...
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2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSchemeApp...
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2017-01-19 gmungocJAL-2383 restore PID colour threshold from project...
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2017-01-19 gmungocJAL-2370 unit tests for extracted ColumnSelection.stretchGroup()
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2017-01-19 gmungocJAL-2370 corrected applet mouse drag, refactored into...
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2017-01-17 gmungocJAL-2370 fix bug when hiding a range including two...
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2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicability...
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2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSchemeApp...
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2017-01-16 gmungocJAL-1270 class renamed
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2017-01-16 gmungocJAL-2380 fix Matrix.postMultiply()
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2017-01-16 gmungocJAL-1270 tweaks to AlignmentGenerator / client class
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2017-01-12 gmungocJAL-1270 renamed AlignmentGenerator, and added peptide...
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2017-01-12 gmungocJAL-2379 null references to PCA model when panel is...
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2017-01-12 gmungocJAL-2344 now flagging formats as 'identifiable' instead...
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2017-01-11 gmungocJAL-2344 separated AlignmentFileI into AlignmentFileReaderI,
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2017-01-11 gmungocJAL-2344 groovy script that registers a new file format
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2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
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2017-01-11 gmungocJAL-2344 addSequence() method added to support Groovy...
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2017-01-10 gmungocJAL-2377 avoid infinite loop formatting 1.0E-310
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2017-01-09 gmungocJAL-2371 pull up isNucleotide to SequenceCollectionI
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2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure interface...
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2017-01-06 gmungocJAL-2371 slight simplification of findColour overrides
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2017-01-06 gmungocJAL-2371 correct Clustal, Blosum, PID colouring of...
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2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicability...
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2017-01-06 gmungocJAL-2360 findColour() with no args removed from ColourSchemeI
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2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicability...
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2017-01-06 gmungocMerge branch 'develop' into features/JAL-2360colourSchemeApp...
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2017-01-05 gmungocJAL-2374 unit test for (modified) Alignment.findGroup()
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2017-01-05 gmungocJAL-2374 fix popup out by one and multiple groups bugs
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2017-01-05 gmungocJAL-2371 add test for toggling ignore gaps with PID...
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2017-01-05 gmungocMerge branch 'features/JAL-2360colourSchemeApplicability...
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2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSchemeApp...
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2017-01-05 gmungocJAL-2373 set state of Above PID, By Conservation in...
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2017-01-05 gmungocJAL-2371 tests added
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2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
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2016-12-29 gmungocJAL-2630 first pass groovy colour scheme (with slight...
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2016-12-23 gmungocJAL-2360 removed UserDefinedColours.userColourSchemes
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2016-12-23 gmungocJAL-2120 JAL-2360 remove obsolete PDBViewer
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2016-12-22 gmungocJAL-2360 fix bug that prematurely created a SequenceGroup
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2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper...
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2016-12-21 gmungocJAL-2360 set new/loaded colour scheme name correctly
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2016-12-21 gmungocJAL-2360 simplified code to create a new colour scheme
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2016-12-21 gmungocJAL-2360 added a table to show score colours
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2016-12-21 gmungocJAL-2360 ColourMenuHelper now builds and selects items...
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2016-12-21 gmungocJAL-2360 comment only
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2016-12-21 gmungocJAL-2360 tidy up, simplify isApplicableTo test
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2016-12-21 gmungocJAL-2360 no RNAHelices colouring for groups
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2016-12-21 gmungocJAL-2361 Blosum is enabled for peptide
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2016-12-21 gmungocJAL-1421 add types to Map
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2016-12-21 gmungocJAL-2360 fix incorrect action on Cancel user defined...
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2016-12-21 gmungocJAL-2360 tidy spelling and file contents order only
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2016-12-21 gmungocJAL-2360 Javadoc and test cases for findAnnotation
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2016-12-20 gmungocJAL-2360 testRegisterColourScheme to demonstrate a...
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2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignFrame...
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2016-12-19 gmungocJAL-2360 amended toAppletParameter() for reproducible...
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2016-12-19 gmungocJAL-2361 select colour menu item by matching its name...
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2016-12-16 gmungocJAL-2356 enhanced unit test to verify reuse (or not...
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2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test...
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2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),...
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2016-12-16 gmungocJAL-1705 JAL-98 use SortedMap as more accurate type...
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2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
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2016-12-16 gmungocJAL-1354 use i18n text for expected value
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2016-12-14 gmungocJAL-2360 test added
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2016-12-14 gmungocJAL-2360 added check for null annotations array
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2016-12-14 gmungocJAL-1544 JAL-2360 reformatted help page a bit nicer...
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2016-12-13 gmungocJAL-2365 test for lightgray, darkgray not lightGray...
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2016-12-13 gmungocJAL-2360 code formatting only and if-else changed to...
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2016-12-13 gmungocJAL-2361 adding items to applet colour menus, TCoffee...
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2016-12-12 gmungocJAL-2361 extract methods to (re-)build colour menu
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2016-12-12 gmungocJAL-2360 simplify nucleotide flag, remove setter
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2016-12-12 gmungocJAL-2361 use consistent colour names on menus
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2016-12-12 gmungocJAL-1544 backgroud -> background
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2016-12-12 gmungocJAL-2362 return correct lower-case colour; Javadoc...
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2016-12-12 gmungocJAL-2632 corrected lookup of residue colour
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2016-12-09 gmungocJAL-2105 updated for reviewed REST version 4.8
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2016-12-09 gmungocJAL-1895 suppress RNA interaction colour option
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2016-12-08 gmungocJAL-2359 add Window menu entry only after all danger...
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2016-12-07 gmungocJAL-2356 use cached Sifts file if not expired
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2016-12-07 gmungocJAL-2354 handle error response when fetching features
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2016-12-07 gmungocJAL-2344 handle null format, simplify JalviewFileChooser...
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2016-11-30 gmungocJAL-2344 use ".cif" for saved mmCIF file (and refactor...
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