| 2015-02-03 |
gmungoc | JAL-845 redundant 'map to self' removed from buildSearchResults
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commit | commitdiff | tree |
| 2015-02-03 |
gmungoc | Comments added
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commit | commitdiff | tree |
| 2015-02-03 |
gmungoc | JAL-845 code/refactoring/tests related to linking DNA...
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commit | commitdiff | tree |
| 2015-01-30 |
gmungoc | JAL-845 linked protein/dna 'slave' further PoC functionality
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commit | commitdiff | tree |
| 2015-01-23 |
gmungoc | JAL-1619 javadoc/tidy
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commit | commitdiff | tree |
| 2015-01-23 |
gmungoc | JAL-1635 show warning if less than 3 columns selected...
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commit | commitdiff | tree |
| 2015-01-23 |
gmungoc | Random DNA generator tarted up
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commit | commitdiff | tree |
| 2015-01-22 |
gmungoc | JAL-1619 refactoring / tests to support 'align linked...
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commit | commitdiff | tree |
| 2015-01-20 |
gmungoc | JAL-1619 test that reordering cDNA does not change...
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commit | commitdiff | tree |
| 2015-01-20 |
gmungoc | JAL-1619 tweaked for better reusability
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commit | commitdiff | tree |
| 2015-01-19 |
gmungoc | JAL-1619 refactored cDNA translation; modified codon...
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commit | commitdiff | tree |
| 2015-01-19 |
gmungoc | JAL-1636 typed collections now in ResidueProperties
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commit | commitdiff | tree |
| 2015-01-19 |
gmungoc | JAL-1636 fix for mouseover of 'X' in translated protein
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commit | commitdiff | tree |
| 2015-01-18 |
gmungoc | JAL-1619 refactoring wip
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commit | commitdiff | tree |
| 2015-01-17 |
gmungoc | JAL-1619 further refactoring
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commit | commitdiff | tree |
| 2015-01-16 |
gmungoc | JAL-1619 refactoring in progress for Dna translation
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commit | commitdiff | tree |
| 2015-01-14 |
gmungoc | JAL-1619 AlignedCodonFrame in new alignment should...
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commit | commitdiff | tree |
| 2015-01-14 |
gmungoc | JAL-1619 modified repaint after 'Align As' action
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commit | commitdiff | tree |
| 2015-01-14 |
gmungoc | JAL-1619 Javadoc
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commit | commitdiff | tree |
| 2015-01-12 |
gmungoc | JAL-1619 load/align cDNA for protein (wip)
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commit | commitdiff | tree |
| 2015-01-07 |
gmungoc | JAL-845 TODO comment added
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commit | commitdiff | tree |
| 2015-01-04 |
gmungoc | JAL-1619 first draft of 'linked protein and cDNA'
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commit | commitdiff | tree |
| 2014-12-28 |
gmungoc | JAL-845 first working linked edit protein -> cDNA
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commit | commitdiff | tree |
| 2014-12-16 |
gmungoc | JAL-1328 System.exit() removed as it aborts an entire...
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commit | commitdiff | tree |
| 2014-12-16 |
gmungoc | JAL-845 first simple unit tests added
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commit | commitdiff | tree |
| 2014-12-16 |
gmungoc | JAL-845 move main method to 'test' class (needs further...
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commit | commitdiff | tree |
| 2014-12-16 |
gmungoc | JAL-1618 feature parsing bug (and formatting)
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commit | commitdiff | tree |
| 2014-12-16 |
gmungoc | JAL-1619 refactorings: Map, StringBuilder, Override
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commit | commitdiff | tree |
| 2014-12-16 |
gmungoc | JAL-845 formatting only (block parentheses)
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commit | commitdiff | tree |
| 2014-12-16 |
gmungoc | JAL-1619 don't copy hidden or RNA SS annotations to...
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commit | commitdiff | tree |
| 2014-12-12 |
gmungoc | JAL-845 don't translate hidden annotation (plus formatting)
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commit | commitdiff | tree |
| 2014-12-09 |
gmungoc | JAL-1616 loading of datasets from XML patched
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commit | commitdiff | tree |
| 2014-12-05 |
gmungoc | JAL-1614 flag 'protein' removed
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commit | commitdiff | tree |
| 2014-12-03 |
gmungoc | Merge branch 'Release_2_8_2_Branch' of https://source...
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commit | commitdiff | tree |
| 2014-12-01 |
gmungoc | JAL-429 Phylip added to help page
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commit | commitdiff | tree |
| 2014-12-01 |
gmungoc | JAL-1544 typos/formatting in help (and Phylip added)
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commit | commitdiff | tree |
| 2014-11-28 |
gmungoc | JAL-1610 check reference annotations against alignment...
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commit | commitdiff | tree |
| 2014-11-27 |
gmungoc | JAL-1603 if Chimera selected in Preferences, warn if...
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commit | commitdiff | tree |
| 2014-11-27 |
gmungoc | Merge branch 'Release_2_8_2_Branch' of https://source...
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commit | commitdiff | tree |
| 2014-11-27 |
gmungoc | Merge branch 'Release_2_8_2_Branch' of https://source...
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commit | commitdiff | tree |
| 2014-11-26 |
gmungoc | JAL-1528 NullPointer check / more informative PDB fetch...
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commit | commitdiff | tree |
| 2014-11-25 |
gmungoc | JFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
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commit | commitdiff | tree |
| 2014-11-21 |
gmungoc | JAL-1528 found and readded Colour by Chain ('rainbow...
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commit | commitdiff | tree |
| 2014-11-21 |
gmungoc | Merge branch 'Release_2_8_2_Branch' of https://source...
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commit | commitdiff | tree |
| 2014-11-19 |
gmungoc | JAL-1342 new command-line parameter -jabaws <URL>
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commit | commitdiff | tree |
| 2014-11-18 |
gmungoc | JAL-1349 rebuild Web Service menu after add/delete...
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commit | commitdiff | tree |
| 2014-11-18 |
gmungoc | JAL-1582 removing finalize() as may have unexpected...
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commit | commitdiff | tree |
| 2014-11-18 |
gmungoc | JAL-1582 quicker tooltip on service presets (and code...
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commit | commitdiff | tree |
| 2014-11-18 |
gmungoc | JAL-1349 refresh menu presets after 'create' new
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commit | commitdiff | tree |
| 2014-11-18 |
gmungoc | JAL-1580 Chimera path tooltip, removed focusListener
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commit | commitdiff | tree |
| 2014-11-18 |
gmungoc | Merge branch 'Release_2_8_2_Branch' of https://source...
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1573 unit test added to verify Help target enum...
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1581 Tooltip slimmed down, Help button added on...
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1293 hide/show sequence annotations with hide/reveal...
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1586 chimera file chooser added, validate on OK...
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1580 size parameters dialog to height of Desktop
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1528 Chimera Help doc + fixes to setting colours
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1528 new Preference CHIMERA_PATH (Preferences ...
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1528 Chimera tidy errors, focus after align, close...
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commit | commitdiff | tree |
| 2014-11-17 |
gmungoc | JAL-1528 bug fixes and adjustments to Chimera interface
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commit | commitdiff | tree |
| 2014-11-11 |
gmungoc | JAL-1527 opening a project saved with JMol should use...
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commit | commitdiff | tree |
| 2014-11-06 |
gmungoc | JAL-1152 use a proper RadioButton not a faked one
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commit | commitdiff | tree |
| 2014-11-05 |
gmungoc | JAL-674 Prefences tweaks incl help documentation for...
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commit | commitdiff | tree |
| 2014-11-05 |
gmungoc | JAL-1152 new Structure tab on Preferences for SS derivation...
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commit | commitdiff | tree |
| 2014-11-04 |
gmungoc | JAL-1152 help updates for Preferences
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commit | commitdiff | tree |
| 2014-11-04 |
gmungoc | JAL-1152 annotation sort algorithm optimisation
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commit | commitdiff | tree |
| 2014-11-03 |
gmungoc | Merge branch 'features/JAL-1152annotationSorting' of...
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commit | commitdiff | tree |
| 2014-11-03 |
gmungoc | JAL-1152 annotation sorting preferences and help documentation
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commit | commitdiff | tree |
| 2014-10-31 |
gmungoc | JAL-1152 bug fix for 'no sort' case + tests for autocalc...
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commit | commitdiff | tree |
| 2014-10-31 |
gmungoc | JAL-1152 menu tweaks plus new option to put Autocalc...
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commit | commitdiff | tree |
| 2014-10-30 |
gmungoc | JAL-1152 with sticky annotation sort order that updates...
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commit | commitdiff | tree |
| 2014-10-30 |
gmungoc | JAL-1152 prototype of new Annotations menu with sort...
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commit | commitdiff | tree |
| 2014-10-28 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2014-10-28 |
gmungoc | JAL-1264 refactor to add menu options to _both_ sequence...
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commit | commitdiff | tree |
| 2014-10-23 |
gmungoc | JAL-1264 new unit tests
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commit | commitdiff | tree |
| 2014-10-23 |
gmungoc | JAL-1264 further refactoring and tests
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commit | commitdiff | tree |
| 2014-10-22 |
gmungoc | JAL-1304 repositioned tab to correct example
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commit | commitdiff | tree |
| 2014-10-14 |
gmungoc | JAL-1551 CRLF handling
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commit | commitdiff | tree |
| 2014-10-13 |
gmungoc | JAL-1264 unneeded setup removed
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commit | commitdiff | tree |
| 2014-10-13 |
gmungoc | JAL-1264 unit test corrected
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commit | commitdiff | tree |
| 2014-10-12 |
gmungoc | JAL-1544 SEQENCE -> SEQUENCE
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commit | commitdiff | tree |
| 2014-10-12 |
gmungoc | JAL-1264 help updates for show/hide annotations on
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commit | commitdiff | tree |
| 2014-10-10 |
gmungoc | JAL-1551 project-specific settings
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commit | commitdiff | tree |
| 2014-10-10 |
gmungoc | JAL-1551 proposed project settings for code cleanup...
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commit | commitdiff | tree |
| 2014-10-10 |
gmungoc | JAL-1264 unit tests
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commit | commitdiff | tree |
| 2014-10-10 |
gmungoc | Suppressed test that needs user interaction to allow...
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commit | commitdiff | tree |
| 2014-10-10 |
gmungoc | JAL-1551 CRLF handling
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commit | commitdiff | tree |
| 2014-10-10 |
gmungoc | JAL-1264 show/hide annotations, plus merged changes
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commit | commitdiff | tree |
| 2014-10-10 |
gmungoc | JAL-1481 wrap tooltip in html
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commit | commitdiff | tree |
| 2014-10-10 |
gmungoc | JAL-1264 added getAlignmentAnnotations(calcId, label)
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commit | commitdiff | tree |
| 2014-10-10 |
gmungoc | JAL-1264 reverted (removed added method)
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commit | commitdiff | tree |
| 2014-10-08 |
gmungoc | Merge branch 'Release_2_8_2_Branch' into
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commit | commitdiff | tree |
| 2014-10-07 |
gmungoc | JAL-1264 wip
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commit | commitdiff | tree |
| 2014-10-07 |
gmungoc | JAL-1554 handle left-then-right click on sequence id
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commit | commitdiff | tree |
| 2014-10-03 |
gmungoc | JAL-1264 javadoc update
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commit | commitdiff | tree |
| 2014-10-03 |
gmungoc | JAL-1264 show/hide annotations; JAL-1481 Find tooltip
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commit | commitdiff | tree |
| 2014-10-03 |
gmungoc | JAL-1506 delete all warning; JAL-1264 show/hide annotations
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commit | commitdiff | tree |
| 2014-10-03 |
gmungoc | JAL-1264 refactored show/hide annotation types including...
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commit | commitdiff | tree |
| 2014-10-03 |
gmungoc | JAL-1481 search expression validation
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commit | commitdiff | tree |
| 2014-10-03 |
gmungoc | JAL-1506 correct exit on close align frame
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commit | commitdiff | tree |
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