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JAL-3130 some clover fixes for helplinks. Use 'gradle test -Pclover=true'
2019-04-15 Ben SoaresJAL-3130 some clover fixes for helplinks. Use 'gradle...
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2019-04-15 Ben SoaresJAL-3130 adapted getdown src. attempt 2. first attempt...
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2019-04-05 Ben SoaresJAL-3130 adapted getdown src
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2019-04-05 Ben SoaresJAL-3130 This commit concentrates on the Mac OS X DMG...
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2019-04-04 Ben SoaresJAL-3130 trying to be Java 1.8 source compatible -...
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2019-04-04 Ben SoaresJAL-3130 JAL-3007 more files needed for getdown launcher
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2019-04-04 Ben SoaresJAL-3130 JAL-3007 improvements to gradle build
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2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11. Now...
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2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11 and...
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2019-03-22 Ben SoaresJAL-3130 adding two more modules picked up by gradle...
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2019-03-22 Ben SoaresJAL-3130 mark some deprecated methods in Regex as ...
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2019-03-21 Ben SoaresJAL-3130 Replaced deprecated Class.newInstance() with...
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2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecation_a...
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2019-03-19 Ben SoaresJAL-3130 remove some comments on quit. fix modules...
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2019-03-19 Ben SoaresJAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...
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2019-03-18 Ben SoaresJAL-3130 removing no longer needed JRE (going to use...
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2019-03-18 Ben SoaresJAL-3130 Removing accidentally committed tmp dir
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2019-03-07 Ben SoaresJAL-3130 deprecation change preparation
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2019-03-05 Ben SoaresJAL-3141 Fixed inconsistent (changed) message labels...
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2019-02-22 Ben SoaresJAL-3141 improved message for asking whether to delete...
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2019-02-21 Ben SoaresJAL-3141 Sensible refactoring for confirming deleting...
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2019-02-17 Ben SoaresJAL-3141 User warning when deleting old backup files...
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2019-02-15 Ben SoaresJAL-3141 re-order deletion of old files and check lastModifi...
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2019-02-14 Ben SoaresJAL-3141 Added warning/confirmation when suffixReverse...
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2019-02-14 Ben SoaresJAL-3141 Moved 'Previously saved scheme' combo box...
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2019-02-01 Ben SoaresJAL-3141 Slight efficiency gain in detecting backupfiles...
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2019-01-30 Ben SoaresJAL-3141 Enabled the 'Include backpup files' checkbox...
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2019-01-29 Ben SoaresJAL-3141 Found a good fix for updating the FileChooser...
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2019-01-29 Ben SoaresJAL-3141 Found a (not ideal) fix for updating the FileChoose...
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2019-01-28 Ben SoaresJAL-3141 improvement on BackupFilenameParts filename...
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2019-01-28 Ben SoaresJAL-3141 fixed test
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2019-01-25 Ben SoaresJAL-3141. This adds quite a lot of code to allow an...
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2019-01-24 Ben SoaresJAL-3141 Added a '.fa' to filename examples
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2019-01-24 Ben SoaresJAL-3141 Change of label (change of '_' character to...
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2019-01-24 Ben SoaresJAL-3141 Change of label
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2019-01-24 Ben SoaresJAL-3141 Removed border around example filenames in...
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2019-01-24 Ben SoaresJAL-3141 New layout and wording of Backups Preferences...
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2019-01-24 Ben SoaresJAL-3141 Eclipse re-formatting of file
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2019-01-24 Ben SoaresJAL-3141 Reformatted code in eclipse
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2019-01-23 Ben SoaresJAL-3141 Added Presets options in the Backups Preferences...
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2019-01-22 Ben SoaresJAL-3141 Fixed what happens when suffix template has...
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2019-01-22 Ben SoaresJAL-3141 New message translations
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2019-01-21 Ben SoaresJAL-3141 Rejigged the Preferences tab and changed some...
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2019-01-21 Ben SoaresJAL-3141 Fixed tests for new placement of suffix after...
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2019-01-20 Ben SoaresJAL-3141 removing diagnostic output
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2019-01-20 Ben SoaresJAL-3141 Fixed example filenames in Preferences pane...
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2019-01-20 Ben SoaresJAL-3141 Changed suffix position to after the extension...
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2019-01-20 Ben SoaresJAL-3141 Re-added some changes in Jalview2XML missed...
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2019-01-16 Ben SoaresJAL-3141 Remove no longer used exampleLabel
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2019-01-14 Ben SoaresJAL-3141 Forgot this file, sorry!
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2019-01-14 Ben SoaresJAL-3141 Added a 'Save Project as...' File menu item...
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2019-01-14 Ben SoaresJAL-3141 Made more constants
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2019-01-09 Ben SoaresJAL-3141 removed redundant method to tests
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2019-01-09 Ben SoaresJAL-3141 language word ending corrections
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2019-01-09 Ben SoaresJAL-3141 Added i18n for the example filenames in Preferences
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2019-01-09 Ben SoaresJAL-3141 forgot to add this file after extracting the...
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2019-01-09 Ben SoaresJAL-3141 Made one more suggested change from code review
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2019-01-08 Ben SoaresJAL-3141 Made some more suggested changes from code...
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2019-01-08 Ben SoaresJAL-3141 Made some suggested changes from code review
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2018-12-18 Ben SoaresJAL-3130 added a javac helper script too (like the...
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2018-12-17 Ben SoaresJAL-3174 Merging in some test filename-case fixes
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2018-12-17 Ben SoaresJAL-3130 java bash wrapper to choose which java to...
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2018-12-17 Ben SoaresJAL-3130 Some fixes to ant build xml, and the modules...
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2018-12-14 Ben SoaresJAL-3130 single class testing on CLI with ant [ -Dclass...
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2018-12-13 Ben SoaresJAL-3130 Fixing a few more tests that pass on a Mac...
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2018-12-13 Ben SoaresJAL-3130 Use non-deprecated check for Mac CMD key press
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2018-12-13 Ben SoaresJAL-3130 Attempting to fix 8 tests that pass on a Mac...
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2018-12-11 Ben SoaresJAL-3130 Turns out Quit/About/Preferences handlers...
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2018-12-10 Ben SoaresJAL-3130 another tweak for bamboo to add the JDK jmods...
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2018-12-10 Ben SoaresJAL-3130 build.xml tweaks for clover-3.4.1
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2018-12-10 Ben SoaresJAL-3130 tweaked build.xml to do java 11 bytecode compiling...
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2018-12-07 Ben SoaresJAL-3130 Some re-reorganisation for build process
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2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
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2018-12-03 Ben SoaresJAL-3130 de-multi-release-jar.sh Script to make multi...
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2018-12-03 Ben SoaresJAL-3130 Added flagged runtime 'Reflection' check on...
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2018-11-30 Ben SoaresJAL-3130 refactored a lot of this. See the JAVA-11...
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2018-11-20 Ben Soares.gitignore changes
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2018-11-19 Ben SoaresJAL-1988 JAL-3130 New jlinked JRE in jalview_java2...
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2018-11-09 Ben SoaresJAL-1988 This fixes the Quit response when user cancels...
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2018-11-08 Ben SoaresJAL-1988 JAL-3130 Now we're in Java 11 land, using...
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2018-11-08 Ben SoaresJAL-1988 tidying, plus don't add Preferences to Tools...
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2018-11-08 Ben SoaresJAL-1988 JAVA 11 enabled version with Quit, Preferences...
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2018-11-05 Ben SoaresJAL-1988 Investigating...
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2018-11-05 Ben SoaresJAL-3141 Slightly improved message and more thorough...
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2018-11-05 Ben SoaresJAL-3141 couple of minor fixes for example files being...
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2018-11-02 Ben SoaresJAL-3141 Tests now available and working, bringing...
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2018-11-01 Ben SoaresJAL-3141 Preferences 'Backups' tab now fits. Moved...
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2018-10-31 Ben SoaresJAL-3141 Preferences 'Backups' tab now working. Doesn...
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2018-10-25 Ben SoaresJAL-3141 Ostensibly all backups working for alignment...
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2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling.
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2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling.
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2018-10-23 Ben SoaresBackupFilter and other unfinished business
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2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser...
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2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser...
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2018-10-22 Ben SoaresJAL-3141 Tidying
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2018-10-19 Ben SoaresJAL-3141 Backup files being created with default suffix...
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2018-08-27 Ben SoaresJAL-3061 / JAL-3053
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2018-08-03 Ben SoaresJAL-3061
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2018-08-03 Ben SoaresMerge branch 'bug/JAL-3061_RNA_secondary_structure_annotatio...
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2018-08-02 Ben SoaresJAL-3053
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