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JAL-3863 promote non-canonical version of dbref to a canonical one
2021-09-03 Jim ProcterJAL-3863 promote non-canonical version of dbref to...
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2021-09-03 Jim ProcterJAL-3829 comments on the 3D structure chooser’s initialisati...
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2021-09-03 Jim ProcterJAL-3865 isolate PDB and TDB clients and last query...
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2021-09-03 Jim ProcterJAL-3863 passing test to verify a uniprot accession...
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2021-09-03 Jim ProcterJAL-3829 JAL-3865 StructureChooserQuerySource implementation...
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2021-09-03 Jim ProcterJAL-3855 don’t need to query Alphafold2 repository...
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2021-09-03 Jim ProcterJAL-3829 refactored FilterOption provider to the StructureCh...
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2021-09-02 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
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2021-09-02 Jim ProcterMerge branch 'cherry-pick/r2_11_2_JAL-3509' into develop
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2021-09-02 gmungocJAL-1842 unit test updated for EnsemblGene feature...
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2021-09-02 gmungocJAL-1842 adjust code to match changed semantics of...
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2021-09-02 gmungocJAL-3509 JAL-1842 minor tidying of code
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2021-09-02 gmungocJAL-1842 remove redundant call to FeatureRenderer.featuresAd...
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2021-09-02 gmungocJAL-3509 better placement of call to notifyFeaturesChanged()
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2021-09-02 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetching...
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2021-08-30 Jim ProcterJAL-3863 fix test and note about fragility
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2021-08-30 Jim ProcterJAL-3863 add canonical DBRefEntry flag to Jalview project
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2021-08-30 Jim ProcterJAL-3829 generalised Alphafold retrieval mechanism...
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2021-08-30 Jim ProcterJAL-3863 mark first accession retrieved from Uniprot...
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2021-08-30 Jim ProcterJAL-3829 Structure chooser specific FTS interface and...
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2021-08-30 Jim ProcterMerge branch 'feature/JAL-3855_ebi_alphafold_import...
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2021-08-30 Jim ProcterJAL-3829 3d-beacons structure chooser logic (not yet...
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2021-08-30 Jim ProcterJAL-3829 pulled out more of the FTS dependent parts...
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2021-08-30 Jim ProcterJAL-3829 updated tests for 3db fetcher’s working FTS...
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2021-08-30 Jim ProcterJAL-3829 proof in principle 3d-beacons sequence fetcher...
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2021-08-30 Jim ProcterJAL-3829 3d-beacons has a custom alignment retrieval...
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2021-08-30 Jim ProcterJAL-3674 Jmol seems to sometimes return a null for...
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2021-08-30 Jim ProcterJAL-3829 fixed up the 3d-beacons data columns definitions...
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2021-08-30 Jim ProcterJAL-3829 JAL-2176 - TODO re unused argument in FTSRestClientI
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2021-08-30 Jim ProcterJAL-3829 tidying up PDBFTSRestClient test responses...
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2021-08-30 Jim ProcterJAL-3829 Javadoc for FTSColumnPreferences
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2021-08-30 Jim ProcterJAL-3829 pushed the PDBFTSClient specific code to new...
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2021-08-30 Jim ProcterJAL-3829 removed unneeded attribute in FTS core
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2021-08-30 arngucciJAL-3829_spike minor changes
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2021-08-30 arngucciJAL-3832 Gui working, with 3DBeacons parameters
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2021-08-30 arngucciMerge branch 'arnaud/develop' into arnaud/JAL-3929_spike...
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2021-08-30 Jim ProcterJAL-3829 forgot to add in the dummy 3d-beacons db proxy
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2021-07-27 Jim ProcterJAL-3674 Jmol seems to sometimes return a null for...
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2021-07-27 Jim ProcterJAL-3855 suppress NPE when trying to retrieve SIFTS...
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2021-07-27 Jim ProcterJAL-3855 ALPHAFOLD database source based on the PDB...
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2021-07-27 Jim ProcterJAL-3855 check if an alpha fold ID and retrieve using...
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2021-07-27 Jim ProcterJAL-3855 check for existence of an alpha fold model...
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2021-07-27 Jim ProcterJAL-3855 convenience method to check a URL will return...
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2021-06-09 Jim ProcterJAL-3840 don’t update the modal residue count for gaps
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2021-06-09 Jim Procterfixes JAL-3840
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2021-06-09 Jim ProcterJAL-3840 failing test - show that addGaps overflows
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2021-04-06 Jim ProcterJAL-3832 dummy 3d-beacons database client and code...
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2020-10-28 Jim ProcterJAL-3760 fix tests for changed behaviour
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2020-10-28 Jim ProcterJAL-3760 refactor nucleotide proportion test to per...
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2020-10-28 Jim ProcterMerge branch 'portforward/JAL-3765_patch_to_2112' into...
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2020-10-28 Jim ProcterJAL-3765 fix test
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2020-10-28 Jim Procterfix for JAL-3765
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2020-09-21 Jim ProcterMerge branch 'merge_review/JAL-3490_2_11_2_develop...
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2020-09-10 Jim ProcterJAL-3746 bump release version for 2.11.2 series (currently...
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2020-08-31 Jim ProcterJAL-3680 merged description of individual cursor key...
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2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor...
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2020-08-21 Jim ProcterJAL-3615 code tidy, improve unit test
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2020-08-17 Jim ProcterJAL-3490 don't init the combo box's history cache for...
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2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop
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2020-08-17 Jim ProcterMerge branch 'task/JAL-3597memoryLeakTest' into develop
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2020-08-12 Jim ProcterMerge branch 'task/JAL-3608_property_set_laf_and_tests...
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2020-08-03 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into develop
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2020-07-29 Jim ProcterJAL-3371 JAL-2983 don't modify 'extent' of slider ...
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2020-07-28 Jim ProcterMerge branch 'feature/JAL-3615gzipXfam' into develop
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2020-07-28 Jim ProcterJAL-3615 JAL-2656 missing import after cherrypick
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2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzipped...
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2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their...
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2020-07-28 Jim ProcterJAL-3615 update tests for Rfam/Pfam specific gzip endpoints
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2020-07-27 Jim ProcterJAL-3697 show total number of features not shown
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2020-07-27 Jim ProcterJAL-3696 log the error message from the exception to...
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2020-07-27 Jim ProcterJAL-3695 htsjdk 2.12 -> 2.23 (library change only,...
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2020-06-29 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2020-06-29 Jim ProcterJAL-3675 2.11.1.1 release notes
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2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all
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2020-06-29 Jim ProcterJAL-3493 failing test - creates a highlight and column...
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2020-06-26 Jim ProcterJAL-3673 make sure font metrics are updated if dealing...
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2020-06-26 Jim ProcterJAL-3518 fix highlighting in Jalview for selections...
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2020-06-26 Jim ProcterJAL-3672 debug=false means no debug output
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2020-06-26 Jim ProcterJAL-3672 more efficient when debug not enabled
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2020-06-26 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress...
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2020-05-25 Jim ProcterJAL-3626 rescue automatic configuration of JALVIEW_VERSION...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files
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2020-04-21 Jim ProcterJAL-3407 release notes - JAL-247 - for auto-set-ID...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterJAL-3407 fix JAL-3574 - remove from known issues for...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterJAL-3574 JAL-3407 release notes
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2020-04-21 Jim ProcterMerge branch 'bug/JAL-3574filterByPOS' into documentation...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterJAL-3407 add and document ComputePeptideVariants.groovy
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2020-04-21 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2020-04-21 Jim ProcterJAL-3567 JAL-3407 document sequence features report...
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2020-04-21 Jim ProcterMerge branch 'bug/JAL-3567virtualFeatureCoordinates...
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2020-04-21 Jim ProcterJAL-367 code tidy
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2020-04-21 Jim ProcterJAL-3567 translated rather than imputed peptide
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2020-04-14 Jim ProcterJAL-3407 JAL-3529 release notes
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2020-04-14 Jim ProcterMerge branch 'bug/JAL-3529_uniprotidsinstockholm' into...
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2020-04-14 Jim ProcterJAL-3529 revert ordering of DBRef addition so it reflects...
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2020-04-14 Jim ProcterJAL-3597 improved Memory test suite by detecting base...
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