| 2017-01-20 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | JAL-2383 fixup from last merge
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | JAL-2383 check for null, spelling
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | JAL-2383 make popup colour menu order and wording consistent
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | JAL-2383 restore group conservation slider setting...
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
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commit | commitdiff | tree |
| 2017-01-19 |
gmungoc | JAL-2383 restore PID colour threshold from project...
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commit | commitdiff | tree |
| 2017-01-19 |
gmungoc | JAL-2370 unit tests for extracted ColumnSelection.stretchGroup()
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commit | commitdiff | tree |
| 2017-01-19 |
gmungoc | JAL-2370 corrected applet mouse drag, refactored into...
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commit | commitdiff | tree |
| 2017-01-17 |
gmungoc | JAL-2370 fix bug when hiding a range including two...
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commit | commitdiff | tree |
| 2017-01-17 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
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commit | commitdiff | tree |
| 2017-01-17 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
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commit | commitdiff | tree |
| 2017-01-16 |
gmungoc | JAL-1270 class renamed
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commit | commitdiff | tree |
| 2017-01-16 |
gmungoc | JAL-2380 fix Matrix.postMultiply()
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commit | commitdiff | tree |
| 2017-01-16 |
gmungoc | JAL-1270 tweaks to AlignmentGenerator / client class
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commit | commitdiff | tree |
| 2017-01-12 |
gmungoc | JAL-1270 renamed AlignmentGenerator, and added peptide...
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commit | commitdiff | tree |
| 2017-01-12 |
gmungoc | JAL-2379 null references to PCA model when panel is...
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commit | commitdiff | tree |
| 2017-01-12 |
gmungoc | JAL-2344 now flagging formats as 'identifiable' instead...
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commit | commitdiff | tree |
| 2017-01-11 |
gmungoc | JAL-2344 separated AlignmentFileI into AlignmentFileReaderI,
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commit | commitdiff | tree |
| 2017-01-11 |
gmungoc | JAL-2344 groovy script that registers a new file format
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commit | commitdiff | tree |
| 2017-01-11 |
gmungoc | JAL-2344 FileFormats singleton for formats, FileFormatI...
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commit | commitdiff | tree |
| 2017-01-11 |
gmungoc | JAL-2344 addSequence() method added to support Groovy...
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commit | commitdiff | tree |
| 2017-01-10 |
gmungoc | JAL-2377 avoid infinite loop formatting 1.0E-310
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commit | commitdiff | tree |
| 2017-01-09 |
gmungoc | JAL-2371 pull up isNucleotide to SequenceCollectionI
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commit | commitdiff | tree |
| 2017-01-09 |
gmungoc | JAL-2371 remove ColourSchemeI.findColour(c), pure interface...
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commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | JAL-2371 slight simplification of findColour overrides
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commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | JAL-2371 correct Clustal, Blosum, PID colouring of...
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commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
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commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | JAL-2360 findColour() with no args removed from ColourSchemeI
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commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
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commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
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commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | JAL-2374 unit test for (modified) Alignment.findGroup()
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commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | JAL-2374 fix popup out by one and multiple groups bugs
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commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | JAL-2371 add test for toggling ignore gaps with PID...
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commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
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commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
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commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | JAL-2373 set state of Above PID, By Conservation in...
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commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | JAL-2371 tests added
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commit | commitdiff | tree |
| 2017-01-04 |
gmungoc | JAL-2371 CollectionColourScheme wraps ColourSchemeI
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commit | commitdiff | tree |
| 2016-12-29 |
gmungoc | JAL-2630 first pass groovy colour scheme (with slight...
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commit | commitdiff | tree |
| 2016-12-23 |
gmungoc | JAL-2360 removed UserDefinedColours.userColourSchemes
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commit | commitdiff | tree |
| 2016-12-23 |
gmungoc | JAL-2120 JAL-2360 remove obsolete PDBViewer
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commit | commitdiff | tree |
| 2016-12-22 |
gmungoc | JAL-2360 fix bug that prematurely created a SequenceGroup
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commit | commitdiff | tree |
| 2016-12-22 |
gmungoc | JAL-2360 structure viewers now using ColourMenuHelper...
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 set new/loaded colour scheme name correctly
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 simplified code to create a new colour scheme
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 added a table to show score colours
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 ColourMenuHelper now builds and selects items...
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 comment only
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 tidy up, simplify isApplicableTo test
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 no RNAHelices colouring for groups
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2361 Blosum is enabled for peptide
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-1421 add types to Map
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 fix incorrect action on Cancel user defined...
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 tidy spelling and file contents order only
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 Javadoc and test cases for findAnnotation
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commit | commitdiff | tree |
| 2016-12-20 |
gmungoc | JAL-2360 testRegisterColourScheme to demonstrate a...
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commit | commitdiff | tree |
| 2016-12-20 |
gmungoc | JAL-2360 ColourSchemes holds configured schemes, AlignFrame...
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commit | commitdiff | tree |
| 2016-12-19 |
gmungoc | JAL-2360 amended toAppletParameter() for reproducible...
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commit | commitdiff | tree |
| 2016-12-19 |
gmungoc | JAL-2361 select colour menu item by matching its name...
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commit | commitdiff | tree |
| 2016-12-16 |
gmungoc | JAL-2356 enhanced unit test to verify reuse (or not...
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commit | commitdiff | tree |
| 2016-12-16 |
gmungoc | JAL-2360 added UserColourScheme.toAppletParameter+test...
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commit | commitdiff | tree |
| 2016-12-16 |
gmungoc | JAL-2360 getColour() renamed to getColourScheme(),...
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commit | commitdiff | tree |
| 2016-12-16 |
gmungoc | JAL-1705 JAL-98 use SortedMap as more accurate type...
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commit | commitdiff | tree |
| 2016-12-16 |
gmungoc | JAL-2360 refactoring for JalviewColourScheme enum,
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commit | commitdiff | tree |
| 2016-12-16 |
gmungoc | JAL-1354 use i18n text for expected value
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commit | commitdiff | tree |
| 2016-12-14 |
gmungoc | JAL-2360 test added
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commit | commitdiff | tree |
| 2016-12-14 |
gmungoc | JAL-2360 added check for null annotations array
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commit | commitdiff | tree |
| 2016-12-14 |
gmungoc | JAL-1544 JAL-2360 reformatted help page a bit nicer...
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commit | commitdiff | tree |
| 2016-12-13 |
gmungoc | JAL-2365 test for lightgray, darkgray not lightGray...
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commit | commitdiff | tree |
| 2016-12-13 |
gmungoc | JAL-2360 code formatting only and if-else changed to...
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commit | commitdiff | tree |
| 2016-12-13 |
gmungoc | JAL-2361 adding items to applet colour menus, TCoffee...
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commit | commitdiff | tree |
| 2016-12-12 |
gmungoc | JAL-2361 extract methods to (re-)build colour menu
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commit | commitdiff | tree |
| 2016-12-12 |
gmungoc | JAL-2360 simplify nucleotide flag, remove setter
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commit | commitdiff | tree |
| 2016-12-12 |
gmungoc | JAL-2361 use consistent colour names on menus
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commit | commitdiff | tree |
| 2016-12-12 |
gmungoc | JAL-1544 backgroud -> background
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commit | commitdiff | tree |
| 2016-12-12 |
gmungoc | JAL-2362 return correct lower-case colour; Javadoc...
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commit | commitdiff | tree |
| 2016-12-12 |
gmungoc | JAL-2632 corrected lookup of residue colour
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commit | commitdiff | tree |
| 2016-12-09 |
gmungoc | JAL-2105 updated for reviewed REST version 4.8
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commit | commitdiff | tree |
| 2016-12-09 |
gmungoc | JAL-1895 suppress RNA interaction colour option
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commit | commitdiff | tree |
| 2016-12-08 |
gmungoc | JAL-2359 add Window menu entry only after all danger...
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commit | commitdiff | tree |
| 2016-12-07 |
gmungoc | JAL-2356 use cached Sifts file if not expired
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commit | commitdiff | tree |
| 2016-12-07 |
gmungoc | JAL-2354 handle error response when fetching features
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commit | commitdiff | tree |
| 2016-12-07 |
gmungoc | JAL-2344 handle null format, simplify JalviewFileChooser...
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commit | commitdiff | tree |
| 2016-11-30 |
gmungoc | JAL-2344 use ".cif" for saved mmCIF file (and refactor...
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commit | commitdiff | tree |
| 2016-11-29 |
gmungoc | JAL-2329 tests to confirm behaviour of Java extended...
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commit | commitdiff | tree |
| 2016-11-29 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2016-11-29 |
gmungoc | JAL-2344 corrected conversion of Type enum to FileFormat
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commit | commitdiff | tree |
| 2016-11-29 |
gmungoc | JAL-2344 FileFormat.isStructureFile replaces
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commit | commitdiff | tree |
| 2016-11-28 |
gmungoc | Merge branch 'develop' into trialMerge
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commit | commitdiff | tree |
| 2016-11-28 |
gmungoc | JAL-2344 added FileFormatI.isStructureFile()
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commit | commitdiff | tree |
| 2016-11-28 |
gmungoc | JAL-2345 cache generated ImageIcon per file path
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commit | commitdiff | tree |
| 2016-11-25 |
gmungoc | JAL-2344 dynamically determine recognised extensions...
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commit | commitdiff | tree |
| 2016-11-25 |
gmungoc | Merge branch 'develop' into trialMerge
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commit | commitdiff | tree |
| 2016-11-25 |
gmungoc | JAL-2344 override to ignore (obsolete?) JalviewFileView
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commit | commitdiff | tree |
| 2016-11-25 |
gmungoc | JAL-2344 use .equals() to compare FileFormatI objects
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commit | commitdiff | tree |
| 2016-11-25 |
gmungoc | JAL-2344 correct roundtrip test to exclude Jalview...
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commit | commitdiff | tree |
| 2016-11-24 |
gmungoc | Distinguish text-only output formats and others (.jar...
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commit | commitdiff | tree |
| 2016-11-24 |
gmungoc | Further tweaks to get tests passing
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commit | commitdiff | tree |
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