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2016-09-19	tcofoegbu	merge	commit \| commitdiff \| tree
2016-09-13	tcofoegbu	JAL-2164 JAL-1919 disabled PDB file parser configuration...	commit \| commitdiff \| tree
2016-09-13	tcofoegbu	Revert "JAL-2164 JAL-1919 disabled and removed PDB...	commit \| commitdiff \| tree
2016-09-13	tcofoegbu	JAL-2164 JAL-1919 disabled and removed PDB file parser...	commit \| commitdiff \| tree
2016-09-13	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-09-13	tcofoegbu	JAL-2195 bug fix to enable restoring jmol session save...	commit \| commitdiff \| tree
2016-09-09	tcofoegbu	merge	commit \| commitdiff \| tree
2016-09-08	tcofoegbu	JAL-2164 renamed 'DEFAULT_STRUCTURE_FORMAT' property...	commit \| commitdiff \| tree
2016-08-31	tcofoegbu	JAL-2148 further enhancment to CA HETATM processing	commit \| commitdiff \| tree
2016-08-19	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-08-19	tcofoegbu	JAL-1803 unit test for PDB chainCode save/restore from...	commit \| commitdiff \| tree
2016-08-15	tcofoegbu	JAL-1128 fix for truncated bottom boarder pixels in...	commit \| commitdiff \| tree
2016-08-15	tcofoegbu	JAL-1128 fix for truncated bottom boarder pixels in...	commit \| commitdiff \| tree
2016-08-15	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-08-15	tcofoegbu	JAL-1919 Added improvement to ensure consistence of...	commit \| commitdiff \| tree
2016-08-08	tcofoegbu	replaced broken biojsmsa home link in jalveiw help	commit \| commitdiff \| tree
2016-08-01	tcofoegbu	JAL-2164 bugfix to convert insCodes of '\000' to '...	commit \| commitdiff \| tree
2016-07-29	tcofoegbu	JAL-1957 JAL-1479 updated SIFTS user docs	commit \| commitdiff \| tree
2016-07-29	tcofoegbu	JAL-2157 fixed Jalview2xmlTest	commit \| commitdiff \| tree
2016-07-27	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-07-27	tcofoegbu	JAL-1919 added codes for End-2-End scan for sequence...	commit \| commitdiff \| tree
2016-07-26	tcofoegbu	JAL-2157 bugfix for issues from enum refactoring	commit \| commitdiff \| tree
2016-07-25	tcofoegbu	JAL-2157 bugfix for regression from commit 82a6c8e2e25b75341...	commit \| commitdiff \| tree
2016-07-22	tcofoegbu	JAL-2148 Bugfix in structureImportSettings string-to...	commit \| commitdiff \| tree
2016-07-21	tcofoegbu	Resolve merge conflict for StructureImportSettings	commit \| commitdiff \| tree
2016-07-21	tcofoegbu	JAL-2148 fix to heuristically determine chain termination...	commit \| commitdiff \| tree
2016-07-19	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-07-19	tcofoegbu	JAL-1919 set default structure file format to mmCIF...	commit \| commitdiff \| tree
2016-07-14	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-07-14	tcofoegbu	JAL-1919 house-keeping	commit \| commitdiff \| tree
2016-07-13	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-07-13	tcofoegbu	JAL-2135 minor house-keeping	commit \| commitdiff \| tree
2016-07-12	tcofoegbu	JAL-2135 NPE bugfix when parsing a structure file with...	commit \| commitdiff \| tree
2016-07-08	tcofoegbu	JAL-1919 Fixed failing tests, enabled HETATM processing...	commit \| commitdiff \| tree
2016-07-01	tcofoegbu	JAL-2135 bugfix for error preventing processing of...	commit \| commitdiff \| tree
2016-06-30	tcofoegbu	JAL-2074 Improvement to StructureChooser and FTS interfaces...	commit \| commitdiff \| tree
2016-06-30	tcofoegbu	JAL-1919 updated PDBSequenceFetcherTest and JMol parser...	commit \| commitdiff \| tree
2016-06-29	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-06-29	tcofoegbu	JAL-1479 added test case to elaborate getEntityByMostOptimal...	commit \| commitdiff \| tree
2016-06-29	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-06-29	tcofoegbu	JAL-1479 improved Sifts PID calculation for determining...	commit \| commitdiff \| tree
2016-06-28	tcofoegbu	JAL-1479 minor refactor and housekeeping	commit \| commitdiff \| tree
2016-06-28	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-06-28	tcofoegbu	JAL-1479 improved SiftsClient test coverage and implemented...	commit \| commitdiff \| tree
2016-06-24	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-06-24	tcofoegbu	JAL-1960 updated unit test to include the test case...	commit \| commitdiff \| tree
2016-06-23	tcofoegbu	JAL-1996 added notes for an alternative way to view...	commit \| commitdiff \| tree
2016-06-22	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-06-22	tcofoegbu	JAL-1996 added link for viewing example source codes...	commit \| commitdiff \| tree
2016-06-22	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-06-22	tcofoegbu	JAL-1996 removed quick links in example pages, added...	commit \| commitdiff \| tree
2016-06-20	tcofoegbu	JAL-1996 added JalviewApplet to download list in applet...	commit \| commitdiff \| tree
2016-06-20	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-06-20	tcofoegbu	JAL-1823 Deleted two obsolete methods in PopupMenu...	commit \| commitdiff \| tree
2016-06-17	tcofoegbu	JAL-1823 Updated tooltip to reflect how a specific...	commit \| commitdiff \| tree
2016-06-17	tcofoegbu	JAL-1976 clear message if export is cancelled at 'Rendering...	commit \| commitdiff \| tree
2016-06-17	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-06-17	tcofoegbu	JAL-1996 update applet deployment note pages	commit \| commitdiff \| tree
2016-06-17	tcofoegbu	JAL-1976 improved exception handler.	commit \| commitdiff \| tree
2016-06-17	tcofoegbu	JAL-1976 added an intermediate message between a user...	commit \| commitdiff \| tree
2016-06-15	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-06-15	tcofoegbu	JAL-2002 disabled 'Best Uniport Coverage' filter. JAL...	commit \| commitdiff \| tree
2016-06-14	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-06-14	tcofoegbu	JAL-2102 right justify 'Mass' in uniprot FTS, and ...	commit \| commitdiff \| tree
2016-06-14	tcofoegbu	JAL-2047 trapped block that could likely cause ClassCastExce...	commit \| commitdiff \| tree
2016-06-14	tcofoegbu	JAL-2047 resolved structure chooser's displayed column...	commit \| commitdiff \| tree
2016-06-10	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-06-10	tcofoegbu	JAL-1479 updated SIFTS FTP download URL, added improvement...	commit \| commitdiff \| tree
2016-06-08	tcofoegbu	JAL-1479 JAL- Fix to eradicate duplicate mapping output...	commit \| commitdiff \| tree
2016-06-06	tcofoegbu	JAL-1919, JAL-1960 fix to disable refetching dbrefs...	commit \| commitdiff \| tree
2016-06-06	tcofoegbu	JAL-1944 bugfix for wrong alignment numbering when...	commit \| commitdiff \| tree
2016-06-02	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-06-02	tcofoegbu	JAL-2020 fix for Jmol choking jalview while loading...	commit \| commitdiff \| tree
2016-06-02	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-06-02	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-06-02	tcofoegbu	JAL-1944 java doc update and minor house keeping	commit \| commitdiff \| tree
2016-06-01	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-06-01	tcofoegbu	JAL-1944 updated bugfix implementation	commit \| commitdiff \| tree
2016-05-31	tcofoegbu	merge	commit \| commitdiff \| tree
2016-05-31	tcofoegbu	JAL-1563 minor user doc update	commit \| commitdiff \| tree
2016-05-31	tcofoegbu	JAL-1944 fix for visible seqs sometimes been replaced...	commit \| commitdiff \| tree
2016-05-30	tcofoegbu	JAL-2038 fix to enable case-insensitive file name ...	commit \| commitdiff \| tree
2016-05-27	tcofoegbu	merge	commit \| commitdiff \| tree
2016-05-27	tcofoegbu	JAL-1823 improvement to all chain code specification...	commit \| commitdiff \| tree
2016-05-27	tcofoegbu	JAL-1911 further improvement to bugfix - do not save...	commit \| commitdiff \| tree
2016-05-26	tcofoegbu	merge	commit \| commitdiff \| tree
2016-05-26	tcofoegbu	JAL-1911 improvement to bugfix - do not save i18n text...	commit \| commitdiff \| tree
2016-05-26	tcofoegbu	merge	commit \| commitdiff \| tree
2016-05-26	tcofoegbu	JAL-1911 bugfix - do not save i18n text in preference...	commit \| commitdiff \| tree
2016-05-26	tcofoegbu	merge	commit \| commitdiff \| tree
2016-05-26	tcofoegbu	JAL-1919 JAL-1479 user help docs	commit \| commitdiff \| tree
2016-05-26	tcofoegbu	merge	commit \| commitdiff \| tree
2016-05-26	tcofoegbu	JAL-1911 bugfix - do not save i18n text in preference...	commit \| commitdiff \| tree
2016-05-18	tcofoegbu	merge	commit \| commitdiff \| tree
2016-05-18	tcofoegbu	JAL-1563 User documentation for Uniprot FTS	commit \| commitdiff \| tree
2016-05-18	tcofoegbu	JAL-1563 smarter support for advanced querying of Uniprot FTS	commit \| commitdiff \| tree
2016-05-17	tcofoegbu	JAL-2106 JAL-1926 updated source doc for set/getSourceDBRef	commit \| commitdiff \| tree
2016-05-17	tcofoegbu	merge	commit \| commitdiff \| tree
2016-05-17	tcofoegbu	JAL-1270 Fixed anntatedPDBFileInputTest and updated...	commit \| commitdiff \| tree
2016-05-11	tcofoegbu	JAL-1563 updated uniprot FTS config file	commit \| commitdiff \| tree
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